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I.
A. Overview
Small and simple in design
Less complex inside, more complex outside
Lack a true nucleus, nuclear membrane
Cytoplasm is immobile (no endo or exocytosis)
Multiply asexually by binary fission (no mitosis)
Protein synthesis mediated by 70s not 80s ribosomes
Genetic materialsingle supercoiled circular strand of DNA (nucleoid)
1) Basic structure:
a) cell wall
b) cell membrane
c) cytoplasm
d) nuclear body
a)fimbrea
B. Basic structures:
1. Cell wall:
It is the outer most component of all bacteria. It is a complex, semi rigid, multilayered structure located external
to the cytoplasmic membrane.
The thickness and chemical composition of bacterial cell wall depending upon the bacterial type, gram positive
or gram negative.
Difference in Gram reaction is due to difference in physical and chemical makeup of the cell wall.
Peptidoglycan consist of horizontal layers of alternating polymer of N-acetyl glucosamine (NAG) and N-acetyl
muramic acid (NAM) linked by glycosidic bond. Horizontal layers are linked to each other by vertical layers of
peptides.
Peptidoglycan
Gram Positive
Gram Negative
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wall
Teichoic acid
Lipoproteins
Lipopolysacharides (endotoxin)
Phospholipids
If such treated cells are placed in osmotically protective media, they librate:
Protoplasts from Gram positive.
If such cells are able to grow and divide they are called L-forms. Unlike mycoplasma, L-form can revert to
parental from upon removal of the cell wall inhibitor.
The cell wall of acid fast bacteria, such as Mycobacterium consists of 60% mycolic acid, a waxy lipid.
2. Cytoplasmic membrane:
Function: To maintain a constant environment inside the cell by controlled transport mechanisms including:
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3. Intracytoplasmic structures
1. Cytoplasm:
Refers to the substances in the cell inside the plasma membrane. Cytoplasm is thick and
semitransparent. It is about 80% water and contains primarily proteins, carbohydrates, lipids, inorganic
ions and many molecular weight compounds.
2. The nucleid:
3. Ribosomes:
They are the site of protein synthesis. Tightly packed spherical particles present in the cytoplasm.
Composed from 40% protein and 60 % RNA bacterial ribosomes are 70 in size with 30 S and 50 S
subunits.
4. Plasmids:
They are extrachromosomal double stranded circular DNA molecules that are capable of replicating
independent of the bacterial chrosome.
C. External structures:
1. Glycocalyx (meaning sugar coat): It is a viscous gelatinous layer outside the cell wall of some species
composed of polysaccharide, exception anthrax bacillus has a polypeptide.
2
types:
a) Capsule
b) Slime layer
A. Capsule
-
The presence of capsule can be determined by using negative stain such as the Indian ink.
Capsulated cells from smooth colonies (s), while non capsulated cells from rough colonies (R)
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The organ of motility in all motile bacteria. The move the bacteria towards nutrients and other
attractants (chemotaxis).
Flagella are thin filamentous appendages that are attached to the cell wall and the cytoplasmic
membrane by a basal layer.
Composed of a single protein flagellin which is antigenic and differ in different bacterial species.
3. Fimbriae (pilli):
Hair like filaments that extend outwards from the cell surface, shorter and thinner than flagella and
composed of pilin protein.
Bacterial endospore:
They are highly resistant resting forms of gram positive bacteria. They are found upon exposure to
unfavourable condition (e.g depletion of nutrient, heat, dryness)
Spore formation is a characteristic feature of gram positive bacilli in the aerobic genus bacillus (B.
antheracis). And anaerobic genus Clostridium (e.g. C. tetai)
An endospore return to its vegetative state by process called germination when external conditions
became favourable.
Spores are formed only in vitro (not develop in animal tissue). Spores are highly resistant to heat,
boiling and chemical.
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II.
Bacterial physiology
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They possess Catalase and Superoxide dismutase enzymes and cannot ferment sugar.
Reduction of O2 give toxic superoxide radical (O2-) and hydrogen peroxide (H2O2) which will convert to water
and O2 by catalase or to water only by peroxidase.
2- Facultative anaerobes: can grow in the presence or absence of O2. They respire using O2 to generate energy by
aerobic respiration if it is present. However, they generate energy in the absence of O2. They possess Catalse
and Superoxide dismutase.
3- Obligate anaerobes: Grow only in the complete absence of O2 and die in its presence (eg. Clostridium tetani).
In the presence of O2, two toxic molecules are produced: hydrogen peroxide and superoxide ion. And these
bacteria lack the enzymes catalase and superoxide dismutase that breakdown these molecules.
4- Micro-aerophilic bacteria: they require a low oxygen tension for growth, lower than that present in atmosphere
(eg. Campylobacter). High concentration may not be lethal but they inhibit growth. They have small amount of
catalase and superoxide dismutase and produce small amount of growth.
5- Capnophiles: require higher levels of carbon dioxide than that found in normal atmospheric pressure (Nisseria)
Bacterial Metabolism
Metabolism:
1. Catabolism: Consist of the break down (oxidation) of food (macromoles) into micromoles + energy and
reducing power.
