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Abstract: The indiscriminate use of agricultural pesticides has created serious health and environmental problems in many developing
countries including Bangladesh. On the other hand, Bacillus thuringiensis kurstaki (Btk) has long been used commercially as pest control
agents particularly against lepidopteran vegetable pests. In this study, new potential Btk-like isolates were collected from different sources
(viz. soil, leaves, insects, stored product dust etc.) and regions of Bangladesh. Acetate selection-heat treatment-lecithinase production and
haemolytic activity were initially performed to narrow down the spectrum for selection of Btk-likeisolates. Specific biochemical tests (Es+, Sa+,
Le+, Su-) were performed to differentiate Btk from other subspecies. Based on these tests, of 148 Bt isolates, 27.7% (41 Bt isolates) were
confirmed as Bt kurstaki isolates. The 41 isolates were investigated for the presence of cry1, cry1A and cry2A genes by PCR identification
with gene specific primers and demonstrated some level of diversity with respect to major genes content in the strains. Nine of the isolates
were found to carry all three genes while another nine contained both cry1 and cry2A genes. 29, 22 and 16 of the isolates contained singly
cry1, cry2A or cry1A gene respectively. Plasmid DNA was purified which ranged from 12-15 kb in most of the isolates which were very similar
to the plasmid pattern of Btk HD-73. Bioassay was performed with the isolates harbouring Lepidoptera specific cry1A genes against
vegetable pest Bactrocera cucurbitae. Five of the isolates having higher activity close to Btk HD-73 were considered for determination of LC 50
and LC90. The results will be a useful basis for developing effective bio-pesticides to decrease the use of hazardous chemicals in Bangladesh
agriculture.
Key words: Molecular characterization, Bacillus thuringiensis kurstaki (Btk), pesticidal activity, vegetable pest, Bangladesh.
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like specific toxicity against target insects, lack of polluting where no Bt preparations have been applied before. Samples
residues and safety to non-target organisms such as were taken aseptically from 2-5cm below the surface of
mammals, birds, amphibians and reptiles. It has been used in shadowed and slightly moistened places which are generally
agriculture, forestry and mosquito control and accounts for not exposed to sunlight. Samples (about 10.0g for soil) were
95% of the 1% market share of biopesticides in the total put into the sterile plastic bags and carried to the laboratory
pesticide market [7]. and kept in dry places at room temperature. The samples
Bacillus thuringiensis (Bt) is a gram-positive bacterium that is were then processed to isolate Bacillus thuringiensis kurstaki
characterized by the production of insecticidal crystal proteins and the isolation of Btk was accomplished in combination of
or δ-endotoxins which can kill insects belonging to the acetate selection and heat treatment [17] with an extra step of
Lepidoptera, Coleoptera, Diptera, Hymenoptera, Homoptera, screening for lecithin hydrolysis capability to exclude other Bt
and Mallophaga, as well as some invertebrates [1, 6, 16]. isolates lacking this property. Thus, 1.0g of each sample (for
These Cry toxins are encoded by cry genes and more than six leaf, 1 in each flask and for insect, gut was dissected and put
hundreds of cry genes have been enlisted in the full list of into the medium by mashing) was added into 20ml of L-broth,
delta- buffered with 0.25M Na-acetate (pH 6.8) in a 125ml
endotoxins.(http://www.lifesci.sussex.ac.uk/Home/Neil_Crickm Erlenmeyer flask and incubated in an orbital shaker for 4 hour
ore/Bt/) at 200rpm at 30oC. 0.5ml of sample was transferred into sterile
Information about the distribution of cry genes is still limited test tubes and heat- treated for 10 minutes at 80oC in a water
and does not cover many distinct geographic areas. So, it is bath. Heat treated suspension was then plated on Egg yolk
very essential to search for novel and more potent strains with agar medium (per litre: 10g of tryptone, 5g of yeast extract, 5g
new pathogenic spectrum and wider host ranges, in parts of of NaCl, and 15g of agar, 100ml of egg yolk suspension) and
the world that have not yet been adequately sampled, incubated overnight at 30oC. Colonies that produced white
especially Bangladesh. surrounding of precipitation were then picked and sub-cultured
Though research with Bt is not new, searching for more and to obtain pure culture and preserved both in slant and in
more potential Bt strains keeps tremendous importance as glycerol stock for future works.
resistance to the already used Bt products is emerging as a
common problem. As there are some reports against Phase contrast microscopy:
transgenic Bt-crops for immunologic adverse effect, Bt Isolates with lecithin hydrolysis capability were inoculated in T3-
biopesticide is more safe as spray-on formulation in the field. agar medium (1.0 L: Tryptone 3.0g, tryptose 2.0g, yeast extract
But still no such Bt products are available in Bangladesh and it 1.5g, MnCl2 0.005g, phosphate buffer 50mM, agar 15.0g; pH:
is also lacking in any kind of national work with Bt. Large scale 6.8) and incubated at 30oC for 40-72 hours to allow sporulation.
production of Bt using cheap substrate by fermentation is also Isolates with juxtaposed glowing spore and dark crystal protein
challenging and taking them to the field is a complete course observed under Phase Contrast Microscope were considered
for Bt biopesticide. as Bacillus thuringiensis.
