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CDKs PHOSPHORYLATE A VARIETY OF SUBSTRATE
PROTEINS
Lamin
Makes up highly organized meshworks
of filaments in the nuclear envelope
Phosphorylation depolymerizes lamin
Actin and myosin
Contraction pinches a dividing cell into
two equal parts (cytokinesis)
After cell division: myosin
phosphorylated again dissociates
from actin inactivation of
contraction
Retinoblastoma protein (pRb)
Tumor suppressor protein
Arrests cell division in G1 when DNA
damage is detected
Cytokines
Hormone-like molecules (peptides)
Immune system regulation,
inflammation, fever
Can also induce cell division
Produced in almost every nucleated
cell
Examples:
Interleukins activation and
Note: Interval of LOW CDK-CYCLIN ACTIVITY chemotaxis of various immune cells
when pre-replication complexes are assembled. Tumor necrosis factor (TNF)
promotion of inflammation
CYCLIN-DEPENDENT PROTEIN KINASES (CDKs) GM-CSF growth of granulocytes
and monocytes
Growth factors and cytokines initiate cells Interferon induction of resistance
to synthesize CDKs and cyclins via the of cells to viral infection
ERK/MAPK pathway
Growth factors FUNDAMENTAL PROPERTIES OF CELL CYCLE
Soluble and diffusible polypeptides; REGULATION
steroids Alteration of CDK activity
Regulate growth and differentiation of Checkpoints
numerous cell types Irreversibility
Participate in repair and regeneration, Balanced growth and division
chemotaxis, and metabolism
Families: REGULATORS OF CDKs
Platelet-derived growth factor Cyclin-dependent activating kinases (CAKs)
(PDGF) family bone formation, Add activating phosphates to CDKs
soft-tissue repair/wound healing CDC25 phosphatase
Vascular endothelial growth factor Remove inhibitory phosphate from CDKs
(VEGF) family angiogenesis CDK inhibitors (CKIs)
Epidermal growth factor (EGF) Ubiquitin ligases
family proliferation of mucosal Wee1
cells (healing of GI ulcers), G2/M-phase kinase that adds an
regeneration of epidermis inhibiting phosphate to the Tyr-15
Insulin family IGFs residue of CDK1
Hepatocyte growth factor organ
development and regeneration, Note: Each of the G1/S CDKs is regulated by
hematopoiesis specific CAK and Wee1-like kinase isoforms
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THE CDK-FREE INTERVAL T loop has 2 critical residues:
Threonine 160
DNA pre-replication complexes (pre-RC) phosphorylation exposes ATP-
assemble into chromosomes (at replication binding site of CDK even more
origins) during early G1. Tyrosine 15 phosphorylation
(added by Wee1) blocks the
ATP-binding site of CDK
inactivated
M phase (Cyclin B; CDK1)
M-phase CDK-cyclin complexes
(maturation-promoting factors, MPFs)
are activated
Phosphate on Tyr 15 of CDK1 is
removed by protein tyrosine
phosphatase (Cdc25 phosphatase)
Active complex phosphorylates multiple
proteins resulting in mitosis
Chromosome condensation,
Note: A pre-replication complex (pre-RC) is a breakdown of nuclear membrane,
protein complex that forms at the origin of mitotic spindle formation,
replication during the initiation step of DNA cytokinesis
replication. Formation of the pre-RC is required Ubiquitin system (anaphase promoting
for DNA replication to occur. Complete and complex) is activated
faithful replication of the genome ensures that
each daughter cell will carry the same genetic CELL CYCLE CHECKPOINTS
information as the parent cell. Accordingly,
formation of the pre-RC is a very important part of G1/S checkpoint (Restriction point)
the cell cycle. Trigger: ATM (ataxia telangiectasia
mutated) protein
CDKs AND CYCLINS IN ACTION Chromatin-bound serine/threonine
protein kinase, recruited and
G1 to S (Cyclin D; CDKs4, 6) activated by DNA double-strand
Catalytic role stimulation of breaks
expression of genes required for G1 Phosphorylates and activates tumor
progression suppressors
Phosphorylation of pRB liberates (p53 guardian of the genome)
E2F (transcription factor) expression of CKIs p16 and p21
Phosphorylation of other Phosphorylates a protein kinase
transcription factors that target Chk2, which inhibits Cdc25
and trigger genes encoding phosphatase
components of S-phase CDK-cyclin
complex (complexed with CKI) Note: All cells face a battery of insults to their
Non-catalytic role sink and reservoir DNA from endogenous sources, for example
for CDK inhibitors (CKI) that inhibit S- spontaneous cytosine deamination, replication
phase CDKs (CDK2) errors and base damage from oxygen radicals
Just before S phase, G1-phase CDK- generated as a product of normal metabolism.
cyclin complexes degrade CKI S Together with exogenous sources: UV, dietary
phase begins toxins, aromatic hydrocarbons, among others, this
adds up to a significant value that has been
estimated as 10 000 40 000 single strand breaks
(SSBs) and up to 50 double strand breaks (DSBs) per
cell per day.