2. Anabolism: Consist of synthesis of macromoles from micromoles this reaction requires energy.
Energy sources:
1. Light (photosynthesis): Photosynthetic organism trap solar energy with the help of chlorophyll. Light energy is
converted to chemical energy in a serious of chemical reactions and ATP generated.
2. Inorganic sources: Molecules such as H2, S, NH3, NO2 and Fe++ can be utilized.
3. Organic sources: (all industrially and medically important bacteria).
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2. Anaerobic respiration.
3. Fermentation.
1. Aerobic respiration:
Glucose is the most common carbon source and particularly all organisms whether they are aerobic or anaerobic
subject glucose first to the glycolytic cycles. This cycle gives common intermediate, Pyruvic.
In glycolytic process the generation of ATP at the 2 steps known as substrate phosphorylation.
In aerobic respiration carried by aerobic bacteria, Pyruvic acid can be further oxidized by tricarboxylic acid
cycles or krebs cycles.
At each step in the TCA cycle, whenever a pair of electrons (H) is liberated, they can enter the respiratory chain
known as the electron transport system (ETS) (Oxidative phosphorylation).
H2 and electrons from glycolysis, also H2 from TCA are transferred to NAD which enter ETS generating
energy.
A pair of electrons carried through this system allows the formation of 3 molecules of ATP. This is known as
oxidative phosphorylation.
2. Fermentation:
In anaerobic bacteria and facultative anaerobes (e.g. E.coli) in the absence of O2, after the initial stage
3. Anaerobic respiration:
Some anaerobic organisms utilize inorganic molecules (other than O2 such as SO4 and NO2) as final electron
acceptor.
N.B:
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Bacterial Reproduction
Growth:
1. Growth cycle of bacterial population is by transverse binary fission. i.e. one of cell divides into two equal
daughter cells similar in genetic character to the mother cell.
2. The time interval required for the cell to divide or for the population to double is known as the generation time.
3. Not all the bacteria have the same generation time.
4. The generation time is strongly dependent upon the nutrient in the medium and on prevailing physical
conditions.
5. Where one bacterium is inoculated into a medium after one generation has elapsed, there are 2 cells; after
another generation, 4 cells; after the third generation, 8 cells.
Bacterial growth curve
If a small number of bacteria inoculated into a liquid nutrient medium and the bacteria are counted at frequent
intervals and the results plotted, a characteristic growth curve with four phases is obtained:
a) Lag phase: It is the first phase during which no cell division occurs. The bacteria adapt to the
environment by formation of new enzymes and macromolecules needed for replication.
b) Exponential or logarithmic phase: During this phase rapid cell division occurs and the number of
bacterial cells increases steadily by time. Many antibiotics are effective during this phase, e.g. beta lactam
drugs, such as penicillin, which acts when the cell is forming peptidoglycan.
c) Stationary phase: During this phase any bacterial multiplication which takes place is balanced by an
increased death rate due to the exhaustion of nutrients and the accumulation of toxic products. Thus the number
of living organisms remains constant.
d) Decline or death phase: As the exhaustion of nutrients and accumulation of toxic products continue,
the death rate exceeds the multiplication rate and the number of viable bacteria decreases.
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log.
bact.
count
Logarithmic phase
Stationary
phase
decline phase
lag phase
Time
Batch cultures: where the nutrients are not renewed, exponential growth is limited to a few generations.
Continuous cultures: a system where bacterial cultures can be maintained in a state of exponential growth
over long periods of time. Designed to relieve the conditions that stop exponential growth in batch cultures.
Two devices can be used in continuous culture CHEMOSTAT and TURBIDOSTAT can be used to
maintain a bacterial population at a constant density.
IV.
Bacterial genetics:
It is a double stranded DNA molecule which is circular and wound on itself to form the molecular mass.
Alternation to one another to which is attached the purine and pyrimidine bases.
Guanine (G)... (C) Cytosine
The two strands are associated by hydrogen bonds between (A-T) or (G-C). Thus the sequence of bases
along one strand must be matched on the opposite strand by a complementary sequence.
G and C are attached by 3 hydrogen bonds; while A and T are attached by 2 hydrogen bonds so G-C
stronger than A-T.
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DNA
RNA
Double stranded
Single stranded
Deoxyribose sugar
Ribose sugar
Bases: A,G,C,T
Bases: A,G,C,U.
1 type
The sequence of nucleotides in a gene determines the amino acid sequence and hence the structure of
protein.
Gene: Units of heredity. They are segments on the chromosome or DNA that carry the information for a
specific character or a specific structure.
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2. Translation:
mRNA and tRNA come together on the surface of the ribosome. Each tRNA finds its
complementary nucleotide triplet on mRNA and the amino acid is linked with the adjacent one to
form a polypeptide chain.
The entire mRNA is translated into a corresponding sequence of animo acids linked to form
polypeptide chains and proteins are formed.