The present study therefore deals with isolation, identification
and molecular characterization of the indigenous Bt kurstaki Hemolytic test:
like isolates with a view to selecting the potential candidates for
The production of extracellular hemolysins, an indication of
biopesticide production and formulation. At the same time, insecticidal activity of Bt isolates [10], was tested on blood agar
discovering melon fly (Bactrocera cucurbitae) controlling Bt (nutrient agar containing 5% (v/v) sheep erythrocytes). Bt
strains is also an important objective of this work. isolates were inoculated as a point onto blood agar plates by
Method and Materials: needle and the formation of clear zone of hemolysis
surrounding Bt colonies was examined after incubation at 27°C
Bacterial strains: for 24 h [8]. The positive isolates thus were selected for further
Bacillus thuringiensis kurstaki HD-73, B. thuringiensis sotto, B. studies.
thuringiensis japonensis Buibui were used as reference strains
and were obtained from Bt stock collection of Okayama Biochemical typing:
University, Japan. All of the isolates of Bt were preserved in Four most relevant biochemical tests i.e. esculin utilization,
10% glycerol stock at -70oC freeze. acid formation from salicin and sucrose, and lecithinase
production were carried out to identify Bacillus thuringiensis
Sampling and Isolation of Btk: kurstaki subspecies with their characteristic test result (Es+,
Soil, leaf, insect cadavers and stored product dust samples Sa+, Le+, Su-) [11].
from different regions (Table.1) of Bangladesh were collected
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Plasmid profiling: (Promega, USA) gel prepared and submerged in 1×TBE buffer
Plasmid DNA was prepared by using the method described by at 60V for 50min. Gel was visualized in gel documentation
Crosa and Falkow [3]. Briefly, The pellet of a 5.0ml culture system (Alphaimager mini, USA) following staining in 1×TBE
grown in LB broth was lysed with 0.85 ml of TE buffer (50 mM buffer-EtBr (Sigma, USA) solution and de-staining in distilled
Tris, 20 mM EDTA; pH 8.5) containing 2 mg/ml of lysozyme water.
(Wako, Japan), 0.05 ml of 20% SDS solution, and 5U
proteinase-K (Nacalai tesque, inc, Japan). After mixing by Bioassay:
gentle inversions, the cell suspension was incubated at 37°C The toxicity of the Btk isolates positive for cry1 and cry1A
for 30 min. 0.03 ml of 3.0N NaOH was added subsequently to genes were determined against the 3rd instar larvae of
the suspension and mixed gently for 3 min. The suspension Bactrocera cucurbitae. Spore-crystal mixture for bioassay was
was neutralized by addition of 0.06 ml of 2 M Tris-HCl (pH 7.0) prepared from the twenty nine cry1 gene positive isolates and
and mixed gently. 0.1ml of 5 M NaCl was then added, and the reference strain Btk HD-73 by inoculating them in 100ml of T3-
suspension was mixed by inversions, placed on ice for 15 min, liquid medium and incubating for 7 days at 30°C with
and then centrifuged at 12,000 x g for 15 min at 4oC (Tomy, continuous shaking at 250 rpm. Cultures were centrifuged at
MX-305, high speed Refrigerated micro centrifuge, Japan). The 5000 rpm for 15 min to separate the culture from medium.
supernatant was transferred into a fresh centrifuge tube, and 2 Pellets (spores and crystal protein mixture) were washed twice
volume of ice-cold ethanol was added. The tube was kept at - with 20mL of cold sterile distilled water and centrifuged at 5000
20°C for 15 min and then centrifuged at 12,000 x g for 15 min. rpm for 5 min. The pellets were re-suspended in 20mL of
The supernatant was discarded, and the residue was dried by sterile distilled water and stored at 4°C. Larval diet was
inverting the tube over a paper towel for a few minutes. The prepared by mixing spore-crystal suspension of each isolate
residue was dissolved in 50μl of TE (10mM Tris, 1mM EDTA) with 10g of semisolid paste of boiled pumpkin. 10 larvae were
buffer and kept at -20°C. Plasmid DNA was analyzed by placed in each petri-dish provided with spore-crystal
electrophoresis on horizontal 0.8% agarose (Promega, USA) suspension mixed diet. The toxicity of each strain was assayed
gels submerged in 1×TBE buffer at 70V for 3 hours. Gel was in triplicate. The petri dishes were incubated at 25±2°C
visualized in gel documentation system (Alpha imager mini) temperature and 70±10% RH, with a photoperiod of 16:8 (L: D)
following staining in EtBr solution and de-staining in distilled for 7 days. Mortality was scored in comparison with a parallel
water. control in which diet was mixed with sterile distilled water
instead of bacterial suspension and it was used to correct test
Detection of cry1, cry1A and cry2A genes in Btk like mortality using Abbot’s formula [4].
