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(R )
3HC
H
N
H2
C
(R )
C
C
O H 3C H
(Z )
H
C
N
H
CH3 O
Hari Purnomo
R1
HO
NH
CO2 C
CH R
C
N
H
Ar
C
H
H
R3
(R )
OH
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
Penggolongan :
A. Antibiotika laktam
1. Turunan Penisilin
2. Turunaan Sefalosporin
3. Turunan laktam Non Klasik
B. Turunan Amfenikol
C. Turunan Tetrasiklin
D. Turunan Aminoglikosida
E. Turunan Makrolida
F. Turunan Polipeptida
G. Turunan Linkosamida
a.
b.
c.
d.
e.
H. Turunan Polien
I. Turunan Ansamisin
J. Turunan Antrasiklin
K. Fosfomisin
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
TheActionofAntimicrobialDrugs
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5
Figure 20.2
CH3
S
NH
O
CH
CH
basitrasin
C
CH3
CH
COOH
Penicillin nucleus
B-lactam ring
O
S
R
NH
O
CH
C H2
C
C
O
CH2
C
CH3
Cephalosporin nucleus
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
Cellwallstructure
Gramnegative
Grampositive
Pennicilinbindingprotein(PBP)
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
Cellwallstructure
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Gramnegative
HariPurnomo,ANTIBIOTIKA,FARKIMII.
Cellwallstructure
Grampositive
Pennicilinbindingprotein(PBP)
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
Spectrumofantimicrobialactivity
NarrowspectrumdrugsaffectonlyGram
positivecellsoronlyGramnegativecells.
BroadspectrumdrugsaffectbothGrampositive
andGramnegativecells.
Thenormalfloraisaffected,too.
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10
Fig.131
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11
AntibioticTarget1:CellWall
Cell wall is pep tido gl ycan , a repeating polymer of disaccharide,
tetra-peptide repeats cross-linked into a 3D matrix
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12
AntibioticTarget1:CellWall
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13
lactams:MechanismofAction
-lactams inhibit transpeptidase by mimicking its substrate,
the terminal D-AlaD-Ala
Transpeptidase attacks the -lactam ring of penicillin, forms a
covalent bond that is slow to hy dr olyze ; enzyme is deactivated
HariPurnomo,ANTIBIOTIKA,FARKIMII.
14
Bakteri..Dindingselbakteri..Peptidoglikan
SintesisPeptidoglikanada3tahap:
TahapI:PembentukanUDPNAcMurpentapeptida
TahapII:Pembentukanakseptordekapeptidamid
TahapIII:Pembentukanpeptidoglikan(salahsatu
bahanbakuDAlanilDAlanin)
(Penisilin,sefalosporinbekerjapadatahapini)
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
15
CH3
S
NH
O
CH
CH
C
CH3
CH
COOH
Penicillin nucleus
B-lactam ring
O
S
R
NH
O
CH
C H2
C
C
O
CH2
C
CH3
Cephalosporin nucleus
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
16
Peni c i l l i ns
O
R
CH3
S
NH
O
CH
CH
C
CH3
CH
COOH
B-lactam ring
Common nucleus
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17
.History
AlexanderFleming(1928)
InEngland,noticedthatS.aureusdidnotgrow
aroundacolonyofmoldonagar
ThemoldwasPenicilliumnotatum.
Heisolatedtheinhibitorysubstance.Calledit
penicillin.
Penicillinwasunstable.
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
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FloreyandChain(1940)
InEngland
Resumedstudyofpenicillin
Isolatedandpurifiedpenicillin
USAbecameinvolved
PenicillinusedduringWWII
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Penicillinisanantibiotic.
Antibioticisfromantibiosis,meaningagainst
life.
antibioticAsubstancethatisproducedbyone
microorganism(abacteriumorfungus)thatkills
orinhibitsthegrowthofanothermicroorganism.
