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From the list below, I want you to tell how translation initiation occurs in
PROKARYOTES. You will finish with the formation of a dipeptide.
You should use as many of the choices as possible. But you should NOT use all of
them.
If you can draw the process then you should be able to put this list in the correct order.
1.
A charged fmet-tRNA binds the start codon.
2.
A charged met-tRNA binds the start codon.
3.
A charged tRNA that decodes the second codon enters the A site of the ribosome.
4.
A charged tRNA that decodes the second codon enters the E site of the ribosome.
5.
An uncharged tRNA enters the A site and is charged by peptidyl transferase.
6.
First, transcription of the mRNA must finish before translation can begin.
7.
Peptidyl transferase catalyzes the formation of a peptide bond between the amino
acid in the P site and the A site of the ribosome.
8.
Peptidyl transferase charges the tRNA in P site. This makes it chemically reactive
and a peptide bond quickly forms between the amino acid in the P site and the A
site of the ribosome.
9.
Second, the mRNA must be transported from the nucleus to the cytoplasm
10. The large subunit assembles in such a way that the initiator tRNA is in the
completed P site.
11. The ribosome translocates three nucleotides down the mRNA.
12. The small riboosomal subunit scans the mRNA from the 5' methylated Cap until it
locates the start codon. The start codon is almost always the first AUG in the
mRNA.
13. The small ribosomal subunit positions itself correctly by interacting with (binding)
the Shine-Delgarno sequence within the mRNA.
14. The uncharged tRNA is now in the E site, the tRNA carrying a dipeptide is in the P
site and the A site is empty awaiting another charged tRNA.
15. This places the start codon in the P site of the small subunit.
A)
B)
C)
D)
E)
14, 11
11, 14 *
11, 14
14, 11
5, 8, 11, 14
**ANSWER EXPLANATION**
The correct order is:
13, 15, 1, 10, 3, 7, 11, 14
13. The small ribosomal subunit positions itself correctly by interacting with (binding)
the Shine-Delgarno sequence within the mRNA. *1*
15. This places the start codon in the P site of the small subunit. *2*
1.
A charged fmet-tRNA binds the start codon. *3*
10. The large subunit assembles in such a way that the initiator tRNA is in the
completed P site. *4*
3.
A charged tRNA that decodes the second codon enters the A site of the ribosome.
*5*
7.
Peptidyl transferase catalyzes the formation of a peptide bond between the amino
acid in the P site and the A site of the ribosome. *6*
11. The ribosome translocates three nucleotides down the mRNA. *7*
14. The uncharged tRNA is now in the E site, the tRNA carrying a dipeptide is in the P
site and the A site is empty awaiting another charged tRNA. *8*
These should NOT be used for either prokaryotic or eukaryotic translation.
4.
A charged tRNA that decodes the second codon enters the E site of the ribosome.
5.
An uncharged tRNA enters the A site.
8.
Peptidyl transferase charges the tRNA in P site. This makes it chemically reactive
and a peptide bond quickly forms between the amino acid in the P site and the A
site of the ribosome.
These entries are eukaryotic specific.
2.
A charged met-tRNA binds the start codon.
6.
First, transcription of the mRNA must finishes before translation can begin.
9.
Second, the mRNA must be transported from the nucleus to the cytoplasm
12. The small riboosomal subunit scans the mRNA from the 5' methylated Cap until it
locates the start codon. The start codon is almost always the first AUG in the
mRNA.
2.
From the list below, I want you to tell how translation initiation occurs in
EUKARYOTES. You will finish with the formation of a dipeptide.
You should use as many of the choices as possible. But you should NOT use all of
them.
If you can draw the process then you should be able to put this list in the correct order.
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
A)
B)
C)
D)
E)
14, 11
11, 14
14, 11
7, 11, 14
3, 7, 11, 14
**ANSWER EXPLANATION**
The correct order is:
6, 9, 12, 15, 2, 10, 3, 7, 11, 14
6.
First, transcription of the mRNA must finishes before translation can begin.
9.
Second, the mRNA must be transported from the nucleus to the cytoplasm.
12. The small riboosomal subunit scans the mRNA from the 5' methylated Cap until it
locates the start codon. The start codon is almost always the first AUG in the
mRNA.
15. This places the start codon in the P site of the small subunit.
2.
A charged met-tRNA binds the start codon.
10. The large subunit assembles in such a way that the initiator tRNA is in the
completed P site.
3.
A charged tRNA that decodes the second codon enters the A site of the ribosome.
7.
Peptidyl transferase catalyzes the formation of a peptide bond between the amino
acid in the P site and the A site of the ribosome.
11. The ribosome translocates three nucleotides down the mRNA.
14. The uncharged tRNA is now in the E site, the tRNA carrying a dipeptide is in the P
site and the A site is empty awaiting another charged tRNA.
These should NOT be used for either prokaryotic or eukaryotic translation.
4.
A charged tRNA that decodes the second codon enters the E site of the ribosome.