G1 CHECKPOINT
- Typically arrests cell division if conditions
make cell division impossible or if the cell
passes into G0 for an extended period.
Ataxia telangiectasia mutated (ATM) is a
serine/threonine protein kinase that is recruited
and activated by DNA double-strand breaks. It
phosphorylates several key proteins that initiate
activation of the DNA damage checkpoint, leading
to cell cycle arrest, DNA repair or apoptosis.
S to G2 (Cyclin E, A; CDK2) Several of these targets, including p53, CHK2 and
Activated S-phase CDK-cyclin H2AX are tumor suppressors.
complexes phosphorylate the pre-RC G2 CHECKPOINT
assembled early in G1 DNA - Cdc25, under favorable conditions,
replication x 1 removes the inhibitory phosphates present
M-phase CDKs and cyclins synthesized within the maturation promoting factor
(but inactive) (MPF) (cyclin B/CDK1 complex)
Recall: T loop on CDK covers its
ATP-binding site
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G2/M checkpoint Membrane alterations and recognition
Trigger: ATR (ataxia telangiectasia by phagocytes
mutated-related) protein Must be differentiated from necrotic cell
Also a chromatin- bound death
serine/threonine protein kinase Unobservable, does not induce an
related to ATM inflammatory response
Phosphorylates another Products of degradation are released in
serine/threonine protein kinase a controlled process
Chk1, which phosphorylates Cdc25 Pathways:
phosphatase ubiquitinylated and Intrinsic (mitochondrial) pathway
destroyed Extrinsic (death receptor) pathway
Triggers:
DNA damage too extensive for effective
repair
Lack of necessary growth factors
Presence of death signal proteins
Pathologic conditions triggering it:
Viral infections
Severe stresses (heat, UV light, gamma
irradiation)
Can also be a physiologic event:
During embryonic development
Menstruation
With WBCs Note: Apaf-1 (adaptor proteins) apoptotic
protease-activating factor 1
APOPTOSIS Caspase recruitment domains, or Caspase
activation and recruitment domains (CARDs), are
Morphologic changes that occur: interaction motifs found in a wide array of
Cell shrinkage proteins, typically those involved in processes
Chromatin condensation relating to inflammation and apoptosis. These
Formation of cytoplasmic blebs and domains mediate the formation of larger protein
apoptotic bodies complexes via direct interactions between
Phagocytosis of apoptotic cells or cell individual CARDs. CARD domains are found on a
bodies strikingly wide range of proteins, including
Biochemical processes that occur: helicases, kinases, mitochondrial proteins,
Activation of caspases and caspases, and other cytoplasmic factors.
endonucleases protein and DNA
breakdown
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INTRINSIC APOPTOSIS PATHWAY: THE BCL-2
FAMILY OF PROTEINS
BH3-only proteins
Direct activators: BID, BIM
Sensitizers/de-repressors: HRK,
BAD, BIK, BMP, Noxa, PUMA
In the absence of DNA damage or stresses (e.g.
BH-3 ONLY PROTEINS APPEAR TO BE PIVOTAL IN hypoxia), p53 is polyubiquitylated by ubiquitin
THIS PROCESS ligases, then degraded by proteasomes.