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20
Majorproducersofantibioticsdiscovered
throughouttheyears:
Molds
Penicillium
Cephalosporium
Bacteria
Streptomyces
Bacillus
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
21
(a)Penicillins
Natural(PenG,PenV[oral])
bestvs.G+
betalactamaseresistant,butloweractivity
nafcillin,oxacillin,methicillin
expandedspectrum(G+andG)
ampicillin,piperacillin,mezlocillin,
ticarcillin
acidresistant(oral)
amoxycillin,PenV,oxacillin
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22
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Penicillins
O
Penicillin G
CH2
NH
O
Penicill in V
Ampicillin
CH2
CH
CH3
S
CH C H
CH
CH3
COOH
Common nucleus
Common nucleus
NH2
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25
R=
CH2
Benzil penisilin ( Penisilin G )
R=
OCH2
Fenoksimetilpenisilin
( Penisilin V )
NH2
R =
CH
A m p is ilin
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26
NH2
CH
R=
Amoksisilin
HO
OCH3
Metisilin
R=
OCH3
Cl
R=
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CH
HN
Kloksasilin
HariPurnomo,ANTIBIOTIKA,FARKIMII.
27
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H 3C
OH
OH
(S )
(S )
H 3C
H
H
(R )
H
(S )
(R )
N'
N "H
N'
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Penisilin
R
HariPurnomo,ANTIBIOTIKA,FARKIMII.
DAlanilDAlanin
29
StabilitascincinLactam
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30
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33
DegradasidenganLactamase
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DegradasidenganLactamase
S
N
H O
X
H
N
C
O
OH
H O
X
C
O
OH
E nzim
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HN
E nzim
HariPurnomo,ANTIBIOTIKA,FARKIMII.
35
Resistance:lactamaseEnzymes
36
Resistance:lactamaseEnzymes
HariPurnomo,ANTIBIOTIKA,FARKIMII.
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OvercominglactamResistance
(resistance)
slow to
hydrolyze
HariPurnomo,ANTIBIOTIKA,FARKIMII.
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ResistenLactamase
Lesstolerancetothesterichindrancenearthesidechainofamidabond.
Attacheddirectlytothesidechaincarbonylandbothorthopositionaresustitutedby
methoxyresistant
MovementofoneoftheOCH3toparaposition,puttingmethylenbetweenthearomatic
ring6APAsensitif
ResistanttoenzymedegradationbasedondifferentialSterichindrance
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39
Stabilitasterhadapasam
Stabilitasterhadapasam
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40
O
O
H
H 2C
C
H
(S )
H
(R )
(S )
(S )
N'
N "H
OH
H
C
CH3
(R )
N'
O
Cephalo spori ns
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DAlanilDAlanin
R
HariPurnomo,ANTIBIOTIKA,FARKIMII.
O
41
(b)Cephalosporins(lesssensitivetobetalactamases)
1stgen:G+action
cephalexin,cephalothin,cefazolin
2ndgen:G+andGaction,includingBacteroides,but
notPseudomonas
cefaclor,cefuroxime,cefoxitin
3rdgen:Gmostly,includingPseudomonas
canpenetratetheCNS,socanbeusedformeningitis
ceftazidime,cephotaxime,cephoperazone
4thgen:slightlyexpandedspectrum
cefepime,cefirome
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42
(c)monobactamsmonocyclicbetalactamring,soresistantto
betalactamases
effectivevs.Gonly,notG+oranaerobes
aztreonam
(d)carbapenems
broadspectrum(G+andG),butmaybetoxic
imipenem,meropenem(reducedtoxicity)
SideEffects(ofbetalactams):
allergy(pen>ceph>mono)
toxicity(carba(seizures)>ceph(thrombophlebitis)>
pen>mono
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Vancomycin:MechanismofAction
Vancomycin, the crucial drug of last resort, inhibits PG synth
by binding dir ectl y to the D-AlaD-Ala end of the peptide
- forms a cap over the end of the chain; blocks cross-linking
Capped peptides
cannot be cross-linked
Weak
cell walls
cells
die
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
44
Vancomycin:MechanismofAction
3D model of Vancomycin in
complex with D-AlaD-Ala
note cup-like
shape of Van
HariPurnomo,ANTIBIOTIKA,FARKIMII.
45
Vancom yci n
D-Ala
D-Ala
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46
VanResistance:DAlaDLactate
Vancomycin-resistant bacteria have peptidoglycan chains that end
in D -Ala D -Lac tat e, instead of the usual D-AlaD-Ala
(A) What genes are necessary to make this change?
(B) How does this confer resistance?
