Академический Документы
Профессиональный Документы
Культура Документы
Epidemiology
The genus Klebsiella is a member of the Enterobacteriaceae family. Klebsiella species
are ubiquitous in nature and can be found in the natural environment (e.g., water and
soil) and on mucosal surfaces of mammals (16). Common sites of colonization in
healthy humans are the gastrointestinal tract, eyes, respiratory tract, and genitourinary
tract (16).
Klebsiella pneumoniae has emerged as an important cause of hospital-acquired
infections, especially among patients in the neonatal intensive-care unit (NICU) and
mortality rates can be as high as 70% (17). Over the last two decades, the incidence of
infections caused by multidrug-resistant Klebsiella strains has increased.
Extended spectrum -lactamase enzymes were first described in Klebsiella
pneumoniae and Serratia marcescens isolates in 1983 in Europe and in Klebsiella
pneumoniae and Escherichia coli isolates in 1989 in the United States (18). Since
then, there has been a marked increase in the incidence of bacteria that produce ESBL
enzymes. In the United States, the proportion of Klebsiella pneumoniae strains
resistant to Ceftazidime increased from 1.5% in 1987 to 3.6% in 1991, and by 1993 as
many as 20% of strains were resistant to Ceftazidime in some teaching hospitals
(19,20 ). Of 824 Klebsiella pneumoniae strains isolated from 15 hospitals in New
York City during 1999, 34% expressed ESBL enzymes (21).
1.1.2
mannose sequences are recognized by the surface lectin of macrophages and the
organism is more efficiently ingested and killed by opsonin-independent
phagocytosis. (22)
In addition to the capsule, there are about five somatic or O antigens, fimbrial and
nonfimbrial adhesins, which serve as virulence factors. The fimbriae or pili are
nonflagellar, filamentous projections on the bacterial surface that mediate attachment
of the organism to respiratory, gastrointestinal, and urinary tract mucosal cells. Most
clinical K. pneumoniae isolates are able to produce the two fimbrial adhesins, type 1
fimbriae and type 3 fimbriae. Type 1 fimbriae mediate adhesion to mannosecontaining structures on host cells and extracellular matrix and are present in many
species of Enterobacteriaceae.
Additional virulence determinants for Klebsiella species include the ability of the
organism to scavenge iron from the surrounding medium using secreted siderophores,
that is, enterochelin and aerobactin. These are high-affinity, low molecular weight iron
chelators that competitively take up iron bound to host proteins (23).
1.1.3
Thus, Gram negative bacilli containing these plasmids are multidrug-resistant (25).
Furthermore, these plasmids are mobile genetic elements and can be transmitted
between Gram negative bacilli of different species in vivo (26).
During a 30-month outbreak of ESBL-producing K. oxytoca in an NICU, the plasmid
from K. oxytoca spread to K. pneumoniae, E. coli, Enterobacter cloacae, and
Citrobacter freundii (27).
Over 100 different ESBL enzymes have been identified, each with a preferential
substrate. Thus, an ESBL-producing isolate may be resistant to Ceftazidime, but
susceptible to Cefotaxime. As a result, ESBL-producing isolates may not be detected
if susceptibility testing is limited to a single third-generation cephalosporin. The
National Committee for Clinical Laboratory Standards (NCCLS) recommends routine
screening for ESBL activity in E. coli, K. pneumoniae, and K. oxytoca isolates by
determining susceptibility to several Cephalosporins including Cefpodoxime,
Cefotaxime, Ceftriaxone, and Ceftazidime (28,29 ).
If an isolate is resistant to any one of these agents, that is, minimum inhibitory
concentration (MIC) 2 g/ml, confirmatory tests for an ESBL enzyme are
performed by demonstrating increased susceptibility to Cefotaxime or Ceftazidime in
the presence of Clavulanic acid, as Clavulanic acid inhibits ESBL enzymes and
lowers the MIC of the Cephalosporins. However bacteria with ESBL-containing
plasmids remain susceptible to the Carbapenems, that is, Meropenem and Imipenem,
and Cephamycins such as Cefoxitin and Cefotetan.
1.1.4
1.1.5
Clinical presentations
The importance of Gram negative bacilli as major causes of hospital-acquired
infections in NICU patients has been well documented. K. pneumoniae can cause
early-onset and, more commonly, late-onset sepsis, conjunctivitis, hospital-acquired
pneumonia, urinary tract infections (UTIs), and surgical site infections (16, 38).
