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___ 2011 .

______________________( ..)
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230100


MPI, OpenCL OpenMP
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__________________ ( . .)
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( ..)

2011 .

1.

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2.3 ..

2.4

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5. ...........

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6. ............

13

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,
A = b, ai,j = |x(i)-x(j)|,|y(i)-y(j)|,|t(i)-t(j)|, bi = x(i),y(i),t(i)
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1) gcc (SUSE Linux) 4.3.2 [gcc-4_3-branch revision 141291] OpenMP,
MPI
2) llvm version 2.6svn (Built Jan 18 2011(17:37:10)) OpenCL.
3) NVIDIA version 260.19.36
4) MPICH version: 1.2.7 (release date 2005/06/22 16:33:49)
:
1) gnuplot 4.2 patchlevel 6
2) NVIDIA Compute Visual Profiler Version 3.2.0

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.
:
1) NVIDIA 8800GT, 14 :

8 CUDA (1,5 )
2
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InfiniBand, 2 x Gigabit Ethernet
8 Gb FB-DIMM DDR2
x86_64-suse-linux ( 2.6.32.12-0.7-default)

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1. ., . . .: , 1974
2. .., ..
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3. . ., . ., . . . .:
, 1977
4. ., . . .: , 1999
5. . ., . ., . .
. .: , 1978
6. . ., . . . .:
, 1990
7. Makoto Matsumoto, Takuji Nishimura: Dynamic Creation of Pseudorandom Generators
8. OpenCL Programming Guide for the CUDA Architecture (2010)
9. Podlozhnyuk V. Parallel Mersenne Twister (2007)
10. Ruud van der Pas: OpenMP and performance. In: International Workshop on OpenMP, Dresden
(2009)
11. Intel 64 and IA-32 Architectures Optimization Reference Manual (2011)
12. Compute Visual Profiler User Guide (2010)

1.

,
: ,
, , , , .
. 7-8.

. 7. .

. 8. -.

2.
1.
1. OpenCL ( ).
kernel
void generate_wave_surface(
global float* f_src,
//
size3 fsize,
// .
global float* z,
//
size3 zsize,
//
int part_size,
//
int interval,
//
local float* f,
//
local float* sum,
//
size3 offset)
{
const int part = get_group_id(0);
const int p = get_local_size(0);

const int u = get_local_id(0);


const int ip = 2;
const int iu = u%ip;
const int t0 = part*part_size;
const int t1 = t0 + part_size - interval;
//
event_t evt = async_work_group_copy(f, f_src, fsize.x*fsize.y*fsize.z, 0);
wait_group_events(1, &evt);
int maxs[3] = {zsize.x-1, zsize.y-1, t1-t0-1};
int maxd = maxs[0]+maxs[1]+maxs[2]+1;
//
for (int d=0; d<=maxd; ++d) {
int mi=min(d, maxs[0]);
int ni=max(0, mi-maxs[1]-maxs[2]);
for (int i=mi-u/ip; i>=ni; i-=p/ip) {
int mj=min(d-i, maxs[1]);
int nj=max(0, d-i-maxs[2]);
for (int j=mj; j>=nj; --j) {
int k=d-i-j;
k += t0;
int m1 = min(i+1, fsize.x);
int m2 = min(j+1, fsize.y);
int m3 = min(k+1, fsize.z);
sum[u] = 0;
// ( )
for (int x=iu; x<m1; x+=ip)
for (int y=0; y<m2; y++)
for (int t=0; t<m3; t++)

sum[u] += f[index(x, y, t, fsize)]*z[index(i-x, j-y, k-t, zsize)];


barrier(CLK_LOCAL_MEM_FENCE);
if (iu == 0) {
float s = 0;
for (uint c=0; c<ip; ++c)
s += sum[u+c];
z[index(i, j, k, zsize)] += s;
}
}
}
barrier(CLK_GLOBAL_MEM_FENCE);
}
}
2. OpenCL ( ).
kernel
void connect_wave_surface_parts(
global float* f_src,
//
size3 fsize,
// .
global float* z,
//
size3 zsize,
//
int parSize,
//
int interval,
//
local float* f,
//
local float* sum,
//
size3 offset)
{
const int part = get_group_id(0), u = get_local_id(0), p = get_local_size(0);
const int ip = 2, iu = u%ip;
const int t0 = (part+1)*partSize - interval;

const int t1 = t0 + interval;