D -Ala D -Ala
HariPurnomo,ANTIBIOTIKA,FARKIMII.
e
47
GeneticsofVanResistance
5 gene pr oducts are required to produce Lac-terminal PG
- 2 sensor genes detect Van, turn on other 3 genes
- 2 synthesize the critical D-AlaD-Lactate piece
- 1 destroys the pool of D-AlaD-Ala in the cell (equilibrium)
VanH
VanA
reduction
VanX
hydrolysis
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48
Vancomycin:MechanismofAction
D-AlaD-Ala
D-AlaD-Lac
makes 1 le ss H- bo nd
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Resistance
HariPurnomo,ANTIBIOTIKA,FARKIMII.
Yo u die
49
GeneticsofVanResistance
Why did penicillin resistance appear in 2 years, but Van resistance
take 30 years to become a major health hazzard?
One answer: geneti c co mp lexity of resistance mechanism
Penicillin resistance requires the activity of one gene pr od uct
(-lactamase enzyme)
- usually 2-4 year lag when only 1 gene is involved
Van resistance takes 5 gen e pr oducts
- apparently delays development of infectious, highly resistant
strains when multiple gene products are involved
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
50
OvercomingVanResistance
chlorinated
bi-phenyl
substituent
HariPurnomo,ANTIBIOTIKA,FARKIMII.
51
OvercomingVanResistance
Approach #2: Screening combinatorial libraries for novel small
molecules that cl eave the D-AlaD-Lac depsipeptide
- Look for drugs that can effectively function like an enzyme
Combinatorial library of 300,000 tripeptide derivatives yielded
3 hits , all w/ an N-terminal serine & an intramolecular H-bond
Pharmacophore deduced from computer modelling studies
HO
O
NH2
N
SPr oC 5
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
52
(Vancomycin,teicoplanin[Eur])(Glycopeptides)
ModeofAction:blocktransglycosylation
Resistance:usealalactateratherthanalaalatoend
pentapeptidesidechain
:chromosomal(vanB)andplasmid(vanA)
genes
Uses:Staphylococci,Enterococci,notG
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53
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54
a c y lD a la n y lD
a
la
n
in
(R )
3HC
H
N
C
C
O H 3C H
(Z )
R1
NH
C
N
H
OH
H
C
N
H
CO2 C
CH R
HO
H2
C
(R )
CH3 O
Ar
C
H
H
R3
(R )
CombinewithSubstrat
V a n c o m y c in
14022007:09.0010.40
HariPurnomo,ANTIBIOTIKA,FARKIMII.
55
Mekanismekerjayangsejenisdengan
Vancomisin(mengikatDalanilDalanin):
RistocetinA&B,RistomysinA&B,
ActinoidinA&B,AvoparcinA&B,Antibiotik
A35512B
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
56
2.Bacitracin
ModeofAction:blocks~Pandde~Pofbactoprenol
Uses:topicalonlymainlyvs.G+,sousedin
conjunctionw/others
Sideeffects:poorlyabsorbed,renaltoxicity
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
57
Bacitracin
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58
Mekanismekerjabasitrasin:
Menghambatdeposforilasipiroposfatmembentuk
carrier,sehinggamemblokketersediaanMurNAc
pentapeptida(Sintesatahap2peptidoglikan)
Dindingseltidakterbentuk
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
59
Cycloserineandphosphonomycin
cycloserine:Dalaanalog,soinhibitsalanineracemase
:neurotoxic,sorarelyused(sometimesforUTI)
Mekanismekerja:
Sikloserinmiripdenganalaninstrukturnya.Adanyasikoserin
menyebabkan/menghalangipembentukanUDPNAcpentapeptida
(tahap1sintesapeptidoglikan)
Dindingseltidakterbentuk
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60
HH
O
HH
H
O
H
H
N
C
H
O
L A la n in
H
H
N
N
C
C
O
O
H
H
HH
H
H
HH
O
C N
(E )
S iklo se rin
D A la n in
H
H
H
O
C O
C
(E ) N
SA
ik lo
D
lasneinrin
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
61
U T P +N A ce tylg lu cosa m in e1 P
SintesisPeptidoglikanada3tahap:
TahapI:
PembentukanUDPNAcMurpentapeptida
p yro ph o sp ha t
U D P G lcN A c
H O 2C
H 2C
PPOE
3 HP
p h o sp h o e n o lp iru va te
d st...d st
Mekanismekerjaphosphonomycin:
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
62
H
H 3C
C
O
H O 2C
P O 3H
H 2C
p h o sph o n o m ycin
14022007:09.0010.40
PO 3H
p h o sp h o e n o lp iru vate
H O 2C
H
H 23 C
O
C
O
HariPurnomo,ANTIBIOTIKA,FARKIMII.
