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catalyst
H H2O
products
+ R O O R'
acid
+H OH OH
alcohol
water
ester
H
reaction mechanism
+ HO R' OH H R O OH R' ~H H O H R O OH R' H2O
O R' OH
elementary steps
net reaction describes the starting materials and the products of a reaction reaction mechanisms describes the individual elementary steps of the reaction catalyst takes part in the reaction mechanism but is retained unchanged
Organic Reaction Mechanisms 91
G R = G R + RT ln
[RCOOR][H2 O] [RCOOH][ROH]
G R > 0 G R = 0 G R < 0
endergonic reaction, runs from right to left reaction is in equilibrium exergonic reaction, runs from left to right
Gibbs free reaction energy G determines whether and in which direction the reaction runs standard Gibbs free reaction energy G at standard conditions (1 bar, 25C, reactants 1 mol/L)
R R
Organic Reaction Mechanisms 92
G R = G R + RT
ln
=0
KR =
pK R = log K R
pK R
G R
= RT ln K R G R
RT
equilibrium constant K is the ratio of reactant concentrations in equilibrium standard free reaction enthalpy G determines the position of the equilibrium (at given temp.)
R R
Organic Reaction Mechanisms 93
Gibbs-Helmholtz Equation
exothermic reactions, sum of all bond energy changes negative endothermic reactions, sum of all bond energy changes positive exotropic reactions, disorder, degrees of freedom decrease endotropic reactions, disorder, degrees of freedom increase
standard reaction enthalpy H is negative (advantageous) if bonds in products are stronger standard reaction entropy S is positive (advantageous) if the disorder increases
R R
Organic Reaction Mechanisms 94
reaction kinetics refers to how fast reactions proceed, i.e., the reaction rates rate laws describe the relation between substrate concentrations and reaction rates
rst order
r 1f = k 1f [ A ]
monomolecular
A
monomolecular
B
rst order
r 1r = k 1r [B ]
second order
r 2f = k 2f [ A ][B ]
bimolecular
A+B
bimolecular
C+D
second order
r 2r = k 2r [C ][D ]
third order
r 3f = k 3f [ A ][B ][C ]
trimolecular
A+B+C
monomolecular
D
rst order
r 3r = k 3r [D ]
third order
r 4f = k 4f [ A ]2 [C ]
trimolecular
2A+B
bimolecular
2C
second order
r 4r = k 4r [C ]2
reaction rates r are proportional to the product of the concentrations of all reactants rate constants k are the proportionality factors reaction order is the sum of all exponents of the concentrations of all reactants in the rate law molecularity is the number of molecules actually involved in an elementary reaction for simple, single-step reactions, the molecularity determines the reaction order
Organic Reaction Mechanisms 95
in thermodyamic equilibrium, concentrations of reactants do not change anymore forward and reverse reaction are equally fast
r 2f = k 2f [ A ][B ]
A+B C+D
r 2r = k 2r [C ][D ]
r 2f = r 2r
k 2f [ A ][B ] = k 2r [C ][D ]
k 2f k 2r = [C ][D ] =K [ A ][B ]
the ratio of rate constants of forward and reverse reactions determines equilbrium constant K the faster the forward reaction (relative to reverse), the larger is K the faster the forward (relative to reverse) reaction, the more the equilibrium is on product side
Organic Reaction Mechanisms 96
reaction proles are simplied energy diagrams of chemical reactions, following the lowest
energy path from the starting materials to the products in the energy hypersurface
Br + H H Br H + H
S P
S dHH dHBr
Rkt
starting materials (S) and products (P) are stable compounds, i.e., energetic minima transition states () are saddle points in the energy hypersurface, maxima in the reaction prole
Organic Reaction Mechanisms 97
reaction proles are simplied energy diagrams of chemical reactions, following the lowest
energy path from the starting materials to the products in the energy hypersurface
Br + H H Br H + H
S P
S dHH dHBr
Rkt
starting materials (S) and products (P) are stable compounds, i.e., energetic minima transition states () are saddle points in the energy hypersurface, maxima in the reaction prole
Organic Reaction Mechanisms 98
exergonic reaction
Gf < Gr
endergonic reaction
Gf > Gr Gf = Gr > 0
Gf = Gr < 0
fast slow
slow fast
Rkt
Rkt
= G G G R r f
KR =
Organic Reaction Mechanisms
kf
r f = rr
kf kr
k f [S]eq = k r [P]eq
kr
[P]eq [S]eq
= KR
99
Polanyi Principle and Hammond Postulate for mechanistically similar, single-step reactions
late transition state higher activation energy early transition state lower activation energy
S
G3f > G2f = G2r > G3f G3f > G2f = 0 > G3f
E 1
3 2 P3 P2 P1
endergonic
exergonic
Rkt
Polanyi Principle: Dierence in activation energies proportional to dierence in free enthalpies Hammond Postulate: Energetically more similar states are also geometrically more similar
Organic Reaction Mechanisms 100
Multistep Reactions
elementary reactions are steps between the minima in the reaction prole, i.e., between starting
materials (S), intermediates (I), and products (P), seprated by transition states ().