For each amino acid, there is a specific tRNA, which attaches to the amino acid at one end, where at
the other end, it has a triplet base (anti-codon) complementary to the triplet of bases on the mRNA
(Codon).
Bacterial Variation:
Phenotypic variation
Genotypic variation
genetic changes
Irreversible (Permanent)
Not-heritable
Heritable
Example:
Changes in the colony morphology from
smooth to rough.
Example:
1. Mutation
2. Gene transfer:
A. Transformation.
B. Conjugation
C. Transduction.
I.
Mutation:
This is due to change in the sequence of bases in the DNA double helix.
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This alerts the genetic code (codon) and hence a different amino acid results, thus changing the protein
product of the gene affected. It can be induced at a higher rate by mutagenic agents such as X-rays,
ultraviolet light and alkylating agents.
II.
Gene transfer:
There are 3 types of gene transfer from one bacterium to the other leading to bacterial variation:
1. Transformation.
2. Conjugation.
3. Transduction.
1. Transformation:
This occurs when a recipient call takes up a fragment of bacteria DNA, Present free in the surrounding
medium.
This DNA fragment recombines with the bacterial chromosome which is transformed and the new genes are
expressed leading to changes in the characters of recipient cells.
In transformation with plasmid DNA, it become re-established in the recipient cell and autonomously
replicates.
2. Conjugation:
It is the mating of 2 bacterial cells, of the same or different species during which DNA is transferred from
the donor to the recipient cell.
As the 2 come in contact, one strand of the plasmid separates and passes from F+ donor cell to the Frecipient cell (does not contain F plasmid) through the conjugation tube formed by sex pilus.
The process ends with an F+ recipient cells that aquires a plasmid copy.
3. Transduction:
Fragment of chromosomal DNA can be transferred or transduced into a second bacterium by bacteriophage.
V. Viruses:
Viruses are obligate intracellular parasites; they only grow on living cells.
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Replication of viruses depends upon the metabolic energy and the macromolecular synthetic
machinery of the host cell.
Bacteriophages are viruses that parasite bacterial cells. Different types of bacteria serve as hosts
for one or more phages.
Opportunistic infection
Under certain conditions, commensal bacteria may cause disease and should be considered as potential
pathogens or opportunists. Some of these conditions are:
1. Lowered host defense mechanisms
2. Alteration of the host tissues
3. Change in the natural habitat of the organisms
Carriers: is an apparently healthy individual who carries a pathogenic organism without showing clinical
manifestations, and can transmit this organism to other susceptible individuals.
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1. Microbial factors
This depends on the ability of different strains to produce a toxin and on its potency.
Virulence factors of bacteria: These are certain structures or products that help microorganisms to
overcome body defense mechanisms and cause disease.
I. Adherence factors.
II. Invasive factors. 1. Antiphagocytic actions
2. Extracellular enzymes (Exoenzymes)
3. Ability to survive intracellular.
III. Toxin production
I. Adherence factors
Certain bacteria have specialized structures that help their adhesion to host cell mucus membranes.
For example: Pili of Nisseria. gonorroeae and E.coli mediate the attachment of organisms to the urinary
tract epithelium. Fimbriae causes adherence of streptococci to buccal mucosa.
This is the ability to invade tissue, multiply and spread rapidly causing the inflammatory process.
1. Antiphagocytic action of certain surface components that protect the bacteria from phagocytosis and
destruction, e.g. the capsule of many organisms, e.g. pneumococci.
2. Extracellular enzymes (Exoenzymes):
These enzymes produced by some by some bacteria that increase its pathogenicity
a- Collagenase and hyaluronidase: which degrade collagen and hyaluronic acid respectively, allowing the
spread of bacteria (e.g. cellulitis caused by Strep. pyogens).
b- Lecithinase (Cl. perfringens) break down lecithin.
c- Coagulase (Staph. aureus) coagulates plasma with the deposition of a fibrin wall around staphylococcal
lesions which help them to persist.
d- Streptokinase (fibrinolysin) and streptodornase (deoxyribonuclease) are produced by strept. pyogenes the
former causes lysis of fibrin clots and the latter break down DNA.
e- Immunoglobin A (IgA) protease (N.gonorrhoeae) degrade the secretory IgA on mucus surfaces.
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3. Ability to survive intracellular: Some organisms can survive and grow intracellular escaping intracellular
killing by phagocytic cells (Mycobacterium tuberculosis).
III. Toxin production: Toxins are bacterial products which have a direct harmful action on tissue cells.
Two types: Exotoxin and Endotoxin.
Exotoxins
1. Definition
Endotoxins
2. Location of genes
Plasmid or bacteriophage
Bacterial chromosome
3. Composition
Proteins
Lipopolysaccharides.
4. Action
Specific (neurotoxin)
5. Heat stability
Labile, destroyed at 60 C
6. Immunogenicity
Strong
Weak
7. Toxicity
Strong
Weak
8. Convertibility to toxoid
Yes
No
9. Produced by
10. Example
C. diphtheria
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