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Department of Civil Engineering, University of Ottawa, 161 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology, and Immunology, University of
Ottawa, Ontario K1H 8M5, Canada
c
John Meunier Inc., Montreal, Quebec H4S 2B3, Canada
b
article info
abstract
Article history:
This study aims to investigate moving bed biofilm reactor (MBBR) nitrification rates, ni-
trifying biofilm morphology, biomass viability as well as bacterial community shifts during
4 November 2013
potential ammonia removal upgrade units to numerous northern region treatment sys-
tems. The average laboratory MBBR ammonia removal rate after long-term exposure to 1 C
Keywords:
the biofilm were investigated using variable pressure electron scanning microscope
Nitrification
(VPSEM) imaging and confocal laser scanning microscope (CLSM) imaging in combination
Cold temperature
with viability live/dead staining. The biofilm thickness along with the number of viable
MBBR
cells showed significant increases after long-term exposure to 1 C. Hence, this study
Biofilm morphology
observed nitrifying bacteria with higher activities at warm temperatures and a slightly
Biomass viability
greater quantity of nitrifying bacteria with lower activities at cold temperatures in nitri-
fying MBBR biofilms. Using DNA sequencing analysis, Nitrosomonas and Nitrosospira
(ammonia oxidizers) as well as Nitrospira (nitrite oxidizer) were identified and no population shift was observed between 20 C and after long-term exposure to 1 C.
2013 Elsevier Ltd. All rights reserved.
1.
Introduction
216
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
Di Trapani et al., 2013; Zhang et al., 2013). Hence, MBBR systems have demonstrated promise as a potential upgrade or
replacement technology for low temperature ammonia
removal.
Passive wastewater treatment systems such as wetlands
and lagoons are common in northern regions due to availability of land. For example, there are currently over 1000
lagoon systems operating as wastewater treatment facilities
in Canada alone and due to recent ammonia effluent
discharge regulations many of these existing treatment lagoons will require upgrading in the near future (Canada
Gazette, 2012). To date, MBBR upgrade units that have
demonstrated the ability to nitrify at low temperatures have
been investigated and implemented to treat the effluent from
the first or middle lagoon of a multiple lagoon treatment
systems; where temperature drops are limited and the carbon/nitrogen (C/N) ratio is higher than the downstream ponds
(Delatolla et al., 2011). Higher C/N ratios, specifically the
presence of influent readily degradable carbon, increases the
quantity of heterotrophic growth in the system. The heterotrophs outcompete the nitrifiers for oxygen and may significantly alter the activity of the nitrifying communities and the
ability of the system to remove ammonia. The optimum C/N
ratio for nitrification exists at the end of the carbon treatment
train, or in the last lagoon, where temperatures can drop as
low as 1 C for extended periods of time. Installing the nitrifying MBBR unit after the last pond will allow the upgrade
system to benefit from low C/N ratios, which will reduce the
size and operational costs of the upgrade unit and prevent
carbon removal redundancy in the downstream ponds. Longterm effects of exposure to 1 C on MBBR nitrifying biofilm,
however, have yet to be investigated or quantified.
Up to as recent as 20 years ago, autotrophic bacteria
responsible for nitrification were not believed to experience a
population shift as temperatures decrease, where the same
bacterial population was believed to be responsible for nitrification at warm and cold temperatures (Wijffels et al., 1995).
More recently however, it has been observed that the
ammonia oxidizing bacteria (AOB) populations, which coexist in wastewater, demonstrate shifts in their community
populations with a change in temperature (Hallin et al., 2005;
Layton et al., 2005; Siripong and Rittmann, 2007). Nitrite
oxidizing bacteria (NOB), however, have been shown to not
experience a population shift during temporal changes but
rather during substrate scarcity (Gieseke et al., 2003; Haseborg
et al., 2010; Huang et al., 2010). Nitrosomonas, co-existing with
Nitrosospira, are considered to be the dominant AOB population in wastewaters with the two common genera of NOB in
wastewater being Nitrobacter and Nitrospira (Siripong and
Rittmann, 2007; Ducey et al., 2010; Park et al., 2008;
Rodriguez-Caballero et al., 2012; Daims et al., 1999; Wagner
et al., 2002).
The aim of this work was to investigate the response of
nitrifying biofilm, the embedded biomass and population
shifts of the embedded bacterial communities as laboratory
MBBR treatment systems are exposed to cold temperatures.