E
elementary step 1 elementary step 2
1
G1f > G
1r
2
G2f < G2r
slow
fast
Gf = Gr < 0
P Rkt
overall reaction rate and molecularity are controlled by slowest, rate-determining step typically, the generation of the reactive intermediate is the rate-determining step intermediate is a good approximation for the transition state of the rate-determining step
Organic Reaction Mechanisms 101
S
Gf = Gr < 0
Gf = Gr < 0
P Rkt
P Rkt
change in standard Gibbs free reaction energy G leads to change of equilibrium concentrations in reality, even more drastic because ln K ~ G
R R
Organic Reaction Mechanisms 102
Gf
Gr Gf
Gf = Gr < 0
S P Rkt
Gr
Gf = Gr < 0
P Rkt
change in Gibbs free energy of transition state G leads to change in reaction rates in reality, even more drastic because ln k ~ G
Organic Reaction Mechanisms 103
Gf Gr Gf
Gf = Gr < 0
S P Rkt
Gr
Gf = Gr < 0
Rkt
104
E
Gf Gr
E S
Gf = Gr < 0
Gf = Gr < 0
P
for endotropic reaction (S>0): equilbrium less on the product side
P Rkt
for endotropic reaction (S>0): equilbrium more on the product side
Rkt
change in temperature changes equilbrium (due to Gibbs-Helmholtz equation G = H T S) change in temperature also causes reaction rates because of thermal energy of molecules
Organic Reaction Mechanisms 105
classication according to reaction type, i.e., the type of changes to molecular topology
R1 X R2 R3
Substitution
+ Y X +
R1 R2 R3
Substitution Addition
+X +Y R2 R1 X Y R R4 3
R1 R2
R3 R4
Elimination Addition
+ Y
R1 R2
R3 R4
Y R1 R R2 R4 3
Elimination
R2 X
Rearrangement
Y R3
R1
R2 X
Rearrangement
Y R1
R3
107
bond homolysis
Y R R
R1
C R3 R2
R1 C R2 R3
R1 C R3 R2
carbon radical sp2 or sp2 or in between planar or pyramidal radical mechanisms radical starters
108
Nucleophilic Substitutions (SN Reactions) SN1 Mechanism: leaving group leaves rst (and allows nucleophile to come in subsequently intermediate
LG R1 R3 R2 + Nu
nucleophile
Nu + R1 C LG R2 R3
electrophilic center
SN2 Mechanism: nucleophile attacks (and forces leaving group to leave simultaneously)
pure enantiomer
1
G1f > G
1r
planar, achiral
2
G2f < G2r fast
racemic mixture
slow
Gf = Gr < 0
Rkt the departure of the leaving group generates a carbokation as a true intermediate the formation of the intermediate is energetically disfavorable, rate-determining good leaving group, stabilized carbocation will decrease energy of the intermediate (favorable)
111
leaving group quality is approximately inverse to the basicity of the obtained anion scale by pK values of the corresponding acids
A
O O S H O CF3 15 > O O S H O Me 10 > O O S H O 7 O > H O 1 CF3 > H O 5 O Me
H I 10
>
H Br 9
>
H Cl 7
>
H F 3
H F 3
>
H OH 16
>
H NH2 38
>
H CH3 48
residues with corresponding pK < 0 are good leaving groups residues with corresponding pK < 10 are moderate leaving groups residues with corresponding pK < 20 are poor leaving groups residues with corresponding pK > 20 are not leaving groups at all
A A A A
Organic Reaction Mechanisms 112
O O S R O CF3 R OTf
>
O O S R O Me R OMs
>
O O S R O R OTs
O Me
R OTFA
R OAc
methanesulfonate mesylate
4-toluenesulfonate tosylate
tri uoroacetate
acetate
113
> >
R H H H H H R Si R H R R H R H
> >
R R R
>
>
> >
> >
>
>
>> >
triphenylmethyl trityl
diphenylmethyl
secondary carbon
primary carbon
phenyl (sp2)
S 1 reactions very favorable in benzyl or allyl position S 1 reactions also observed on highly substituted sp carbons S 1 reactions never observed in phenyl position (or other sp or sp carbons)
N N N 3 2
Organic Reaction Mechanisms 114
the more delocalization (donor groups, larger aromatic systems), the better stabilization
H H RO RO H C H H RO C H H RO H H RO H CH H
