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1 Introduction
2 Interactions between the Boronic Acid Unit and
Nucleophiles/Lewis Bases
3 Electron-Deficient Carbonyl Groups and Their
Interactions with Hydroxyl Groups and Amino
Group
4 MetalAnion/Ligand Interactions
5 Chemosensors Based on the Michael Addition
Reaction
6 Conclusion
Acknowledgments
References
1
1
4
8
10
10
10
10
INTRODUCTION
In applying covalent bond formation in supramolecular chemistry, boronic acids stand out as one of the
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
Concepts
OH
B
OH
O
B
1
Protic
solvent
Protic
solvent
HO
+
2H2O
HO
+ 2H2O
Protic
solvent
Protic
solvent
H
Kapp
OH
B OH
OH
O
B
O
OH
Scheme 1
of the boronic acid. These issues have been comprehensively discussed in a review by Wang and coworkers, and
is not dealt with in detail here.3 Mentioned below are a few
representative examples that show the use of the boronic
aciddiol interactions.
Since the publication of the seminal papers on boronic
acid-based carbohydrate recognition by Czarnik5 and
Shinkai6 in the early 1990s, the field has undergone very
significant growth.4 Earlier efforts were mostly focused
on recognition of simple sugars such as mono- and disaccharides.1, 7 Later on, there were extensive efforts in
the development of boronic acids capable of fluorescent
property changes upon binding.4 These areas have been
covered in depth in recent reviews3, 4, 8 and are not discussed. Recent efforts have moved to the recognition of
biologically important carbohydrate biomarkers and building lectin mimics (boronolectins) using DNA, peptides,
and proteins scaffolds. Along these lines, there have been
efforts in the development of bisboronic acids for the
recognition of cell-surface carbohydrate biomarkers in cancer,8 peptide-based lectin mimics for the recognition of
the T-antigen,9 boronic acid-modified proteins,10, 11 and
boronic acid-modified DNA for various applications.12, 13
Below, selected, recent examples are described to illustrate
the utility of the boronic acid moiety for recognition of biologically important carbohydrates and in other applications.
Glycoprotein is defined as proteins that contain oligosaccharides covalently attached to polypeptide side chains. The
process is also called glycosylation. It is well known that
glycosylation plays a critical role in governing the function
and activity of many proteins.14, 15 Although the mechanism of glycosylation is well understood, the rapid detection
and differentiation of different glycosylation patterns in the
same protein is not a trivial issue. Tools commonly used
include antibodies16 and aptamers.1719 However, these
methods only focus on the detection of the intact protein
without the ability to specifically probe differences in glycosylation. To address this issue, the Wang group is working on incorporating boronic acid-modified thymidine into
DNA for aptamer selection work for glycoproteins. The
central hypothesis is that, due to the intrinsic binding affinity of boronic acids with carbohydrates, incorporation of
a boronic acid into the DNA aptamer would gravitate the
selection process toward the glycosylation site. The general aptamer selection method and idea were developed
about 20 years ago by the labs of Szostak,17 Joyce,19 and
Gold.18 Specifically, in the modified approach used in the
Wang lab, 8-quinolynylboronic acid-modified thymidine5 -triphosphate (QB-TTP, Scheme 2) was first synthesized
and effectively incorporated into DNA through polymerasemediated DNA synthesis.12 Recently, a second analog of
QB-TTP (NB-TTP, Scheme 2) was also reported by the
Wang group.13 Compared to the first-generation of boronic
acid-modified TTP (QB-TTP), NB-TTP has its own unique
properties. It changes fluorescent properties upon sugar
binding (Ka = 73 M1 with D-fructose) and the fluorescent
properties are retained after DNA incorporation (1.5-fold
change of fluorescence intensity upon addition of 100 mM
D-fructose). With such fluorescent properties, NB-TTP can
be used in applications such as fluorescent DNA aptamer
selection, DNA labeling work, as well as genomic DNA
incorporation.
Recently, there also have been efforts in making peptidebased boronic acid lectin mimics (PBLs) for glycoproteins. For example, Lavigne and coworkers selected their
PBLs for the detection of glycoproteins according to
response patterns by arrays of unidentified peptideboronic
acids libraries20 ; the Duggan group studied 4-borono-Lphenylalanine-based PBLs and their affinity for alizarin21 ;
and the Anslyn group reported a chemosensor array of PBLs
for saccharides and their derivatives. Such arrays were used
for the identification of sucralose from a beverage sample.22
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
O
N3
N
H
O
or
N3
O
HO B OH
QB
NB
HN
H
N
O
NH
O
HO
OH OH OH
O O O
P
P
P
O O O
N N
N
R=
O
QB-TTP
O
NH
O
OH OH OH
O O O
P
P
P
O
O O
HO B OH
OH
H
N
HO
OH
B
OH
N
H
O
O
O
OH
R=
NB-TTP
HN
Scheme 2
N N
N
OH
B
OH
O
B
OH
O
B
HO
O
O
H2N
N
H
HN
H
N
O
HN
O
N
H
CH3O
H
N
O
N
H
B O
Building block:
Figure 1
HO
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
Concepts
3.1
OH
HO
Figure 2
B
OH
NH2
Structure of p-boronophenylalanine 7.