Particularly, this study aims to characterize the effects of
long-term exposure to 1 C on the thickness and morphology
of MBBR nitrifying biofilms, the viability of cells in the biofilm
and bacterial community shifts.
2.
2.1.
Biofilm samples
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
surface area than R2. The end of the start-up phase was
defined by steady ammonia removal rates in the laboratory
reactors at 20 C.
2.2.
Nitrification kinetics
2.3.
Variable pressure electron scanning microscope (VPSEM) imaging was used for direct imaging of biofilm specimens
without pre-treatment; thus eliminating the destructive effects of traditional SEM pre-treatment. Samples were
analyzed at a pressure of 40 Pa using a Vega II-XMU SEM
(Tescan USA Inc., Cranberry, PA). Images were captured at
magnifications between 20 and 2000. Biofilm thicknesses
were directly measured using Altas image processing software (Tescan USA Inc., Cranberry, PA). Twenty thickness
measurements along with morphological observational images were acquired at random locations on four carriers for
each reactor at each experimental phase.
2.5.
2.6.
2.4.
217
DNA was extracted from the biofilm using a FastDNA spin kit
(MP Biomedicals, Santa Ana, CA) in which two mechanical
lysis cycles were performed with a FastPrep Instrument (MP
Biomedicals, Santa Ana, CA) set at speed 6.0 for 40 s. Extracted
DNA was stored at 20 C until it was used for library
construction.
Table 1 e Library construction primers: Paired-end sequencing adapter (green nucleotides); barcodes (underlined
nucleotides); V6 universal primers (red nucleotides, Sundquist et al., 2007); Illumina flow-cell adapters sequence (blue
nucleotides).
218
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
2.7.
2.8.
Statistical analysis
3.
3.2.
Biofilm morphology
Results
R1
R2
Temperature
25
3.1.
Nitrification kinetics
The nitrification kinetics of the laboratory MBBRs during longterm exposure to 1 C are expressed as the average surface
area normalized removal rates compared to 20 C (Fig. 1,
adapted from Hoang et al., in press). Error bars indicating 95%
confidence intervals are too small to be seen in Fig. 1. Nitrogen
mass balances of removed NH
4 -N and produced NO2 -N and
-N
at
20
C
and
1
C
were
consistently
less
than
10%,
with
NO
3
-N
removed
being
slightly
higher
than
NO
-N
and
NO
NH
4
2
3 -N
produced; which was expected since NH4 -N will be preferentially used as a source of nitrogen for cell synthesis (Rusten
et al., 1995). The average removal rates of the two reactors at
1 C after four months of exposure relative to the removal
rates at 20 C were measured to be approximately 18 5.1%
100
90
Steady temperature decline:
acclimatization from 20C to 1C
80
20
70
15
60
50
10
40
30
20
10
0
0
0
50
100
150
Time (d)
Temperature (oC)
DNA amplification was achieved by using a Phusion HighFidelity PCR Master Mix (Thermo Fisher Scientific Inc., Waltham, MA) where a two-step polymerase chain reaction (PCR)
targeting the V6 hyper-variable region of the 16S rRNA was
performed as previously described using a barcoding
approach (Arthur et al., 2012). The primers used in the first and
second PCR reaction are listed in Table 1. Next, the PCR
amplicons were inspected by electrophoresis on a 2% agarose
gel and purified with a Montage PCR96 cleanup kit (EMD Millipore, Billerica, MA). A Quant-iT dsDNA BR Assay Kit (Life
Technologies, Burlington, Canada) was used to quantify the
purified amplicons. Amplicons were then pooled and
sequenced on one lane of an Illumina Hiseq2500 at the center
for applied genomics (TCAG, Toronto, Canada) generating
paired-end reads of 2100 bases (a mean of 901,070 331,232
high quality reads were generated per sample).
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
219
Fig. 2 e VPSEM images of nitrifying biofilm attached to a single K3 carrier sampled from R1 at 1 C: a) image of biofilm
coverage on the inner portion of the K3 at 316 magnification, b) and c) images displaying biofilm thicknesses on an edge and
on a ridge of the K3 carrier at 390 magnification, respectively, and d) image displaying the morphology of the biofilm at
32000 magnification.
3.3.
Viability of biomass
R1
R2
250
Thickness (m)
200
150
100
50
0
20oC
1oC (1 month)
1oC (4 months)
3.4.
