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50
C
for
20
min.
More
will
precipitate
if
you
heat
it
longer,
but
yours
may
also
precipitate.
No
harm
in
doing
this
over
and
over
again!
Analysis
tells
us
total
protein
(including
contamina.ng
protein),
total
enzyme
describes
a
total
amount
of
enzyme
by
rela.ng
it
to
how
much
total
enzyma.c
ac.vity
there
is,
giving
us
a
reference
to
our
total
yield,
and
there
is
a
cost
with
each
step.
Heat
treatment
is
cheap!
No.ce
that
total
protein
has
dropped,
but
there
is
no
drop
in
enzyme
(units),
so
we
havent
lost
any
of
our
enzyme,
so
we
have
100%
yield
Uh
oh!
We
dont
want
any
of
our
enzyme
precipita.ng,
so
50%
is
too
high.
You
can
hit
cancel
and
you
get
a
mulligan!
Well,
we
never
did
that
50%
anymore!
Keep
lowering
un.l
you
dont
get
any
enzyme
precipita.on.
How
about
43%?
Good.
0.0%
of
enzyme,
but
we
lose
a
third
of
total
protein.
Thats
a
lot
of
contaminants
that
we
have
removed!
Were
down
to
389
mg
of
total
protein,
and
we
havent
lost
any
of
our
enzyme
yet,
so
s.ll
at
100%
yield.
Lets
run
a
2-dimensional
gel
to
see
all
of
our
contaminants
and
to
nd
out
what
our
pI
is
for
our
protein.
Hibng
Blot
tells
us
which
one
is
specically
ours.
We
have
a
pI
of
~5.8,
and
a
MW
of
~22
kDa
OK,
we
have
a
lot
of
op.ons
for
ion
exchange.
Lets
try
DEAE
(posi.vely
charged,
anion
exchanger,
no.ce
the
informa.on
at
the
boEom,
and
it
will
tell
you
all
of
this)
Dierent
condi.ons
gives
you
dierent
results.
The
blue
curve
is
the
A280.
This
is
a
measurement
of
protein
concentra.on.
The
red
curve
is
enzyme
ac.vity.
This
tells
you
where
your
protein
is.
The
pink
line
is
an
indica.on
of
the
gradient.
pH 7, 0 to 1 M pH 7, 0 to 0.3 M pH 7, 0 to 0.2 M
S.ll
a
lot
of
proteins
in
with
ours,
but
we
got
rid
of
a
bunch.
We
can
pool
frac.ons
based
on
our
gel
and
our
ac.vity.
No.ce
that
the
ac.vity
is
more
sensi.ve
than
the
gel.
By
the
gel
our
protein
is
in
64-84,
but
by
ac.vity
it
is
in
60-86.
No.ce
that
frac.on
72
looks
pure,
so
we
could
just
take
that
frac.on,
but
wed
lose
a
LOT
of
our
protein
Some
proteins
might
not
like
the
salt.
If
your
enzyme
isnt
aected,
go
for
it!
Free
purica.on
for
you!
If
we
lower
the
amount
of
salt
we
start
with,
we
can
get
our
enzyme
to
bind
but
the
contaminant
wont
bind
now
at
1.8
M
salt
(instead
of
2.0
M
salt).
This
is
why
stepwise
gradients
are
so
common
in
hydrophobic
columns.
A
quick
1D
PAGE
shows
one
major
impurity.
Gel
ltra.on
is
a
good
polishing
step!
There
are
a
lot
of
op.ons.
There
is
some
informa.on
about
these
columns
if
you
scroll
down
further
on
this
page
Purity
is
everything
now!
Lets
throw
away
some
protein
to
get
rid
of
the
contamina.ng
protein.
This
is
what
wed
like
from
you:
Show
us
a
single
band
on
the
gel,
and
give
us
the
EXACT
condi.ons
you
used
for
each
column
(buer
condi.ons,
what
column,
what
frac.ons
you
collected,
etc.)
and
you
get
bonus
points
for
having
the
highest
yield
and
having
the
lowest
cost.
Im
sure
with
some
eort
you
can
get
more
protein
than
I
did
here
and
get
it
with
lower
cost.