INTRODUCTION Microbial evolution is the study of the patterns and processes that affect the dynamics of microbial diversity

over time. Darwin defined evolution as change in linage of populations between generations. Microbial communities are groups of microorganisms that interact and, together, accomplish more than those same organisms would separately.

Models of evolutionary processes postulate that new alleles appear in populations through random spontaneous mutation. Alleles that confer a competitive advantage in particular environments are selected and populations can be taken over by individuals expressing these advantageous mutations. Occasionally, a mutation arises that confers a selective advantage on a cell. This cell can out compete its siblings and replace the population with its own progeny, in a process sometimes referred to as periodic selection. It is generally assumed that the result of these periodic selections is a complete takeover of the culture by cells of a single genotype. It was hypothesized that the appearance of deferent types of spontaneous mutations is influenced by evolution genes which could act as generators or modulators of the frequency of genetic variation. New evidence for the existence of deferent sets of evolutionary mechanisms arose from the information of the first complete genomic sequences of deferent strains of Helicobacter pylori, Escherichia coil, Salmonella typhimurium and Neisseria meningitidis. http://www.pnas.org Ecology is the scientific study of the relations that living organisms have with respect to each other and their natural environment. Variables of interest to ecologists include the composition, distribution, amount (biomass), number, and changing states of organisms within and among ecosystems http://en.wikipedia.org/wiki/Ecology Biosphere is the global sum of all ecosystems. It can also be called the zone of life on Earth, a closed (apart from solar and cosmic radiation) and self-regulating system. http://en.wikipedia.org/wiki/Biosphere

Role of microbial life in evolution Surface Origin Hypothesis One hypothesis for the origin of life is that the first membrane-enclosed, selfreplicating cells arose out of a primordial soup that was rich in organic and inorganic compounds in a warm little pond. This hypothesis is unlikely as th e surface conditions of early Earth would have been too hostile for life Subsurface Origin Hypothesis An alternative hypothesis is that life originated at hydrothermal springs on the ocean floor, well below earths surface. Conditions here would have been much less hostile and more stable Early Metabolism From the time of its formation, the early ocean and all Earth was anoxic .The early energy-generating metabolism of primitive cells would have been anaerobic. The first cells may have been anaerobic autotrophs, obtaining their carbon from CO2 and their energy from electrons used to reduce carbon dioxide to cellular material from H2. Reactions with the substrate ferrous iron, which was abundant on early earth, have also been proposed as energy-yielding reactions to primitive organisms. These early forms of chemolithotrophic metabolism would have supported the production of large amounts of organic compounds from autotrophic CO2 fixation. Microbial Diversification: Consequences for Earths Biosphere Metabolic Diversification Using information obtained from DNA to estimate a timescale, LUCA, the last universal common ancestor, may have existed as early as 4.25 billion years ago .Phototrophy arose somewhat later, about 3.2 billion years ago, and only in Bacteria. The Rise of Oxygen: Banded Iron Formations Molecular and chemical evidence indicates that oxygen-generating cyanobacteria first appeared on Earth about 2.7 billion years ago. The O2 that cyanobacteria produced did not begin to accumulate in the atmosphere until it reacted with