Bacterial population
220
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
Fig. 4 e CLSM images of nitrifying biofilm sampled from R2 at 1 C. Live cells are illuminated green and dead cells are
illuminated red with images being 143 3 143 mm in lateral area: (a) biofilm layer at the top of the biofilm, closest to the
biofilm/liquid interface and (b) biofilm layer 5 mm deeper into the biofilm and hence closer to the carrier. (For interpretation
of the references to color in this figure legend, the reader is referred to the web version of this article.)
R1
R2
9.0
8.0
7.0
6.0
5.0
4.0
3.0
2.0
1.0
0.0
20oC
1oC (1 month)
1oC (4 months)
4.
Discussion
4.1.
Effect of low temperature on MBBR nitrification
kinetics
Previous studies and practical experiences have shown a sharp
decrease in nitrification rates at low temperatures (Sharma and
Ahlert, 1977; Painter and Loveless, 1983; Wessman and
Johnson, 2006; Houweling et al., 2007; Delatolla et al., 2011).
The MBBR ammonia removal rate after long exposure to 1 C in
this study are measured to be 18 5.1% compared to the rate at
20 C. The decrease of ammonia removal rates as temperatures
decrease may be indicative of a loss or death of the nitrifying
bacteria during cold temperature exposure. However, the kinetic data shows that both reactors are able to quickly recover
from the rapid temperature changes and perform at high
removal rates for the remainder of the experiment at 1 C. The
ability of the MBBR reactors to quickly adapt and recover from
two temperature spikes suggests that the nitrifiers are not lost
nor lysed but rather maintained in the biofilm. Both laboratory
MBBRs show an immediate increase in ammonia removal rates
while experiencing two rapid temperature increases. A similar
response was observed during temperature shock experiments
of a nitrifying biological aerated filtration system (Delatolla
et al., 2009). These findings suggest that the nitrifying bacteria
exist at a higher level of activity at higher temperatures and at a
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
Proteobacteria
Nitrospirae
Bacteroidetes
Abundance (%)
R1
20 C
R2
20 C
R1
1 C
R2
1 C
51
3.8
25
44
20
10
47
7.9
8.5
43
30
15
4.2.
4.3.
AOB
AOB
NOB
Genus
Nitrosomonas
Nitrosospira
Nitrospira
Abundance (%)
R1
20 C
R2
20 C
R1
1 C
R2
1 C
3.7
0.63
3.8
2.5
1.8
20
0.0022
0.00021
7.9
9.4
0.41
31
221
of viable cells after long exposure to cold temperatures demonstrates that a larger quantity of viable cells are promoted at
1 C as compared to 20 C; however based on the observed
decrease in nitrification rates, these cells are significantly less
active with respect to the oxidation of ammonia and nitrite.
Furthermore, the live cell coverage in the younger biofilm
(R2) was similar to that in R1 at 20 C after one month exposure
at 1 C but was significantly greater than R1 after four months
of exposure to 1 C (Fig. 5). It should be noted that throughout
the study and specifically after four months of exposure to
1 C the more mature biofilm in R1 showed significantly
greater biofilm thicknesses than the thicknesses measured in
R2. Nonetheless, both reactors demonstrated similar kinetics
at all temperatures. Hence, the younger and thinner biofilm in
R2 maintained comparable rates of nitrification with respect
to a more mature and thicker biofilm in R1 at all temperatures
in the study by maintaining a larger quantity of viable biofilm
cells per area of biofilm. As such, the operation of the laboratory MBBR reactors demonstrate that a start-up time of 6
weeks at warm temperatures is sufficient to achieve cold
temperature nitrification for a four month period at 1 C.
Furthermore, an extended operational time at warm temperatures, beyond the start-up period of 6 weeks, did not
demonstrate a kinetic advantage during the first four month
period of nitrification at 1 C; nor did the extended operational
time at warm temperatures demonstrate any indications of
the nitrifying biofilm being less susceptible to biofilm loss or
washout. Although viable cell quantities were shown to increase with exposure to cold temperature and differences
were observed between younger and more mature biofilms,
no significant change in dead cell coverage was observed between the two reactors or at the different temperatures of the
study. The ratio of dead cells to viable cells was approximately
0.4 0.3 at 20 C and decreased slightly to 0.2 0.1 at 1 C for
both reactors. The increased biofilm volume and quantity of
viable cells with stagnant percentage coverage of dead cells
suggests evidence of biofilm growth as opposed to cell death
due to cold temperature exposure.
The biofilm and biomass data of this study demonstrate
that the MBBR reactors did not show any loss of biofilm or loss
of viable cell counts as nitrification rates were shown to
decrease during 1 C temperature exposure. The loss of biofilm
and/or loss of active nitrifying cells during periods of lower
kinetics can be indicative that MBBR systems would be at risk
of losing nitrification during long term 1 C exposure.
