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Review
Corneal dystrophies and genetics in the
International Committee for Classication
of Corneal Dystrophies era: a review
Andrea L Vincent FRANZCO
Department of Ophthalmology, National Eye Centre, Faculty of Medical and Health Science, University of Auckland, Auckland,
New Zealand
ABSTRACT
Many of the corneal dystrophies have now been
genetically characterized, and a system was established
in 2008 by The International Committee for Classification of Corneal Dystrophies (IC3D) in an attempt to
standardize the nomenclature. IC3D provided a classification system whereby all dystrophies can be categorized on the basis of the underlying genetic knowledge.
Since that time, further work has established even
more phenotypic and allelic heterogeneity than anticipated, particular for Fuchs endothelial corneal dystrophy and posterior polymorphous dystrophy. Using
genome-wide association studies, a number of genes
are now implicated both in normal corneal quantitative traits, such as central corneal thickness, as well as
in disease. There is also a trend towards functional
characterization of the genetic variants involved to
elucidate the pathophysiology of these entities. This
review article will provide an overview of the knowledge to date, with an emphasis on findings since the
IC3D classification was published in 2008.
Key words: corneal dystrophy, genetic disease, genetics, molecular genetics.
INTRODUCTION
Heralded by the completion of sequencing the
human genome, the last decade has seen an expo-
Correspondence: Dr Andrea L Vincent, Department of Ophthalmology, National Eye Centre, Faculty of Medical and Health Science, University of
Auckland, Private Bag 92019, Auckland, New Zealand. Email: a.vincent@auckland.ac.nz
Received 10 April 2013; accepted 6 June 2013.
Competing/conflicts of interest: No stated conflict of interest.
Funding sources: Save Sight Society of New Zealand, Aukland Medical Research Foundation, Maurice and Phyllis Paykel Trust, University
of Auckland.
2013 Royal Australian and New Zealand College of Ophthalmologists
IC3D CLASSIFICATION
In order to try and standardize the nomenclature, and
create a universal system for classification, a committee was established the IC3D consisting of
corneal subspecialists from many different countries.
These experts came together to create a consensus
document. This was published in 20081 and attempts
to create a standardized nomenclature for each dystrophy, as well as a grading system depending on
whether the underlying genetic defect is known, a
loci known, evidence for a genetic cause suspected or
unknown. That document remains to date a comprehensive review of the genetics of corneal dystrophy
as documented at the end of 2008. Therefore, without
reiterating that information, this article will review
5
the classification system used, and look at how this
information is put to use, and the advancements
in corneal dystrophy genetics since then. One area
in particular that has led to advancements is the
genome-wide association study (GWAS) (discussed
in greater detail later) and a trend towards characterization of the functional effect of genetic variation.
The IC3D classification uses four distinct categories based on phenotype and genotype, and placed
known corneal dystrophies into a given category. A
category 1 dystrophy is one that is well defined, the
gene has been mapped and identified and specific
mutations in that gene are known. The TGFBI group
of dystrophies fit into this category. Granular corneal
dystrophy type 1 is now the official title for the entity
mentioned earlier; however Avellino corneal dystrophy, predominantly associated with the R124H
mutation in TGFBI, is now officially designated
granular corneal dystrophy type 2 (granular-lattice),
and the other alternative yet perhaps more descriptive name, combined granular-lattice corneal dystrophy, is also out of favour.
Category 2 is reserved for those in which a specific
chromosomal locus (or loci) has been mapped for a
well-defined corneal dystrophy, but the underlying
gene is not yet identified. An example would be the
Thiel-Behnke corneal dystrophy (which retains its
eponymous title TBCD). This was mapped to chromosome 10q23-24,6 but no gene yet identified.
Similarly, with the posterior polymorphous corneal
dystrophy (PPCD) 1 locus on chromosome 20p,
when mutations in visual system homeobox 1 gene
(VSX1) were initially characterized,7 the gene sat
within the originally mapped PPCD1 locus,8 but
when the locus was further refined in a Czech population, VSX1 actually sat outside the locus.9 It has
subsequently been excluded as the causative gene in
the pedigrees that have linked to that locus.1012
Category 3 is reserved for well-characterized and
well-defined corneal dystrophies, although one in
which no linkage/loci have yet been elucidated.
A number of pedigrees with unique anterior membrane corneal dystrophies have been described
including our previous work13 in which we excluded
known genes and loci by a combination of mutational analysis and linkage. To move a category 3
dystrophy to the level of category 2 can now, in
theory, be relatively more easily achieved using a
genome wide scan with a single-nucleotide polymorphism (SNP) microarray to establish a clear
chromosomal locus. Once a locus (or loci) is identified, next-generation sequencing within this linked
region(s) can be used to establish gene identification.
Ideally, further families with similar phenotypes and
autosomal dominant inheritance will be identified
and can be tested against any putative gene of interest
within this region, identified from the genome-wide
Vincent
scan, which segregates with the disease, makes biological sense and is expressed in the eye.