//
event_t evt = async_work_group_copy(f, f_src, fsize.x*fsize.y*fsize.z, 0);
wait_group_events(1, &evt);
int maxs[3] = {zsize.x-1, zsize.y-1, interval-1};
int maxd = maxs[0]+maxs[1]+maxs[2]+1;
for (int d=0; d<=maxd; ++d) {
int mi=min(d, maxs[0]);
int ni=max(0, mi-maxs[1]-maxs[2]);
for (int i=mi-u/ip; i>=ni; i-=p/ip) {
int mj=min(d-i, maxs[1]);
int nj=max(0, d-i-maxs[2]);
for (int j=mj; j>=nj; --j) {
int k=d-i-j;
k += t0;
int skip = t1-k+1;
int m1 = min(zsize.x-i, fsize.x);
int m2 = min(zsize.y-j, fsize.y);
int m3 = min(zsize.z-k, fsize.z)-skip;
sum[u] = 0;
for (int x=iu; x<m1; x+=ip)
for (int y=0; y<m2; y++)
for (int t=0; t<m3; t++)
sum[u] += f[index(x, y, t+skip, fsize)]*z[index(i+x, j+y, k+t+skip,
zsize)];
m1 = min(i+1, fsize.x);
m2 = min(j+1, fsize.y);
m3 = min(k+1, fsize.z);

for (int x=iu; x<m1; x+=ip)


for (int y=0; y<m2; y++)
for (int t=0; t<m3; t++)
sum[u] += f[index(x, y, t, fsize)]*z[index(i-x, j-y, k-t, zsize)];
barrier(CLK_LOCAL_MEM_FENCE);
if (iu == 0) {
float s = 0;
for (uint c=0; c<ip; ++c)
s += sum[u+c];
z[index(i, j, k, zsize)] += s;
}
}
}
barrier(CLK_GLOBAL_MEM_FENCE);
}
}
3. OpenMP ( ).
void generate_water_surface(
const Discrete<Real>& f,
// .
const size3& fsize,
// - .
uint part_size,
//
uint interval,
//
const size3& zsize,
//
Discrete<Real>& Z)
//
{
const Index<3> id(fsize);
//
const Index<3> idz(zsize);
#pragma omp parallel shared(part_size, interval) num_threads(zsize[2]/part_size)
{
uint part = omp_get_thread_num();

uint t0 = part*part_size;
uint t1 = min(t0 + part_size - interval, zsize[2]);
for (uint x=0; x<zsize[0]; x++) {
for (uint y=0; y<zsize[1]; y++) {
for (uint t=t0; t<t1; t++) {
int m1 = min(x+1u, fsize[0]);
int m2 = min(y+1u, fsize[1]);
int m3 = min(t+1u, fsize[2]);
Real sum = 0;
for (int i=m1-1; i>=0; --i)
for (int j=m2-1; j>=0; --j)
for (int k=m3-1; k>=0; --k)
sum += f[f.size()-1-id(i, j, k)]*Z[idz(x-i, y-j, t-k)];
Z[idz(x, y, t)] += sum;
}
}
}
}
}
4. OpenMP ( ).
void connect_water_surface_parts(
const Discrete<Real>& f,
// .
const size3& fsize,
// - .
Discrete<Real>& z,
//
const size3& zsize,
//
uint part_size,
//
uint interval)
//
{
const Index<3> id(fsize);

const Index<3> idz(zsize);