H
PO 3H
63
2.Disruptionofcellmembranefunction
Polymyxins
ModeofAction:dissolvephosphatidylethanolamine,a
specializedPLinGmembranes(ours,too)
Uses:toxic,sotopicalonly(ofteninconjunctionwith
bacitracinandneosporin)
14022007:09.0010.40
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64
14022007:09.0010.40
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65
3.InhibitionofProteinSynthesis
Examples:tetracycline
erytromycin
streptomycin
chloramphenicol
Tetracycline
(aromatic polyketide)
Erythromycin
(macrolide polyketide)
Kanamycin
(aminoglycoside)
14022007:09.0010.40
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66
Ribosom
Duetodifferencesinribosomes
Eucaryoticcellshave80S(60S+40Ssubunits)
ribosomes.
Procaryoticcellshave70S(50S+30Ssubunits)
ribosomes.
Examples:
Chloramphenicolanderythromycinbindtothe50S
subunit.
Tetracyclinesbindtothe30Ssubunit.
14022007:09.0010.40
HariPurnomo,ANTIBIOTIKA,FARKIMII.
67
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ReviewofInitiationofProteinSynthesis
1 3
2 GTP
30S
1
2
Initi atio n
Facto rs
GTP
f-mettRNA
Spectinomyci
n
mRNA
3
GDP + P i
P A
2
1
50S
1
2 GTP
Aminoglycosid
70S
30S
es
Initiation
Initiation
14022007:09.0010.40
HariPurnomo,ANTIBIOTIKA,FARKIMII.
Complex
Complex
69
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70
ReviewofElongationofProteinSynthesis
Tetr acyc lin
e
P A
Tu GTP
Tu GDP + Pi
Ts
GTP
Tu
Ts
Ts
Fusidi c A cid
P A
GDP
+
G
G GDP + Pi
GDP
GT
P
G GTP
P A
P A
Ery th rom yc in
14022007:09.0010.40
HariPurnomo,ANTIBIOTIKA,FARKIMII.
71
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72
TheActionofAntimicrobialDrugs
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73
Figure 20.4
1.Aminoglycosides(streptomycin,neomycin,
gentamycin,tobramycin)
ModeofAction:Bindto30Srib,blockinitiationby
preventingattachmentoftRNAfMet
Resistance:alteredP12ribosomalprotein,
aminoglycosidases,alteredpermeability(e.g.
Streptococci)
Uses:Genterics,ofteninsynergywith
cephalosporinsorpenicillins(facilitateentryofthe
aminoglycosides)
14022007:09.0010.40
HariPurnomo,ANTIBIOTIKA,FARKIMII.
74
14022007:09.0010.40
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75
2.Tetracycline(doxycycline)
ModeofAction:inhibitsbindingofaatRNAtotheAsite
oftheribosome(30S)
Uses:rickettsia,chlamydia,mycoplasmas
Sideeffects:toxicity,dizziness,ringinginears,
fluorescentteethinnewbornsreplacement
ofnativeflora
Tetracycline
H3C
OH
H3C
CH3
OH
OH
OH
OH
14022007:09.0010.40
Interferewithproteinbiosynthesisatthe
ribosomallevel:bindto30Sribosome
inhibitsubsequentbindingof
aminoacyltransferRNA
C ONH2
HariPurnomo,ANTIBIOTIKA,FARKIMII.
76
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78
Tetracycline
H3C
OH
H3C
CH3
OH
OH
OH
14022007:09.0010.40
OH
HariPurnomo,ANTIBIOTIKA,FARKIMII.
C ONH2
79
14022007:09.0010.40
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80
DegradationreactioninvolvetheC6hydroxylcleavageoftheCringinalkaline
solution(pH8.5)
stereoorientationoftheC4dimethylaminomoietyessentialforthebioactivity
Epimerizationproduce4epitetracyclineinactive
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81
3.Chloramphenicol
ModeofAction:inhibitspeptidyltransferase
reaction(50S)
Resistance:chloramphenicolacetyl
transferase(CAT)
Uses:nolongeradrugofchoice
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82
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84
50SSubunit
Ribosom
SeveralfunctionaldomainsmappedonE.Coli30Sand50Ssubunitsby
thetechniqueofimmuneelectronmicroscopy(CourtesyofDr.H.G.