Contrarily the biofilm and viable cell counts were shown to
increase in the laboratory MBBR reactors, indicating that
MBBR units have shown the potential of maintaining a stable
and robust biofilm with active embedded nitrifying biomass
during long term 1 C exposure. Hence, these findings, based
on controlled laboratory conditions, support subsequent
studies of optimizing these units for cold temperature
nitrification.
4.4.
Nitrification kinetics normalized to biofilm and
biomass at 1 C
The application of VPSEM and CLSM imaging in combination
with viability staining provided valuable information with
respect to the response of the MBBR biofilm and biomass to
222
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
(1)
(2)
R1
R2
Removal rates
at 1 C relative
to 20 C (%)
BVRRA at 1 C
relative
to 20 C (%)
VCRRA at 1 C
relative to 20 C (%)
19 5.5
17 4.7
12 6.4
11 7.7
86
75
4.5.
The AOB and NOB genera identified in this study are in general
agreement with those found in past studies investigating
microbial communities of nitrifying biofilms (Daims et al.,
1999; Schramm et al., 1999; Gieseke et al., 2001, 2003; Okabe
et al., 2002; Park et al., 2008; Vejmelkova et al., 2012). This
study demonstrates that Nitrosomonas and Nitrosospira coexist at both 20 C and 1 C. The decrease in relative abundance of Nitrosospira observed in both mature (R1) and young
(R2) biofilms after long-term exposure to 1 C in this work is
supported by previous studies that demonstrate that Nitrosospira is more sensitive to temperature than Nitrosomonas
(Park et al., 2008). The observed increase in relative abundance
of Nitrosomonas in the young biofilm and the decrease in
relative abundance in the mature biofilm during exposure to
cold temperatures may be related to differences in bacterial
communities in the young and mature biofilm and their subsequent response to exposure to cold temperatures.
Previous studies have shown that Nitrobacter and Nitrospira
are the two common genera of NOBs in wastewater (Siripong
and Rittmann, 2007; Daims et al., 1999; Wagner et al., 1996),
with recent work demonstrating that Nitrospira, not Nitrobacter, are the dominant nitrite oxidizers in wastewater systems (Daims et al., 1999; Matsumoto et al., 2007; Zeng et al.,
2009). In particular, previous work showed that Nitrobacter
was dominant when the available substrate was abundant
and Nitrospira thrived when substrate concentrations were
scarce or when the system experienced temporary nitrite elevations (Gieseke et al., 2003; Haseborg et al., 2010; Huang
et al., 2010; Schramm et al., 1999; Blackburne et al., 2007). No
NOB population shift was observed in this study with Nitrospira being identified as the genera responsible for nitrite
oxidation at both 20 C and 1 C, while Nitrobacter was not
detected in either reactor throughout the entire experimental
phase. Nitrospira was not only shown to be the only identified
NOB genera in both young and mature biofilms at 20 C and
during long exposures to 1 C, but its relative abundance was
also observed to increase in both reactors during exposure to
cold temperatures. Hence, these observations support the kinetic and microscopic findings that acclimatized nitrifying
MBBRs are capable of maintaining or increasing the relative
abundance of the NOB population during long exposure to
very cold temperatures.
The non-nitrifying bacteria identified in this study coincide
with those identified in past studies investigating activated
sludge and biofilm systems treating wastewater (Okabe et al.,
2002; Benedict and Carlson, 1971; Wagner and Loy, 2002).
Numerous heterotrophic species belonging to the Bacteroidetes, Chloroflexi, Proteobacteria, and Acidobacteria phyla were
identified in this study along with the nitrifying bacteria
belonging to the Proteobacteria (AOB) and Nitrospirae (NOB)
phyla. It has been reported that species of the Proteobacteria
phylum form dense biofilm layers close to the surface of
substrata and provide a growth matrix for nitrifiers (Ducey
w a t e r r e s e a r c h 4 9 ( 2 0 1 4 ) 2 1 5 e2 2 4
5.
Conclusion
Acknowledgments
The authors are grateful for financial support from the National Sciences and Engineering Research Council of Canada
(NSERC) and Veolia Water. The authors graciously thank
Jianqun Wang (Carleton University), Raed Hanania and Kim
Wong (University of Ottawa) for their help with VPSEM and
CLSM image acquisitions.
223
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