115
H H C H
R R
H H C H
R R
H H C H
R R
H H C H
R R
the more alkyl groups (the higher substituted), the better stabilized is carbocation stabilization by decreasing electronegativity (and size) of cationic center
R R Sn R > R R Si R > R R C R
EN 1.9
EN 1.9
EN 2.5
116
moderate nucleophile
+ MeOH Me O H H OMe
trityl chloride
methanol
moderate nucleophile
CH2 + Na O O CH3 Na Br OAc
benzylbromotri ate
sodium acetate
well-stabilized cation
117
SN2 Mechanism
sp3 R1 C LG R2 R3 R1 Nu R3 R2 LG sp3 R1 Nu C R R3 2
LG
Nu
pure enantiomer
E
Nu R1 C R2 R3 LG *
E
Nu R1 C R2 R3 LG
Nu (S) (P) Nu *
C R R3 2
R1
LG
C R R3 2
R1
LG
nucleophile interacts with antibonding * orbital of the CLG bond back-side attack and concerted departure of leaving group under stereoinversion good nucleophile (and good leaving group) will favor S 2 reaction
N
Organic Reaction Mechanisms 118
Nucleophilicity
there is no simple, rational nucleophilicity scale! No relation to basicity! nucleophilicity is a kinetic parameter, basicity is a thermodynamic parameter determination of nucleophilicity n according to Pearson:
Nu + H3C I
kNu
Nu CH3
MeOH
H3C I
kMeOH
MeO CH3
H I
k Nu n = log k MeOH
R2P RS R3C > > > > R2N RO R2N > > > > R3P R2S RO > > > > R3N R2O F I H H C O H > Br > Cl > F
H > R C O H
H > R C O R
R > R C O R
119
Br Br
+ EtO Br Br
OEt
OMe Br Br Br
OMe
+ EtO Br
Cl
OTf
+ EtO TfO Cl
OEt
Cl
Si
Cl
+ EtO Cl Cl Si
OEt
120
(HOMO)
* (LUMO)
acid halides
acid anhydrides
ketones
aldehydes
esters
amides
acids
carboxylates
aldehydes (H) and ketones (R) have no leaving groups amides (NR ), acids (OH), and carboxylates have very poor leaving groups acid halides, anhydrides (and some esters) have good (or at least moderate) leaving groups reminder: leaving group quality strictly controlled by basicity of the leaving group anion!
2
Organic Reaction Mechanisms 121
carbonyl carbons are very reactive electrophilic centers carbonyl carbons are sp hybridized, coordinatively unsaturated
2
sp2 O C LG + Nu
sp3 O C Nu LG R +
sp3 O C LG Nu R LG
sp2 O C LG
R or + Nu
E 1
G1f > G1r slow
2
G2f < G2r
fast
Gf = Gr < 0
P Rkt
addition of the nucleophile prior to cleavage of the leaving group is possible, advantageous!
Organic Reaction Mechanisms 122
acid chlorides
O R O O R O
pKA (HCl) = 7
O R O O R
O Cl
H3C
O O S Cl
acid anhydrides
F O R F O F F F F O
pKA (RCOOH) 4
F F F F F O F C F F F etc.
H3C
Cl
pKA (PfpOH) 6
O O N O O O N
active ester
etc. O
N-succinyl esters
123
CH3
S O O O
OTs
tosylation
O OH NH2 H3C
O HO HN
O CH3 Ac2O
CH3 O OH NHAc
acetylation
124
dicyclohexylcarbodiimide (DCC)
N C N
+ HNEt3 NEt3
O R N H R' + N H
O C
N H
peptide
125
olens are (weak) nucleophiles and react with electrophiles to form carbocations
H R H H El H R El HH + Nu RH Nu El HH
reactivity order
R OR > R R R > R R > Ph > R R > R > COOH > Cl
127
Examples
hydrohalogenation of olens
H Br
Br H
hydration of olens
H HSO4 H2O
OH H
Br Br
128
R3 C H
C R 1
R2
C R 1
R2
backside attack
* (LUMO)
R4 3 C H R C R 2 1
E
G1f > G
R4 3 H
R C R 2 1
(HOMO)
R4 3 C H C R 1 R2
1r
1
slow
2
G2f < G2r
fast
Gf = Gr < 0
electrophile adds to double bond so that more stable cation is formed nucleophile attacks from the other side
Organic Reaction Mechanisms
Rkt
129
H H H Ph H Br H
H H Br
H H H Ph H
E 2
G2f < G2r fast
Ph H Br
H Ph H Br
Ph H Br
1 I
G1 > G1 slower slow
1 2
G2f < G2r
fast
S P
Gf < Gr
P Rkt
electrophile adds to double bond so that more stable cation is formed IMarkovnikov rule: in HX addition, X is added to the higher substituted carbon (the more you
have, the more you get)
Organic Reaction Mechanisms 130
Ph H Br Ph H
Br H Me Me H
(S) (R)
Ph H Br Br Ph H
Me
+
(R) (S)
Br