ELECTRON-DEFICIENT CARBONYL
GROUPS AND THEIR INTERACTIONS
WITH HYDROXYL GROUPS AND
AMINO GROUP
The carbonyl group has always been an important functional group in molecular recognition. It readily reacts with
various nucleophiles, among which some are reversible.
Along this line, there have been efforts in the development of chemosensors based on reversible covalent
interactions between electron-deficient carbonyl groups
and different nucleophiles, such as hydroxyl groups,2527
amino groups,25, 2840 bisulfite,41 sulfide,42 hydrozine,43 and
cyanides.4447
R
O
H3 N
Bu
Bu H
O
O
N
S
S
Bn
N O
H
N
H2N
O
O
OH
S
S
H
N
N O
Bn
11
10
or
or
Scheme 4
or
or
or
O
N
H
N O
Bn
X=
or
f
NH2
Bn
N O
N
H
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
NH
OH
B(OH)2
O
N
12
HO
NH2
N
H
13
HO
O
N
O
N
B(OH)2
B O
OH
NH
14
Scheme 5
15
N NH2
R1
16 (Non-fluorescent)
Scheme 6
R2
O R2
N N
C6H13
C6H13
R1
17 (Fluorescent)
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
Concepts
R1
N
R2
N
N
CF3
20 R1 =
R3
N
R4
CF3
24 R1 = R2 =
, ETHT 4014
O
R2 = C2H5
21 R1 =
OC11H22
Polymer
R2 = C2H5
Figure 3
N
N
F3C
O
O
3.3
Diamine
O
CF3
N
N
3.2
Detection of sulfide in an aqueous solution is very useful in the food industry. The MartinezManez lab has
developed a highly selective colorimetric sensor for sulfide anion by taking advantage of the pyrylium cycle in a
2,4,6-triphenylpyrylium analog.42 This reaction is shown
in Scheme 8. The pyrylium ring is formed when the pH of
the solution is adjusted to acidic conditions. After the addition of sulfide at only 5 105 M, the color of the solution
changes dramatically from magenta to blue, which is easily detectable by the naked eye. This is explained by the
formation of the thiopyrylium ring (27).
The reversible covalent interactions between an aldehyde
and hydrogen sulfite are useful for detection applications
in the wine industry, where hydrogen sulfite is used to
stabilize wine during/after fermentation. As an example,
the colorimetric sensor for hydrogen sulfite developed by
the Mohr group52 possesses an alkylamino azobenzene
backbone, which is similar to the amine sensors developed
by the same group. Instead of the trifluoroacetyl group,
formyl group is used to bind with the bisulfite anion. A
36-nm red shift (from 524 to 488 nm) was observed when
the compound binds to bisulfite anion, leading to a color
change from pink to orange (Scheme 9).
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
OH
SH, H+
OH
OH
25
Scheme 8
H+
26 (Magenta)
27 (Blue)
N
N
O2 N
O
H
HSO3 C8H17
3.4
OH
SO3H
H
N
N
C8H17
28 (Pink)
Scheme 9
29 (Orange)
CN
H N
O
H N
O
F3C CN
F3C
30 (Non-fluorescent)
31 (Fluorescent)
NO2
NO2
H
N
O2N
CF3
H
N
CN
O2N
CF3
CN
32 (Colorless)
33 (Orange-red)
N
CN
H
O S
O
O N
O S H
O
O N
CF3
CF3
CN
34
35 (Increased fluorescence
intensity)
O
Et
N
CN
H
O
CF3
36
Scheme 10
O
CN
Et
N
CN
H
O
NC
CF3
37 (Decreased fluorescence
intensity)
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
Concepts
(NO3)4
Zn2+
Zn2+
N
Zn2+
O
P
O
O
2+
O O
P
O
O
Zn2+
Phosphorylated
peptide
Phosphorylated
peptide
Zn
N
38
Figure 4
Zn2+
O
METALANION/LIGAND
INTERACTIONS
NO2
Zn2+
N
Zn2+
N
N
Figure 5
phate.
OO N
P
O
O P O
O
39
O
N
N
Zn2+
N
Zn2+
N
N
N
OO N
P
O
O P O
O
O
40
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
F3C
R
N
41
Figure 6
(ClO4)2
N
43 (Weakly fluorescent)
Scheme 11
Target
protein
Ni
NO2
44 (Strongly fluorescent)
Binding
washing
Figure 7
NO2
NH
O
Zn2+N
N
2+
Zn N
N
42
Target
protein
Zn2+
HN
NH
NH N
Cd
NH N
H
OH
R=
HN
Ni
Target
protein
Imidazole
elution
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
10
Concepts
O
R'SH
R'S
N
R
O
45
O
46
O
R=
or
Bu
N
or
ACKNOWLEDGMENTS
NH
Scheme 12
CONCLUSION
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014
11
37. R. Yang, K. Li, F. Liu, et al. Anal. Chem., 2003, 75, 3908.
Supramolecular Chemistry: From Molecules to Nanomaterials, Online 2012 John Wiley & Sons, Ltd.
This article is 2012 John Wiley & Sons, Ltd.
This article was published in the Supramolecular Chemistry: From Molecules to Nanomaterials in 2012 by John Wiley & Sons, Ltd.
DOI: 10.1002/9780470661345.smc014