isolates:
To identify the potential most Btk like isolates against Results:
vegetable pests, cry1 and cry1A genes were searched by
Polymerase Chain Reaction (PCR) with Universal cry1 primer Identification of Bacillus thuringiensis Isolates:
set, forward (5’-CATGATTCATGCGGCAGATAAAC-3’) and Samples were collected from peripheral and central locations
reverse (5’-TTGTGACACTTCTGCTTCCCATT-3’); lepidoptera of Dhaka and different agricultural areas of Bangladesh. Total
specific cry1A primer set, forward (5’- 139 samples were processed comprising of 97 soil, 31 leaf, 7
CCGGTGCTGGATTTGTGTTA-3’) and reverse (5’- insect and 4 stored product dust. After acetate selection and
AATCCCGTATTGTACCAGCG-3’); cry2A specific primer sets, heat treatment, 186 Bt like isolates were obtained in the EYA
forward (5’-TAAAGAAAGTGGGGAGTCTT-3’) and reverse (5’- medium from 114 samples (82%) out of 139 samples
AACTCCATCGTTATTTGTAG-3’). DNA template was mixed however 25 samples did not produce growth of any isolate
with PCR reaction mixture i.e. per μl containing 0.2mM dNTPs, (Table 1) . 155 lecithin hydrolysing isolates (83.3%) were
0.5µM of each primer, 1x PCR buffer and 0.5 u of Taq DNA picked (Fig 1A) from these 186 Bt-like isolates and after
polymerase (Promega, USA) in 25μl reaction volume and sporulation in T3- agar medium 148 isolates were observed to
amplification was performed in a DNA thermal cycler (MJ, Bio- possess parasporal body containing Cry proteins as revealed
Rad). For both cry1 and cry1A primer sets, PCR was carried under phase contrast microscope (Fig 1B) and light
out with an initial single denaturation step at 95oC for 2min and microscope also following CBB staining. The haemolysis test
30 amplification cycles including denaturation at 95oC for 45s, revealed that out of 148 isolates, 115 (77.7%) was found to be
annealing at 51oC for 45s and extension at 72oC for 60s. For haemolytic (Fig 1C) hence considered to have insecticidal
cry2A, annealing at 45oC for 45s was carried out. Finally an activity.
extra extension step was applied at 72oC for 10 min. 5μl of the
PCR products were then electrophoresed in 1.5% agarose
AFSSA 145
A B C
Bt
others
kurstaki
22%
27.7%
Bt
Bt dendroli
Bt
thuringie mus
israelens
nsis Bt sotto 12%
is
18% 10.3%
10%
Fig 1: A) Lecithin hydrolysis- white precipitation surrounding the colonies. B) Glowing
spores and dark crystal protein of Bt isolates under Phase contrast microscope, C)
Differentiation between hemolytic and non-hemolytic Bt isolates. n=148
Table 1: Btk index in different sampling locations. Fig 2: A) Distribution of different biotypes of Bacillus thuringiensis
isolates in the samples collected.
Fig 3: Plasmid pattern of Btk like isolates indicated over the lanes. Btk HD-73
is the reference strain. (M: Supercoiled DNA ladder, Invitrogen)
Biotyping:
A simple biotyping method which included lecithin hydrolysis Characterization of cry gene content:
(done in the isolation stage), esculin utilization, sucrose and
Forty one Btk like isolates were checked for the presence of
salicin fermentation tests revealed the abundance of differentcry1, cry1A and cry2A genes. Initially 29 isolates were
biotypes of Bt in the working samples and Btk like isolates considered positive for cry1 gene as PCR product of about 270
were obtained in this process. Bacillus thuringiensis kurstakibp was evident for them which is the desired product size for
(27.7%) was the most abundant biotype among other types universal cry1 primer sets. These twenty nine cry1 gene
(Fig 2A). Bt thuringiensis, Bt type ten and Bt dendrolimus were
positive isolates were then examined for the presence of
the next abundant isolates. Btk was most abundant (index- Lepidoptera specific cry1A gene and of them sixteen isolates
0.69) in the soil of Jhenaidah (Table 1). were found positive with expected 490 bp PCR product (Fig
4A). Twenty two isolates out of forty one were observed with
Plasmid profile: bands of different product size for cry2A specific primers
Bacillus thuringiensis commonly harbours a varied number of among which desired product of more than 1500 bp was not
large plasmids with different molecular mass. As most of the observed. So, though the isolates responded in the PCR, they
cry genes are located on these large plasmids [3]. Plasmids were not considered to harbour cry2A genes.