reduced materials, especially iron in the oceans. When O2 began to accumulate in the atmosphere, major evolutionary events started. New Metabolisms and the Ozone Shield The evolution of oxygenic photosynthesis caused the atmosphere to gradually change from anoxic to oxic. During this time, organelle-containing eukaryotic microorganisms evolved. The formation of ozone from O2 provided a barrier preventing much of the ultraviolet radiation of the sun from reaching the earth. Endosymbiotic Origins of Eukaryotes Origin of Eukaryotes Geological evidence from microfossils indicates unicellular eukaryotes arose on earth about 2 billion years ago. Endosymbiosis A wellsupported hypothesis for the origin of the eukaryotic cells is that of endosymbiosis, which states that the mitochondria and chloroplasts of modern-day eukaryotes arose from the stable incorporation into another type of cell of a chemooorganotrophic bacterium, which carried out facultative aerobic metabolism, and a cyanobacterium, which carried out oxygenic photosynthesis. The overall physiology and metabolism of mitochondria, chloroplasts and the sequence and structures of their genomes support the endosymbiosis hypothesis. It can be argued that shallow microbial mats and biofilms are the most appropriate systems for modeling early life, as the high metabolic diversity and spatial separation of metabolisms of these arrangements closely reflect fossilized examples of early microbial communities. Microbial communities that dwell in marine sediments can be construed as biofilm or mat communities, given that these communities dwell on the surfaces of sediment particles (like biofilms) and can form thick accumulations of interacting cells (like microbial mats). Marine microorganisms possess a number of metabolic capabilities that cannot be found in terrestrial microorganisms. As in other ecosystems, the geochemical habitat drives the evolution of different metabolic capabilities in the marine environment. For example, cold environments near the arctic drive different adaptations than high temperature, high pressure habitats near hydrothermal vents. Methane seeps are another example of a uniquely marine environment that has motivated novel metabolic capabilities. In methane seeps, high sulfate

concentrations combine with high methane concentrations to favor the anaerobic oxidation of methane, a metabolism found only in the oceans. Resistance genes may arise from microbial evolution, as a result of natural selection organisms develop the capability of antimicrobial resistance where they develop the ability to evade toxic effects of an antimicrobial agent. When these genes are passed on to other organisms through gene flow they confer the same advantage in the new individual. Evolution in microorganisms confers them with a survival advantage of adaptability to the rapidly changing environment. Viruses can also play a role in the volution of host cells by lysogenic conversion, a phenomenon in which a phage changes the phenotype of a host cell by either introducing genetic material into the hosts genome or by other means. It has been found, for example, that marine viruses can carry the genes necessary for photosynthesis, and that these genes are regularly transferred between host cells of Prochlorococcus. This temporary storage in viruses and the efficient shuffling of the genes among Prochlorococcus species probably has had a profound impact on the evolution of these photosynthesis genes and on the ecology of Prochlorococcus. http://academy.asm.org

Role of microbial life in ecology Most of the direct interactions marine microorganisms have with larger organisms fall into one of two broad categories: symbiosis or pathogenesis. Beneficial microbial symbioses have enabled many invertebrate species to take advantage of habitats that would otherwise be unavailable to them. Invertebrates in these relationships may also enjoy the benefits of bioactive compounds microbes may produce to prevent befouling or to ward off predators. Marine viruses are found in surprisingly high numbers in seawater, but it is likely that these populations are in equilibrium with their host populations. The metabolic diversity of marine microorganisms allows them to assume many roles in the biogeochemical cycles that other organisms cannot complete. Although the exact contributions of marine microbes to the biogeochemical cycles is uncertain, because of their metabolic capabilities and their sheer numbers, marine microorganisms are thought to be major players in every cycle relevant to life. It is estimated that if the oceans were emptied of microbes, the carbon dioxide in earths atmosphere would increase sevenfold. Moreover, half of the microbiallymediated nitrogen fixation occurs in the oceans, and nitrification and denitrification, two key processes that set the pace of the nitrogen cycle, are carried out by microbes. Marine microbes are also able to adapt to the many extreme environments in the where they carry out many of the steps in these biogeochemical cycles, making them the workhorses of the biosphere. The owners of a diverse portfolio of possible activities, microbes provide most of the planets metabolic capabilities that keep elemental cycles in motion. The metabolic rates microbial communities are also high. The cycles of nitrogen, oxygen, carbon, sulfur, phosphorous, iron, and other bioelements that sustain life on this planet are driven, in part, by the microorganisms. Microbes are capable of using every natural compound on the planet and most of the human-made compounds as well. It is this metabolic flexibility that secures microbes importance in the cycling of the bioele ments. Microorganisms control the rate limiting steps of the cycles that no other organisms can execute. Microbes also strengthen the feedback systems that increase the stability of the cycles of the bioelements. The details of many key processes in the bioelemental cycles remain unknown, and it is largely unknown which microbes are the largest contributors to these cycles, or if it is even possible for one species to be dominant.