#pragma omp parallel shared(part_size, interval) num_threads(zsize[2]/part_size)
{
uint part = omp_get_thread_num();
uint t0 = (part+1u)*part_size - interval;
uint t1 = min(t0 + interval, zsize[2]);
for (uint x=0; x<zsize[0]; x++) {
for (uint y=0; y<zsize[1]; y++) {
for (uint t=t0; t<t1; t++) {
Real sum = 0;
// calc sum right
int skip = t1 - t + 1;
int m1 = min(fsize[0], zsize[0]-x);
int m2 = min(fsize[1], zsize[1]-y);
int m3 = min(fsize[2], zsize[2]-t);
if (m3 > skip) {
m3 -= skip;
for (int i=0; i<m1; i++)
for (int j=0; j<m2; j++)
for (int k=0; k<m3; k++)
sum += f[f.size()-1-id(i, j, k + skip)]*z[idz(x+i, y+j, t+k +

skip)];
}

// calc left sum


m1 = min(x+1u, fsize[0]);
m2 = min(y+1u, fsize[1]);
m3 = min(t+1u, fsize[2]);
for (int i=m1-1; i>=0; --i)

for (int j=m2-1; j>=0; --j)


for (int k=m3-1; k>=0; --k)
sum += f[f.size()-1-id(i, j, k)]*z[idz(x-i, y-j, t-k)];
z[idz(x, y, t)] += sum;
}
}
}
}
}
5. MPI ( ).
void generate_water_surface_mpi(
const Discrete<Real>& f,
// .
const size3& fsize,
// - .
uint partSize,
//
uint interval,
//
const size3& zsize,
//
Discrete<Real>& z)
//
{
const Index_r<3> id(zsize);
const Index<3> idf(fsize);
for (int x=0; x<zsize[0]; x++) {
for (int y=0; y<zsize[1]; y++) {
for (int t=0; t<partSize-interval; t++) {
Real sum = 0.0f;
int m1 = min(x+1u, fsize[0]);
int m2 = min(y+1u, fsize[1]);
int m3 = min(t+1u, fsize[2]);
for (int i=m1-1; i>=0; --i)
for (int j=m2-1; j>=0; --j)

for (int k=m3-1; k>=0; --k)


sum += f[idf(i, j, k)]*z[id(x-i, y-j, t-k)];
z[id(x, y, t)] += sum;
}
}
}
}
6. MPI ( ).
void connect_water_surface_parts_mpi(
const Discrete<Real>& f,
// .
const size3& fsize,
// - .
Discrete<Real>& z,
//
const size3& zsize,
//
uint part_size,
//
uint interval)
//
{
uint t0 = part_size - interval;
uint t1 = part_size;
const Index_r<3> id(zsize);
const Index<3> idf(fsize);
for (uint x=0; x<zsize[0]; x++) {
for (uint y=0; y<zsize[1]; y++) {
for (uint t=t0; t<t1; t++) {
Real sum = 0.0f;

int skip = t1-t;


int m1 = min(fsize[0], zsize[0]-x);
int m2 = min(fsize[1], zsize[1]-y);

int m3 = fsize[2]-skip;
for (int i=0; i<m1; i++)
for (int j=0; j<m2; j++)
for (int k=0; k<m3; k++)
sum += f[idf(i, j, k + skip)]*z[id(x+i, y+j, t+k + skip)];
m1 = min(x+1, fsize[0]);
m2 = min(y+1, fsize[1]);
m3 = min(t+1, fsize[2]);
for (int i=m1-1; i>=0; --i)
for (int j=m2-1; j>=0; --j)
for (int k=m3-1; k>=0; --k)
sum += f[idf(i, j, k)]*z[id(x-i, y-j, t-k)];
z[id(x, y, t)] += sum;
}
}
}
}

2. -
7. OpenCL ( -).
kernel
void generate_water_surface_lh(
global Real* coefs,
//
Size2 coefs_size,
// - .
Domain2 sdom,
//
size3 zsize,
//
Real3 zdelta,
//
global float* white_noise,
//
global float* surface,