5.
An uncharged tRNA enters the A site.
8.
Peptidyl transferase charges the tRNA in P site. This makes it chemically reactive
and a peptide bond quickly forms between the amino acid in the P site and the A
site of the ribosome.
These should not be used because they are prokaryotic specific events.
13. The small ribosomal subunit positions itself correctly by interacting with (binding)
the Shine-Delgarno sequence within the mRNA.
1.
A charged fmet-tRNA binds the start codon.
3.
4.
B)
C)
5.
the tRNA has an amino acid covalently attached to its 3' end. *
the tRNA has an amino acid covalently attached to its 5' end.
What are the minimum number of anticodons necessary to decode the six
different codons for leucine?
A) 1
B) 3*
C) 6
Explanation
321
3' AAU 5' anticodon
5' UUA 3' codon
123
321
3' AAU 5' anticodon
5' UUG 3' codon
123
321
3' GAI 5' anticodon
5' CUU 3' codon
wobble base-pairing
3' GAI 5' anticodon
5' CUC 3' codon
wobble base-pairing
wobble base-pairing
U can bp with A or G
7.
Amino acids are covalently added to the _________ end of a tRNA. Once
added, the tRNA is said to be _________.
A)
B)
C)
D)
E)
8.
3' , activated
3' , charged*
3' , formylated
5' , activated
5' , charged
The 3' end of mRNA encodes the _________ terminus of the encoded
protein.
A)
B)
9.
eukaryotes
prokaryotes*
amino
carboxy*
11.
A)
B)
C)
D)
E)
cause RNA polymerase to be unable to determine the correct transcription start site.
prevent the mRNA from being transported out of the nucleus.
stop the ribosome from recognizing the AUG translation start codon.*
interfere with mRNA polyadenylation
A and C
nucleus, cytoplasm *
cytoplasm, nucleus
nucleus, nucleus
cytoplasm, cytoplasm
D)
C)
D)
E)
3
61
64 *
frameshift mutation.
missense mutation.
silent mutation. *
nonsense mutation.
There are the same number of codons as there are amino acids. *
The code is used by nearly every living organism.
Some amino acids have multiple codons.
The code is degenerate.
A)
B)
C)
D)
DNA
mRNA
rRNA
tRNA *
FIGURE QUESTION
Legend
= ribosome
= these are proteins
Obviously you will not answer these questions on the homework. Use them to
help yourself prepare for the exam.
35. Short answer, Essay 2. What is wobble-base pairing? Please describe
exactly how it works and what it allows the cell to accomplish.
Answer it on your own. I will hand out an answer with the key.
This one is not graded.
Answer: Wobble base-pairing is a non-standard type of base pairing that occurs
between the THIRD nucleotide in a codon and the FIRST nucleotide in an anticodon. It
enables a single tRNA to recognize more than one codon for a particular amino acid.
Wobble base pairing allows the cell to decode 61 codons with fewer than 61 tRNAs.
That is; some tRNAs decode multiple synonymous codons.
36. Describe how the "wobble" theory applies to protein synthesis.
Answer it on your own. I will hand out an answer with the key.
This one is not graded.
Answer:
In the genetic code, all but two amino acids have multiple codons that code for their
placement into proteins through translation. Though there are 61 possible coding
codons, organisms will not have 61 tRNA molecules. Some tRNA molecules will
effectively bind to codons even though their anticodon is not a perfect match. This
"wobble effect" usually happens at the 3' position of a codon. An example is the
insertion of phenylalanine into a polypeptide. Both codons UUU and UUC code for
phenylalanine. If a single tRNA is able to bind to the codon UUPyrimidine, only one
tRNA would be needed to bind for inserting phenylalanine into a growing polypeptide.
--------------------------------------------------------------------------------------------------------------------37. This figure shows an mRNA being translated. Please label the following items
on the figure. An understanding of how genes are organized will enable you to
sensibly arrange the labels.
Gene 1,
Gene 2,
5' end of the mRNA,
nonsense codon(s),
Methionine-encoding start codon(s),
Shine-Dalgarno sequence
Answer it on your own. I will hand out an answer with the key.
This one is not graded.
Answer:
Gene 1
Gene 2
Methionine-encoding!
start codon(s)
Shine-Dalgarno sequence
nonsense codon(s)!
located about here
nonsense codon(s)!
located about here
Methionine-encoding start
codon(s)
Shine-Dalgarno sequence
M
ATG
T
ACT
ACC
ACA
ACG
N
AAT
AAC
C
TGT
TGC
W
TGG
P
CCT
CCC
CCA
CCG
H
CAT
CAC
Q
CAA
CAG
R
CGT
CGC
CGA
CGG
AGA
AGG
K
AAA
AAG
V
GTT
GTC
GTA
GTG
A
GCT
GCC
GCA
GCG
D
GAT
GAC
E
GAA
GAG
G
GGT
GGC
GGA
GGG