Most marine ecosystems are fueled by the regeneration of nutrients processes mediated by marine microorganisms. Microbes also play more direct roles in the health of corals and other marine organisms. For example, corals die when the bacteria that live on their surfaces are removed, although the mechanism behind this observation is not known. Also, bacteria associated with squid eggs have been shown to protect the eggs from fungal infection. They also play a role in displacement of other organisms, for example biofilm bacteria are known to broadcast attraction cues that affect the settlement of invertebrate larvae in those biofilms. Marine microbes may also play a role in cloud formation by cycling compounds such as dimethylsulfide into the atmosphere. A constant efflux of methane from the surface of the oceans has been detected, and although the process is not entirely understood, it is undoubtedly microbially-mediated. Although terrestrial organisms comprise the vast majority of the biomass on the planet (3,200 gigatons or more; that is, 1015 grams), marine plankton (which weigh in at about 0.4 gigatons) carryout 45% of the total oxygen respiration on earth. These microbe-induced changes introduced a new era of chemistryon the earthone based primarily on redox chemistry, the shuttling of electrons from one molecule to another. Redox chemistry is now the basis of the balanced biogeochemical and climatological cycles that sustain life on this planet. Potential applications for marine microorganisms in ameliorating environmental degradation also exist. http://academy.asm.org It became apparent that bacteria of a certain species living in close association with different plants either as associated rhizosphere bacteria or as plant pathogens or symbiotic organisms typically reflect this relationship in their genetic relatedness. The observed bacterial microdiversity reflects the conditions of the habitat, which is selected for by better adapted forms. In addition, influences of spatial separation on specific groupings of bacteria are found, which argue for the occurrence of isolated microevolution. http://www.bashanfoundation.org

Symbiosis between a microbe and a marine invertebrate affords the microbe shelter, nutrients, and possibly a route for reproduction and dispersal, and offers the host a variety of benefits. A number of marine invertebrates, including species of corals, sponges, squids, shipworms, and others, are associated with unique species of bacterial and/or archaeal symbionts. In some cases, one invertebrate species may be host to many, possibly hundreds, of unique microbial species, a detail that has important implications for marine microbial diversity considering the fact that about 1,000 coral species and more than 5,000 sponge species populate the oceans. Symbioses with bacteria and/or archaea have enabled some marine invertebrates to exploit habitats that would otherwise be unavailable to them. Hydrothermal vents, for example, represent an extremely inhospitable environment to the unprepared tube worm, but the tube worms that thrive in these sulfur-rich, oligotrophic zones (low in organic carbon) harbor chemoautotrophic bacteria that synthesize organic carbon using the energy from respiring reduced inorganic sulfur compounds. The bacteria provide the organic compounds to their hosts, allowing the worms to live on carbon from inorganic sources and opening up a new world of habitats for the worms. Other examples of symbionts that have enabled invertebrates to take advantage of a new environment include nitrogenfixing, cellulose degrading bacterial symbionts, which have allowed their shipworm hosts to live on a diet of wood, and luminescent bacterial symbionts that enable squid to hunt in moonlit waters without casting a shadow that could be detected by predators. Many highly bioactive compounds have been isolated from marine invertebrates, including a number of materials with biomedical or industrial significance. It is now known that, in many cases, these substances are produced by symbiotic microbes rather than by the invertebrates themselves. Microbial symbionts synthesize many secondary metabolites, e.g. bryozoan and sponge species. Bioactive compounds produced by microbial symbionts may be useful to humans in any of a variety of ways. The light-driven proton pump proteorhodopsin, which is found only in marine bacteria, is thought to play an important role in the energy balance of the biospherebecause of its ability to efficiently generate energy from light. The diversity of marine viruses is not limited to bacteriophages (viruses that infect and lyse bacteria). Many other forms of viruses, including DNA and RNA viruses with a wide variety of different sizes, host ranges, and biological properties.