Wittmann)
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HariPurnomo,ANTIBIOTIKA,FARKIMII.
85
30SSubunit
Ribosom
SeveralfunctionaldomainsmappedonE.Coli30Sand50Ssubunitsby
thetechniqueofimmuneelectronmicroscopy(CourtesyofDr.H.G.
Wittmann)
14022007:09.0010.40
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86
14022007:09.0010.40
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87
4.Macrolides(erythromycin,clarithromycin)
ModeofAction:bindstorRNAandinhibits
translocation(50S)
Resistance:methylationofrRNA
Uses:G+andsomeG
5.Lincomycin/Clindamycin
ModeofAction:sameasmacrolides
Uses:specificuseagainstanaerobes
Bacteroides)doesnotpenetrateCNS
14022007:09.0010.40
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88
6.Others:
Nitrofurantoin:inhibits30S,usedvs.
UTI,conc.inurine
Synercid=quinupristin+dalfopristin:
inhibits30S,usedtotreatVREand
VRSAintheUS(Streptograminin
Europe)
Linezolid:inhibits50S,usedtotreat
VREandMRSA
Methenamine:releasesformaldehydein
acidifiedurine,usedtotreatUTI
14022007:09.0010.40
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89
4.Inhibitionofnucleicacidsynthesis
Examples:Rifamycin(Transcription),
Antitbc
Quinolin(DNAreplication)
Nalidixicacid(DNAreplication)
Inhibitionofnucleicacidsynthesis
StopDNAreplication
Manyantiviraldrugsdothis.
Example:AZT
OrstopRNAsynthesis
Example:rifampicin
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4.DNAinhibitors
1.Quinolones(nalidixicacid)
ModeofAction:inhibitDNAgyrase
Resistance:alteredDNAgyrase,drugexclusion
Uses:notverysoluble,sousefluorinatedQsinstead
(ciprofloxacinandderivatives)vs.UTIandother(mostly)G
infections,butnotPseudomonas
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2.Rifamycin(rifampin)
ModeofAction:blocksRNApolymerase
Resistance:alteredRNApolymerasebsubunit
Uses:withisoniazidtodelayresistancein
Mycobacteria:crossesCNS,sousedfor
meningitis:blocksassemblyofpoxviruses
Sideeffects:excretedinsweatandurine(orange!)
3.Metronidazole
ModeofAction:unknownreactionproductbreaks
DNAstrands
Uses:antiprotozoal(Giardia):vs.anaerobic
bacteria(Bacteriodes,Clostridium)
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5.Actionasantimetabolites
Examples:Sulfanilamide
Trimetoprim
PABA
Sulfamethoxazole
Trimethoprim
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Folic Acid
OH
N
N
H2N
C H2
H
N
CH
C H2
PABA
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COOH
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C H2
C OOH
95
NH2
NH2
R1
R2
SulfacetamidHCOOH3
SulfadiazineH
R2
R2
SO2NH2
SulfanilamidHH
COOH
R1
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AntibacterialAntibiotics
CompetitiveInhibitors
Sulfonamides(Sulfadrugs)
Inhibitfolicacidsynthesis
Broadspectrum
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Figure 5.7
NH2
NH2
SO2NH2
COOH
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H 2N
PABA
...........................
OH
...........................
N
6,9 A
O
.
.
.
.
.
.
.
S
NH2
2,4
O ........................
.
.
.
.
.
.
.
.
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6,7
HO
.
.
.
.
2,3
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O ........................
.
.
.
.
.
.
99
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Figure 20.13
P teridin
PABA
SMX
E nzim dihidropteroat
sintetase
DHPA
SMX=Sulfametoksazole
TMP=Trimetoprim
PABA=ParaAminoBenzoicAcid
DHPA=DiHydroPteroat
DHFA=DiHydroFolicAcid
THFA=TetraHydroFolicAcid
LG lutam at
DHFA
T im in
TH F A
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TMP
M etionin,
glisin,adenin,
guanin
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