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robert hooke uses weak microscopes composed of same fundamental building blockcell cell - highly organized compartment that is held with plasma membrane in watery solution all cells arise from previous cells all organisms made of cells all cells are connected by common ancestry natural selection - survival of fittest- more offspring
double bond- share 2 triple- share 3 CH4-tetrahedron H20- bent molecular formula- numbers and types of atoms in mlcl structural formula-shows the bonds ball and stick - shows angles space filling models-actual representative of model
acids - proton donor base - proton acceptor ph= -logH H= antilog(-ph) Buffers- maintains pH by becoming weak base or acid
>50- protein
Tertiary structure- created from interactions between R groups causes peptide bonded backbone to bend and phone 3d shape of polypeptide hydrogen bonds between R group and carboxyl when hydrophobic chains are close to each other makes van der waals interaction(weak chrg) covalent bonds between sulfur containing R groups makes disulfide bond ionic bond form between full opposing charges Quaternary structure- combination of several polypepties held together by interactions of R groups, bonds, peptide backbone protein with 2 polypeptide called dimers *refer p 59 protein structure is hierarchical. Higher lvls based on previous ones folding is spontaneous in some cases- bonds that occur makes mlcl more stable so it can be exergonic denature- protein can be unfolded and no longer functional folding facilitated by specific protein called molecular chaperones proteins function depends on shape; shape depends on folding
Enzymes 3.5
brings substrates together in precise orientation into a transition state and finally products activation energy- nrg required to reach transition state need kinetic energy to reach the state so higher temp - faster catalyst - lowers activation energy can increase rxns up to trillions times faster enzymes bring reactants together and stabilize transition states. Proposed theory - lock and key substrate fits into active site of enzyme actual- induced fit theory enzyme changes shape slightly to bind substrate interactions with R groups at active site lowers activation nrg *refer p 64 enzyme catalysts - initiation(precise collision), transition state facilitation(lower nrg), termination(products less affinity so releases) Cofactors and organic mlcls called coenzymes help with enzymes they stabilize transition state enzymes are regulated by mlcls that change the protein structures competitive inhibition- slows down rxn by competing with substrates allosteric regulation- mlcl binds with enzyme and changes the shape of it substrate concentration low - increases in linear fashion substrate concentration high- levels out at max speed (saturated) pH and temperature affects enzyme for better or for worse
Lipids 6.1
carbon containing compound which are non polar and hydrophobic can still dissolve in liquids with non polar organic compounds mlcls that contain only H and C - hydrocarbons non polar fatty acid- type of compound consists of hydrocarbon chain bonded to carboxyl group key building blocks of lipids Lipids defined by solubility so structures varies fats- 3 fatty acids linked to glycerol thru dehydration synthesis joined by an ester linkage page 101 AKA triglycerides
fats are not polymers and fatty acids arent monomers steroids- differ from others cuz they have cholesterol ( 4 ring structure) phospholipid- glycerol +phosphate group+ 2 isoprenes or fatty acids makes up plasma membrane membrane forming lipids have polar, hydrophilic region and non polar hydrophobic region amphipathic- contains both hydrophilic and phobic elements. Phospholipids and cholesterol responsible for membrane
active transport by pumps- transport against electrochemical gradient proteins are called pumps sodium potassium pump- Na inside + P outside K outside inside releases P lipid layer + protein makes internal environment diff from outside
Peroxisomes globular organelles that have single membrane, grow and divide independently centres for oxidation reactions glyoxisomes- packed with enzymes that convert prod of photosynthesis into sugar Lysosomes- solid waste processing and materials storage in plants, fungi cells they are referred as vacuoles in animals they are digestive centers its lumen is acidic because enough hydrogen ions main pH of 5 each of these are specialized for breaking macromolecules digestive enzymes collectively called acid hydrolasis phagoctyosis- cell eating delivered inside membrane to lysosome autophagy- same eating damaged organelles are surrounded by membrane and recycled receptor mediated endocytosis- creation of lysosomes through binding of macromolecules, activation of proton pumps that lower pH and receiving digestive enzymes from golgi apparatus endocytosis- inside cell act/ taking in of material from outside of cell phagocytosis, receptor mediated endocytosis, pinocytosis( cell drinking) vacuoles are large compared with lysosomes and contain up to 80% of plant cell volume have enzymes specialized for digestive but most act as storage depots mitochondria- produces ATP(chemical energy required for work) up to millions may be present double membrane cristae- series of sac like mitochondria matrix- solution inside the inner membrane contains independent small chromosome grow and divide independently of cell manufactures own ribosome Chloroplasts- sunlight is converted to chemical energy double membrane thylakoids- single flattened vesicles grana- stacks of thylakoids stroma -region inside chloroplast contains independent genetic material divide independently cytoskeleton- major structural feature containing proteins and fibres cell wall- has an outer cell wall in addition to membrane in fungi, algae, plants rods or fibres composed of carbohydrate run thru stiff matrix made of proteins some plant cells create secondary cell wall called lignin lignin forms branching almost impossible for enzymes to attack organelle's membrane and its complement of enzymes correlate with function differential centrifugation- technique to isolate cell components for analyzing *refer p 137