Approximately 4% of episodes of late-onset sepsis in very low birth infants and 6% of
overall infections in the neonatal ICU population are caused by K. Pneumoniae (39,
40). According to the most recent National Nosocomial Infection Surveillance System
data, K. pneumoniae has been noted to cause 2.9% of bloodstream infections, 2.9% of
eye, ear, nose and throat infections, 9.8% of GI tract infections, 5.7% of pneumonia,
and 6.3% of surgical site infections in the NICU (41). As demonstrated by the
CDC/National Association of Children's Hospitals and Related Institutions
(NACHRI) point-prevalence survey conducted in 1999, K. pneumoniae caused 1.7%
of bloodstream infections, 20% of respiratory tract infections, 8.3% of UTIs, and
5.6% of other infections in patients in NICUs (40).
The present study is designed to determine the prevalence of Klebsiella species in
clinical specimens at Parirenyatwa hospital and to determine the antimicrobial
susceptibility patterns of the isolates.
1.2
persistent problem in many parts of the world, especially in intensive care units (6, 7,
8, 9-12). Klebsiella species are successful opportunistic pathogens thus their
prevalence and antimicrobial susceptibility patterns need constant evaluation so as to
reduce further health risks, recurrence and continual spread of infection within
hospital settings.
1.3
Hypothesis
Null Hypothesis (Ho)
The prevalence of Klebsiella species in clinical specimens at Parirenyatwa is 10%
Alternative Hypothesis (Ha)
The prevalence of Klebsiella species in clinical specimens at Parirenyatwa is greater
than 10%
1.3
Specific objectives
2.1
Materials
Latex examination gloves
Bunsen burner
Light microscope
Lens tissue
Diamond marker
Immersion oil
76 26mm glass slides
Slide rack
Crystal violet
Lugols iodine
Acetone
Carbol fuschin
Incubator
Gram negative antibiotic discs: Tetracycline (25g), Kanamycin (30g),
Chloramphenicol (25 g), Ampicillin (25 g), Streptomycin (10g), Cotrimoxazole
(25g), Amikacin (10g), Gentamicin (30g) and Ceftazidime (30g).
Distilled water
Sulphuric acid
Barium chloride
Inoculating wire loop
MacConkey agar
Muller Hinton agar
Lysine iron agar
M.RVP (Methyl red Voges- Proskauer) broth
Simmons citrate agar
Kovacs reagent
Peptone water
Petri dishes
Mighty marker
Bijou bottles
Long test tubes
Khan tubes
Cotton wool
Meter rule
Tongs
Physiological saline
2.2
2.2.1
Methods
Study site
The study was conducted at Parirenyatwa Central Hospital which is one of the
countrys largest referral hospitals where patients are received from local clinics,
district and provincial hospitals.
2.2.2
Study design
A cross sectional study was carried out on clinical specimens (urines and pus swabs)
of patients at Parirenyatwa Central Hospital. Isolates identified as Klebsiella species
were tested for antimicrobial susceptibility patterns
2.2.3
Study subjects
10
The study was carried out on urine and pus swab specimens sent to Parirenyatwa
Hospital Public Health Microbiology laboratory for microscopy, culture and
sensitivity. The study was performed during the periods April 2010 to June 2010.
2.2.4
Sample size
A total of 150 specimens were analysed during the study. Statistically this was
sufficient enough to determine the prevalence and antimicrobial susceptibility patterns
of Klebsiella species. (Appendix I).
2.2.5
Inclusion criteria
Inclusion into the study required specimens sent to Parirenyatwa Hospital Public
Health Microbiology laboratory accompanied by laboratory request form with patient
demographic data. Only specimens that reached the laboratory within twenty four
hours of their collection were included
2.2.6
Exclusion criteria
Specimens delivered to the laboratory after 24 hours of their collection were
excluded. Specimens which were not accompanied by patient details and clinical data
were not enrolled into the study.
2.2.7
Procedure
Permission to carry out the study was sought from the Clinical Director of
Parirenyatwa Group of Hospitals and from the Chairman of the Joint Research Ethics
Committee. After being granted, the study commenced in mid April 2010 and
concluded in mid June 2010.Samples which were included in the study were allocated
study numbers. The age, sex and clinical data for each specimen were also recorded.