//
local float* reduc_buf)
//
{
const uint l = get_group_id(0);
const uint m = get_group_id(1);
const uint n = get_group_id(2);
const uint u = get_local_id(0);
const uint p = get_local_size(0);
const Real x = l*zdelta.x;
const Real y = m*zdelta.y;
const Real t = n*zdelta.z;
const Real2 d = delta2(sdom);
reduc_buf[u] = 0.0;
for (uint c=u; c<COEFS_SIZE_X*COEFS_SIZE_Y; c+=p) {
Real w = mad(d.x, ((c/COEFS_SIZE_Y) % (COEFS_SIZE_X - 0)), sdom.min.x);
Real teta = mad(d.y, (c % (COEFS_SIZE_Y - 0)), sdom.min.y);
reduc_buf[u] += coefs[c]*cos(w*(w*native_divide(cos(teta)*x + sin(teta)*y,
9.8154) - t) + 2.0*PI*white_noise[c]);
}
barrier(CLK_LOCAL_MEM_FENCE);
if (u != 0) return;
Real sum = 0.0;
for (uint i=0; i<p; ++i)
sum += reduc_buf[i];
surface[index(l, m, n, zsize)] = sum;
}
8. OpenMP ( -).
void generate_water_surface(
const Discrete<Real>& coefs,
//

const size2& coefs_size,


// - .
const Discrete<Real>& spec,
//
const Domain<Real, 2>& sdom,
//
const Discrete<Real>& white_noise,
//
const size3& zsize,
//
const Real3& zdelta,
//
Discrete<Real>& surface,
//
uint part_count)
// ()
const Index<2> id(coefs_size);
const Index<3> idz(zsize);
const Real3 delta = zdelta;
const Real2 d = sdom.delta();
const Real2 min = sdom.min();
uint count = zsize;
#pragma omp parallel for collapse(3) shared(white_noise) num_threads(part_count)
for (uint n=0; n<zsize[2]; n++) {
for (uint l=0; l<zsize[0]; l++) {
for (uint m=0; m<zsize[1]; m++) {
Real x = l*delta[0];
Real y = m*delta[1];
Real t = n*delta[2];
Real sum = 0;
for (uint i=0; i<coefs_size[0]; i++) {
Real w = min[0] + i*d[0];
for (uint j=0; j<coefs_size[1]; j++) {
Real theta = min[1] + j*d[1];
Real si, co;

sincosf(theta, &si, &co);


Real kx = w*w*co/Real(9.8154);
Real ky = w*w*si/Real(9.8154);
uint idx = id(i, j);
sum += coefs[idx]*cosf(kx*x + ky*y - w*t +
Real(2)*PI*white_noise[idx]);
}
}
surface[idz(l, m, n)] = sum;
}
}
}
}
9. MPI ( -).
void generate_water_surface(
const Discrete<Real>& coefs,
//
const size2& coefs_size,
// - .
const Discrete<Real>& spec_fd,
//
const Domain<Real, 2>& sdom,
//
const Discrete<Real>& white_noise,
//
const size3& zsize,
//
const Real3& delta,
//
Discrete<Real>& surface,
//
uint part_count)
// ()
{
const Index<2> id(coefs_size);
const Index<3> idz(zsize);
const Real2 d = sdom.delta();
const Real2 min = sdom.min();

uint part_size_x = zsize[0]/proc::count;


for (uint l=0; l<part_size_x; l++) {
for (uint m=0; m<zsize[1]; m++) {
for (uint n=0; n<zsize[2]; n++) {
Real x = l*delta[0];
Real y = m*delta[1];
Real t = n*delta[2];
Real sum = 0.0;
for (uint i=0; i<coefs_size[0]; i++) {
for (uint j=0; j<coefs_size[1]; j++) {
Real w = min[0] + i*d[0];
Real theta = min[1] + j*d[1];
Real kx = w*w*cos(theta)/9.8154;
Real ky = w*w*sin(theta)/9.8154;
sum += coefs[id(i, j)]*cos(kx*x + ky*y - w*t + 2.0*PI*white_noise[id(i,
j)]);
}
}
surface[idz(l, m, n)] = sum;
}
}
}
}

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