from Bt kurstaki like isolates were extracted and plasmid
pattern of these isolates were compared with reference Btk Bioassay:
HD-73. Plasmids ranging from 10-15 kb were observed for the The toxicity of spore-crystal mixture of twenty nine cry1 gene
Bt isolates and a 12kb plasmid band was evident for Btk HD-73 positive Btk like isolates was assayed against 3rd instar larvae
(Fig 3). of Bactrocera cucurbitae. A single dose (6x107spores ml-1)
assay in triplicate was employed to screen for potential most
Btk like isolates. The assay was repeated with ten potential
most isolates and the highest mortality scoring four isolates i.e.
JSc1 (96%), SSc2 (80%) and SSe2 (63%) and JaS8 (56%)
were recorded along with reference Btk HD-73 (100%
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mortality) (Fig 5). Their performance was also analysed Su-) of which lecithin hydrolysis test was accomplished in the
statistically calculating standard deviation. isolation stage. Bacillus thuringiensis kurstaki biotyped isolates
were most abundant (27.7%) among other sup-species of Bt in
35 the sampling sites.
Number of isolates
30
25
20
15
10
5
0
A cry1 cry1A cry2A
Fig 4: A) cry1 (about 270bp product in the left direction of marker) and cry1A
(about 490bp product in the right direction of marker) gene screening by PCR A Larvae died
analysis. Isolates
B name as per labelled over the lane (100bp DNA ladder;
TaKaRa, Japan). B) Number of cry1 and cry1A genes in the Btk biotyped 120
isolates.
100
Discussion: 80
60
Average
The particular interest of this research work was to isolate and 40 Mortality
identify Bacillus thuringiensis kurstaki like isolates as this Percentage
20
subspecies of Bt has a long successful history to control the
vegetable pests belonging to Lepidoptera order. So after heat 0
B
treatment of the samples following acetate selection, they were -20
Control HD-73 JSc2 JSc1 JSa1 SSc2 SSe2 JaS8
AFSSA 147
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against the 3rd instar larvae of Bactrocera cucurbitae (Melon insects and beyond. Biotechnology, 10: 271–275
fly), a detrimental pest of cucurbitaceae or vine crop family.
7. Flexner, J. L., Belnavis, D. L. 1999. Microbial insecticides. In:
The result of the bioassay revealed that indigenous Btk JSc1, Biological and Biotechnological Control of Insect Pests, eds. Rechcigl
Btk SSc2 and Btk SSe2 are highly toxic against the melon fly J.E. & Rechcigl N.A. pp. 35–62. Boca Raton: Lewis Publishers. ISBN 1-
(Bactrocera cucurbitae) larvae. The bioassay was repeated for 56670-4790.
thrice and each time it was done in triplicate to justify the
results statistically. 8. Frankenhuyzen, K. V. 1993. The challenge of Bacillus thuringiensis.
There were some efforts in controlling the melon fruit fly In: Entwistle, P. F., Cory, J. S., Bailey, M. J., Higgs, S. R., (eds) Bacillus
thuringiensis, an environmental biopesticide: theory and practice. Wiley,
(Bactrocera cucurbitae) chemically but those were not so Chichester, pp 1-35.
efficient and the most conventional method to control them is
radiation technique by which sterile fly are introduced in the 9. Ichikawa, M., Uemori, A., Yasutak, K., Kagoshima, K., Mizuki, E.,
nature. But easy and ready to use control measures are more Ohba, M. 2008. Failure to phenotypically discriminate between non-
preferable like formulation of biopesticide and its direct insecticidal Bacillus thuringiensis strains with anticancer parasporins
application in the field. So the results obtained from the (PS2, PS3, and PS4) and Bacillus thuringiensis strains that produce
insecticidal Cry proteins. Appl. Entomol. Zool. 43: 421-426.
bioassay are very promising and will be very useful to develop
efficient Bt biopesticides to control melon fly affects in 10. Kitada, S. et al., 2005. Molecular Identification and Cytocidal Action
vegetables. This will thus help to reduce hazards in food chain of Parasporin, a Protein Group of Novel Crystal Toxins targeting human
and thereby enhance the food safety which will consequently cancer cells. 6th Pacific Rim Conference on the Biotechnology of Bacillus
decrease the health risk. thuringiensis and its Environmental Impact, Victoria BC.
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