The final category, category 4, is essentially for
all other dystrophies, suspected new, or previously
documented, corneal dystrophy, although the evidence for it being a distinct entity is not yet convincing. One example is the central cloudy dystrophy of
Franois. The IC3D rationale for naming this a category 4 dystrophy is that in many of the reports,
there is no documentation of familial inheritance,
and therefore, it is feasible these cases were actually
posterior crocodile shagreen.
Identication of outliers
The molecular investigation of a diverse spectrum of
corneal phenotypes investigated in large and small
population cohorts alike has shown the ability to
identify outliers, that is, those with features, or even
slightly atypical features of a given genotype or
syndrome/dystrophy, yet (i) either do not carry
mutations within the known gene, opening the door
for identification of alternative molecular mechanisms, or (ii) the corneal phenotype may actually be
a manifestation of a systemic disorder. An atypical
lattice dystrophy observed prior to a diagnosis of a
heavy chain amyloidosis is an example.14 A 61-yearold male with no family history ocular history presented with contact lens intolerance and noted to
have a bilateral, atypical, fine, midperipheral lattice
corneal dystrophy with minor central subepithelial
scarring. (Fig. 1). TGFBI mutational analysis was
unremarkable. Two years later when he presented
with nephrotic syndrome Gelsolin (GSN) analysis
was undertaken and was also unremarkable. Renal
biopsy showed amyloid deposition, which on direct
protein sequencing by mass spectrometry was demonstrated to be heavy-chain deposition rather than
the more usual light-chain deposition. This demonstrates the utility of gene testing, when a negative
gene test should alert one to consider other atypical
diagnoses.
De novo mutations
Lack of a family history, particular in autosomal
dominant conditions, does not exclude heritability
a number of de novo mutations have been described
with the TGFBI-associated dystrophies,4,18,19 with
somatic mosaicism also thought to contribute to this
finding.20
Figure 1. Slit-lamp photograph of subjects cornea demonstrating scattered subepithelial opacication and ne branching
lattice lines (arrow heads).
Table 1. Genetic/allelic heterogeneity. This table lists two corneal dystrophies Fuchs endothelial corneal dystrophy (FECD) and posterior polymorphous corneal dystrophy (PPCD) for which more than one causative genetic mechanism has been identied
Corneal dystrophy
FECD
PPCD
Locus
FECD1
FECD2
FECD3
?
FECD4
FECD5
FECD6
FECD7
SVD
PPCD
PPCD1
PPCD2
PPCD3
Other
Location
1p34.3p32.3
13pterq12.13
18q21.2q21.3
18q12q21
20p13p12
5q33.1q35.2
10p11.2
9p24.1p22.1
2q37.1
20p11.23
20p11.2
1p34.3p32.3
10p11.2
2q36q37
Gene
COL8A2
unknown
(TCF4)
LOXHD1
SLC4A11
unknown
ZEB1
unknown
KCNJ13
unknown
VSX1
COL8A2
ZEB1
COL4A3
Reference
23
MIM
34
136 800
610 158
613 627
613 072
613 268
613 269
613 270
613 271
193 230
122 000
1220 000
609 140
609 141
120 070
COL4A3, collagen, type IV, alpha 3; COL8A2, collagen, type VIII, alpha 2; KCNJ13, potassium inwardly-rectifying channel, subfamily J,
member 13; MIM, mendelian inheritance in man; LOXHD1, lipoxygenase homology domains 1; SLC4A11, solute carrier family 4, sodium
borate transporter, member 11; SVD, snowake vitreoretinal degeneration; TCF4, transcription factor 4; VSX1, visual system homeobox
1; ZEB1, zinc nger E-box binding homeodomain 1.
Further investigation of these genes also demonstrates the interplay with allelic and phenotypic
heterogeneity (Table 2). Although COL8A2 was initially described as one molecular cause of PPCD
(PPCD2),23 it was then also demonstrated to play a
role in FECD.34 The role of ZEB1 has expanded to be
causative of FECD6 in a small number of cases.35,36
The mutations in ZEB1 associated with the late onset
FECD are missense compared with the truncating and nonsense mutations observed in ZEB1
in PPCD3. A missense mutation is also described in
keratoconus.37 VSX1 continues to be implicated in
both PPCD and keratoconus, although a minor
player.38
Environmental factors
Environmental triggers such as laser in situ keratomileusis have been documented to precipitate
previously undiagnosed GCD2 post-laser in situ
keratomileusis, especially in the Korean population,39 emphasizing the importance of careful ocular
examination and family ocular history in the preoperative assessment. Feasibly, a genetic screen could
be undertaken as part of a routine work-up now that
the costs of testing have reduced, particularly with
the ease of which DNA can be obtained using saliva
collection kits, such as Oragene (DNA Genotek,
Ottawa, ON, Canada).