Marine viruses likely play a number of important roles in the ecology of marine microbes. Obviously, viruses act as predators, causing the mortality of marine microbes. Viruses also help to maintain the high levels of microbial genetic diversity observed in marine ecosystems because hosts are known to manipulate their genomes to evade diseases. By moving DNA between the host cells, viruses act as agents of sex, shuffling genetic information around the community and providing new and surprising combinations of genes in their hosts. Viruses can also play a role in the ecology of host cells by lysogenic conversion, a phenomenon in which a phage changes the phenotype of a host cell by either introducing genetic material into the hosts genome or by other means. Ithas been found, for example, that marine viruses can carry the genes necessary for photosynthesis, and that these genes are regularly transferred between host cells ofProchlorococcus. This temporary storage in viruses and the efficient shuffling of the genes among Prochlorococcus species probably has had a profound impact on the evolution of these photosynthesis genes and on the ecology of Prochlorococcus. The oceans are host to many different kinds of extreme environments, and marine microbes have found numerous ways to thrive in those places by either changingtheir biochemistry to cope with the conditions or by creating barriers to keep the harsh conditions out of their cells. In cold environments, psychrophilic bacteria cope with the conditions by maintaining flexible membranes and by circulatingnatural antifreeze compounds throughout the cell. In extremely hot areas of the oceans, hyperthermophilic microbes use subtle changes in their proteins to maximize the number of stabilizing salt bridges and ion pairings that keep enzymestogether in the heat. Reverse gyrase, which allows DNA to maintain its structure during replication at high temperatures, is another unique enzyme used by hyperthermophiles. In areas of high salt concentrations, many halophiles haveadapted by altering their proteins, making them acidic, and hence, resistant to the protein-scattering effects of high salt concentrations. Other halophiles circulate osmolytes, small organic molecules that prevent water loss to the highly saltysurroundings outside the cell. Due to rapid growth rates and metabolic flexibility, microbes could possibly serve as a buffer that helps dampen large scale changes resulting from human-induced modifications on the biosphere. There is a great deal of uncertainty about how well this dampening effect works in practice, however. It may be that microbes have a certain buffering capacity.

The cleanup of hydrocarbons, specifically petroleum products, is an especially pressing matter in the oceans, where accidents aboard oil tankers can release thousands of gallons of oil in a single incident. In some cases, fertilizing the indigenous microbial communities on the affected beaches with nitrogen and phosphorus can speed the degradation of the spilled oil, but bioremediation options in open water are limited because of difficulties in delivering sufficient nutrients to sustain biodegradation. It is now known that the actions of an entire microbial community are necessary to break down complex organic matter, including petroleum. For example a cluster of genes that carry out the degradation of chlorinated biphenyls, called the BPH cluster, have been isolated and are now being applied in treating dredged contaminants from the Hudson River estuary. There is a possibility that marine viruses can be used to control harmful algal blooms in a sort of viral therapy. Viruses may be isolated from the algal species responsible for blooms, then engineered or otherwise enhanced in the laboratory, and released in a bloom. This approach holds great potential for controlling diseases in aquaculture settings. http://academy.asm.org

REFFERENCES http://wikipedia.org/wiki/Biosphere en.wikipedia.org/wiki/Ecology http://onlinelibrary.wiley.com/doi/10.1038/npg.els.0001746/abstract http://www.pnas.org/content/96/7/4023.full http://www.bashanfoundation.org/hartmann/hartmannecology.pdf http://academy.asm.org/images/stories/documents/marinemicrobialdiversity.pdf

MAKERERE UNIVERSITY FACULTY OF VETERINARY MEDICINE

COURSE: MOLECULAR BIOLOGY AND BIOTECHNOLOGY COURSE UNIT: MOLECULAR EPIDEMIOLOGY COURSE CODE: MBS 7213 LECTURER: DR. SAMEUL MAJALIJA

NAME: NASSIMBWA FLORENCE REGISTRATION NUMBER: 2010/HD17/317U

COURSE WORK: Microbes are believed to be the first forms of life on the planet earth. Describe the role of microbial life in evolution and ecology of the biosphere.

July 2011