Br
Br H C (Z) H C Ph Br Br H Me Me H
+
H Ph Br H Ph
Br H Me Me H
(R) (R)
H Ph Br Br H Ph
Me
+
(S) (S)
Br
Br
electrophilic additions are diastereospecic, i.e., an olen with a given conguration (E or Z) will
specically be transformed into one diastereomer of possible adducts (a pair of enantiomers)
Organic Reaction Mechanisms 131
Elelctrophilic Addition
+ Nu Nu H H El
H H
El
H El H H El
Elelctrophilic Substitution
electrophilic addition leads to loss of aromaticity, energetically disfavorable electrophilic Substitution re-establishes aromatic system
Organic Reaction Mechanisms 133
Examples
bromination
H Br Br + FeCl3 Br + FeBrCl3 !+ ! Br Br FeCl3
H2SO4 H2O
SO3H
HSO3 HSO4
NO2
NO2 H3O
2 HSO4
134
H El
complex
complex
E 1
G1f > G1r slow
2
G2f < G2r fast
0 S
P
Gf = Gr < 0
addition product
substitution product
Rkt
in electrophilic aromatic substituions, the most acidic hydrogen is replaced with an electrophile
Organic Reaction Mechanisms 135
RO
RO HC
RO CH
RO
H C
RO
RHN
>
RO
>
>
Br
>
Cl
> >
Br Br RO + FeCl3 RO
Br + RO Br + RO Br
para major
meta none
ortho minor
substituents with +M eect direct the electrophile into ortho or para-positions substituents with +M eect increase electron density, nucleophilicity, reactivity
Organic Reaction Mechanisms 136
O RO RO
O RO HC
O RO CH
H C RO
O O S RO
>
O N
O > RO > RN H
O > HO
O > > O
sulfonate
nitro
carboxylic esters
Br Br
carboxylic amides
Br +
carboxylic acids
carboxylates
O2N
+ FeCl3
+ O2N Br O2N Br
O2N
para traces
meta major
ortho traces
substituents with M eect direct the electrophile into meta-positions substituents with M eect decrease electron density, nucleophilicity, reactivity
Organic Reaction Mechanisms 137
-Hydrogen Eliminations
most common are eliminations of hydrogen (H) and leaving group (LG) on adjacent carbons
E1 mechanism: leaving group leaves rst, hydrogen leaves subsequently
LG H R3 H C C R H 1 R2 H
H # " R2 R R3 C C 1 LG H
Base ! + ! H ! !+ R 2 R R3 C C 1 H ! LG
R3
R4 C
R C R 2 1
ole n
E1cb mechanism: base rst removes hydrogen and generates conjugate base, then leaving group leaves
E1 Elimination
H (base) R2 H R R3 C C 1 LG H LG H R3 H C R C R 2 H 1 + Nu R2 H H Nu R R3 C C R2 + R3 C C 1 Nu H H R1 R3 R4 C R C R 2 1
SN1 Substitution
E1 eliminations are inevitable side reactions of S 1-type substitution reactions! Factors: both: good leaving group, stabilized carbocation (identical intermediate!) E1: absence of a nucleophile, non-nucleophilic base (if any), many or acidic -hydrogens S 1: presence of a (good, not too basic) nucleophile, few or non-acidic -hydrogens
N N
Organic Reaction Mechanisms 140
E1cb Elimination
+ Base H Base R2 H R R3 C C 1 LG H + Nu H R2 R3 C C R 1 H LG Nu H Nu C C R3 R2 H R1 R2 R R3 C C 1 LG H LG R3 R4 C R C R 2 1
SN2 Substitution
eliminations are often-observed side reactions of S 2-type substitution reactions! however, they do not share the same intermediate E1 /E2: moderate/poor leaving group, strong non-nucleophilic base, acidic -hydrogens S 2: good, non-basic nucleophile (e.g., I , RS , PR , H O), few or non-acidic -hydrogens
N cb N 3 2
Organic Reaction Mechanisms 141
Non-Nucleophilic Bases
N Li
Si
Si Li
N N
N N
N N
non-nucleophilic bases have a high pK (of BH) but are strongly sterically hindered!
A
Organic Reaction Mechanisms 142
initiation
Cl Cl
2 Cl
propagation
CH3 + Cl
CH2 + H Cl
CH2 + Cl Cl
CH2Cl
+ Cl
product
termination reactions
2 Cl
Cl Cl
CH2 + Cl
CH2Cl
product
CH2
CH2 CH2
side product
144
initiation
Br Br
2 Br
propagation
H C
+ Br
H C Br
Br
Br + Br Br
Br + Br
product
termination reactions
H C
2 Br
Br Br Br
Br + Br H C BrH2C CH
Br
product
Br
CH2Br CH
side product
145