Non-ocular phenotype
Careful phenotyping of non-ocular features looking away from the eye may also reveal clues as to
the underlying pathology, as in PPCD associated
Vincent
Table 2. Phenotypic heterogeneity. This table highlights genes elucidated for the corneal dystrophies, and discussed in this review,
which demonstrate phenotypic heterogeneity and the corneal phenotypes with which they have been associated
Gene
Location
SLC4A11
20p13p12
VSX1
20p11.21
ZEB1
10p11
COL8A2
1p34.3
Locus
FECD4
CHED2
CDPD
PPCD1
KTCN1
CAASDS
PPCD3
FECD6
KTCN
PPCD2
FECD1
Phenotype
FECD
CHED-autosomal recessive
Harboyan syndrome
PPCD
Keratoconus
Craniofacial anomalies and anterior
segment dysgenesis
PPCD
FECD
Keratoconus
PPCD
FECD
Reference
32
MIM
Vithana et al.
Vithana et al.54
Desir et al.60
Heon et al.7
Heon et al.7
Mintz-Hittner et al.33
613 268
217 700
217 400
122 000
148 300
614 195
Krafchak et al.21
Riazuddin et al.36
Muszynska et al.37
Biswas et al.23
Biswas et al.23
609 141
613 270
609 140
136 800
CAASDS, craniofacial anomalies and anterior segment dysgenesis; CHED, congenital hereditary endothelial dystrophy; COL8A2,
collagen, type VIII, alpha 2; FECD, Fuchs endothelial corneal dystrophy; KTCN1, keratoconus 1; MIM, mendelian inheritance in man; PPCD,
posterior polymorphous corneal dystrophy; SLC4A11, solute carrier family 4, sodium borate transporter, member 11; VSX1, visual system
homeobox 1; ZEB1, zinc nger E-box binding homeodomain 1.
9
diensis variant64 and the Helsinglandica variant.65
Using the gene discovery technologies now available, it is likely that further gene identification will
be possible using these unique families, and any
identified gene variant may provide clues to the
wound-healing process in both health and disease.
GWAS
Another tool in the approach to identify genes
involved in complex disease is to use GWAS in casecontrol cohorts. These studies aim to identify SNPs
at which the allele frequency differs significantly
between cases and controls. The finding of such an
SNP then implies that a potentially causative variant
is located in linkage disequilibrium with that SNP
(i.e. usually inherited with the SNP due to physical
proximity and disinclination towards recombination). This technique was used successfully in the
identification of the TCF4 risk allele with FECD. A
drawback, however, is the requirement for large
populations of cases and controls. An alternative
approach is to look at the spectrum of relevant quantitative traits in a normal population in order to
determine which genetic variants SNPs are associated with a given trait. Recently, such GWAS have
probed the genetic determinants of central corneal
thickness, in particular as a determinant or risk factor
for the development of glaucoma,6668 with evidence
suggesting the role of collagen genes and a zinc
finger binding protein, zinc finger protein 469
(ZNF469), that causes autosomal recessive brittle
cornea syndrome.69 A GWAS has also highlighted
other genes including ZNF469 as associated with in
the pathogenesis of keratoconus,70 with heterozygous pathogenic changes detected in up to 46% of
individuals tested.71
Keratoconus and ectasias are not true corneal
dystrophies, but rather processes of bilateral noninflammatory progressive thinning of the cornea; a
recent review article covers this in greater detail.72
Keratoconus is mentioned in this discussion in part
because of the overlap with genes causative of other
corneal dystrophies (genetic heterogeneity and phenotypic heterogeneity; see Table 2) and the reported
co-occurrence of keratoconus with many different
corneal dystrophies.
The power of GWAS to help pinpoint the underlying genetic mechanisms in corneal disease and in
particular the evidence that central corneal thickness
is clearly genetically determined is one significant
finding in health and therefore in disease.
Meesmann corneal dystrophy is due to mutations
in either the keratin 12 or keratin 3 genes. Recent
work directed at the common founder mutation in
keratin 12, Arg135Thr, using allele-specific small
interfering RNA silencing shows promise in the
10
Vincent
future as a potential personalized medicine for Meesmann corneal dystrophy and potentially for other
ocular surface pathologies with dominant-negative
or gain-of-function disease causing mechanisms.73
CONCLUSION
Very few inherited corneal dystrophies remain
without any underlying molecular cause identified.
Although genes have been identified for many entities, for a number of these dystrophies only a small
number of cases remain genetically characterized, in
particular FECD and PPCD. The current tools of
next-generation sequencing, bioinformatics analysis
and genetic variation databases should lead the way
to more rapid identification of novel genetic mechanisms, particularly for those dystrophies for which
linkage has already been established. A greater
probing of the underlying functional mechanisms
and interactions of the mutant proteins is that each
dystrophy may in turn highlight and identify therapeutic targets. Marked phenotypic and allelic heterogeneity observed suggests that collectively, the genes
implicated are involved in collagen or extracellular matrix pathways, with complex but related
interactions.
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