11
All identifying details were removed from specimens after allocation of a study
number and results were correlated after completion of all assays.
Isolates were checked for lactose fermentation on MacConkey agar plates, typical
Klebsiella species.
Colonies were emulsified with saline on a glass slide to make a smear.
12
Smears were stained using the Gram stain technique (Appendix II) and were
observed under the light microscope at the 100x objective lens under immersion
VogesProskauer
K.p pneumoniae
-
Lactose
fermentation
+
Urease Citrate
+
Malonate
utilization
+
Lysine
decarboxylase
+
K.p aerogenes
K.p ozaenae
K.p
rhinoscleromatis
(25g),
Amikacin
(10g),
Chloramphenicol
(25g),
13
and Tetracycline (25g) were placed on the plates, spacing them well to prevent
overlapping of inhibition zones. The plates were incubated aerobically at 37C
overnight and the inhibition zone diameters were then compared with recorded
diameters of the control organism, E. coli ATCC 25922 to determine susceptibility or
resistance.
2.2.7.4 Data analysis
Data was captured using Microsoft excel and all statistical analysis performed by Epi
info. The hypothesis was tested using the standard Z test at 5% level of significance
whether it is true. The prevalence of Klebsiella species in clinical specimens was
calculated at 5% level of significance and the antimicrobial susceptibility patterns
were determined through comparison with standard patterns of control organisms.
14
NUMBER OF SAMPLES
NUMBER
ISOLATED
%
PREVALENCE
15
Urine
90
11
18.33
Swab
60
7.78
Total
150
18
12
Sensitive
Intermediate
Resistant
22.22
11.11
12
66.67
Ampicillin
18
100
Tetracycline
11.11
11.11
14
77.78
Streptomycin
16.67
15
83.3
Cotrimoxazole
11.11
16
88.89
Kanamycin
22.22
22.22
10
55.56
Amikacin
22.22
27.78
50.00
Gentamicin
22.22
11.11
12
66.67
16
Frequency
Percentage
A1
16
88.89
A2
13
72.22
A3
10
55.56
A4
12
66.67
A5
10
55.56
A6
33.33
A7
33.33
A5=
Resistance
to
and
Kanamycin.A7=
Ampicillin,
Cotrimoxazole,
Tetracycline,
to
Ampicillin,
Streptomycin,
17
Klebsiella pneumoniae strains isolated from pus swab specimens demonstrated total
resistance to Ampicillin and Cotrimoxazole, whilst only 28.57% of the isolates were
sensitive to Amikacin (Figure 2). All the isolates showed zero sensitivity to all the
antibiotics except Amikacin.
Fig 2.Antimicrobial susceptibility patterns of Klebsiella pneumoniae strains
isolated from pus swab specimens.
PERC
E
N
T
A
G
E
ANTIBIOTIC
Fig 3. Antimicrobial susceptibility patterns of Klebsiella pneumoniae strains
isolated from urine specimens.
18
PERC
E
N
T
A
G
E
ANTIBIOTIC
CHAPTER FOUR DISCUSSION AND CONCLUSION
4.0
Discussion
Klebsiella pneumoniae accounts for a substantial degree of nosocomial infections (1,
2) and the increasing tendency for nosocomial pathogens to acquire new antibiotic
resistance traits poses a problem in the control of infections. This feature reveals the
need for an updated antibiotic susceptibility pattern for the effective management of
infections caused by Klebsiella pneumoniae. The present study reports on the
antimicrobial susceptibility patterns of Klebsiella pneumoniae isolates and the
prevalence of the isolates at the study site. The findings revealed that Klebsiella
pneumoniae isolates showed marked resistance to Ampicillin, Cotrimoxazole
Tetracycline, Gentamicin and Chloramphenicol. Total resistance was exhibited on
Ampicillin (100%), (88.89%) resistance to the sulfonamide Cotrimoxazole followed
by (77.78%) resistance to Tetracycline. Gentamicin and Chloramphenicol both
exhibited (66.67%) resistance from the isolates. However a few isolates were
sensitive to Aminoglycosides and most of the isolates were resistant. The isolates
showed extremely low levels of susceptibility (22.22%) to Gentamicin,
Chloramphenicol, Amikacin and Kanamycin which was recorded as the highest
19
20
21