Rheostat model direct binding and activation of Note: If DNA damage is too great to repair, higher
Bax/Bak concentrations of p53, due to COVALENT
MODIFICATIONS (phosphorylation and acetylation
to prevent polyubiquitylation), results in p53-
induced apoptosis
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Whether cell death occurs depends on the relative concentrations of pro-apoptotic and anti-apoptotic proteins
in the outer mitochondrial membrane
AIF
apoptosis inducing factor chromatin condensation and DNA degradation Smac
Second mitochondria-derived activator of caspases (also AIP binding)
also known as DIABLO (direct IAB binding protein with low isoelectric point) Omi
a serine protease; mutations linked to development of Parkinsons disease (mice and humans) XIAP
X-linked inhibitor of apoptosis
Death receptors:
TNFR1 (TNF receptor 1)
Fas
TRAIL (TNF-related apoptosis-inducing ligand receptor)
Ligands: TNF (TNF) and FasL
Cytosolic adaptor proteins: TRADD and FADD
TNF receptor-/Fas-associated protein with death domain
Ligand binding prompts these adaptor proteins to bind to intracellular regions of death receptors
(also contain death domains)
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PATHWAY INTEGRATION
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-----------------------------------------------CANCER------------------------------------------------
REVIEW: G PROTEINS
Small GTPases
Activated state bound to GTP
Intrinsic GTPase activity GTP GDP
GAPs accelerate GTP hydrolysis
GEFs catalyzes GTP exchange
Molecular switch
P loop
Thr 35 and Gly 60
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TYPES OF GENETIC MUTATION They are far less adhesive to one another
(metastasis)
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dose-response relationship is demonstrated for all - A constitutional mutation can also occur
sarcomas and, for the first time in humans, for very soon after fertilization, or continue
soft tissue sarcomas. Retinoblastoma patients from a previous constitutional mutation in
should be examined for new cancers and followed a parent
into later life to determine whether their SOMATIC MUTATIONS (acquired mutations)
extraordinary cancer risk extends to common - Involve cells outside the dedicated
cancers of adulthood. reproductive group and which are not
usually transmitted to descendants.
Stability genes (caretaker genes) LI-FRAUMENI SYNDROME
Subtype of TSGs - Sarcoma, breast, leukemia and adrenal
Function in repair of major genetic gland (SBLA) syndrome
defects - Because the TP53 gene is responsible for
p53 initiating DNA repair mechanisms and/or
Guardian of the genome apoptosis upon detection of DNA damage,
If the defects are too many to LiFraumeni syndrome, with one of the two
repair apoptosis p53 copies already mutated, predisposes a
Mutations lead to high frequency of person to cancer development because only
unrepaired damage in a variety of one additional mutation (in the second p53
genes (includes proto-oncogenes allele) is necessary to impair a significant
and other TSGs) portion of the tumor suppressor system.
Somatic mutations high This "second hit", which can be affected by
frequency of mutations in environmental factors, can directly lead to
diverse cancers both p53 alleles being impaired and thus
Germline mutations Li- potentiate cancer development. Indeed,
Fraumeni syndrome (rare) persons with LiFraumeni syndrome have
an approximately 25-fold increased risk of
Note: GERM LINE MUTATIONS developing a malignant tumor by age 50
- can be passed on to descendants through than the population average, and are at
their reproductive cells risk for a wide range of malignancies, with
- gives rise to a constitutional mutation in particularly high occurrences of breast
the offspring, that is, a mutation that is cancer, brain tumors, acute leukemia, soft
present in every cell tissue sarcomas, bone sarcomas, and
adrenal cortical carcinoma.
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OTHER CARETAKER TUMOR SUPPRESSOR GENES Retinoblastoma
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ONCOGENES
Onco- = onkos () = bulk, mass, or
tumor
Derived from protooncogenes
Genes that encode proteins that
promote cell division or promote
resistance to apoptosis and cell survival
Activating mutations oncogenes
(autosomal dominant)
First oncogene discovered was a viral one
(src)
Most prominent oncogene in human cancers
is mutated Ras
In 25-30% of human cancers
GTPase activity is lost
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Transcription factors
c-Myc gene
Regulatory gene (chrom. 8) encoding
transcription factor myc
Normally, myc regulates cell
proliferation, differentiation, and
apoptosis by regulating p53
Translocation (8; 14)
overexpression uncontrolled
proliferation of B cells (Burkitts
lymphoma
Epstein-Barr virus (EBV) infection
Note: Regulatory gene is a gene involved in Note: The development of a malignant tumor
controlling the expression of one or more other requires a permanent change in genetic
gene information in a cell line and it takes years to
Starry sky lipid droplets (no one knows why) complete.
Chemo regimens: R-CHOP, EPOCH-R (R =
Rituximab monoclonal antibody against CD20 on B
cells)
Surgery
For diagnosis and therapy
Curative
Palliative (debulking/control of
symptoms)
CARCINOGENESIS Radiation
Target DNA
Development involves both genetic and Free radical generation
epigenetic events altered expression of Not all cells are created equal
numerous genes Curative, palliative
A multistep process accumulation of Chemotherapy
multiple gene mutations (genetic hits) Antimetabolites mimic purines,
are required for cancer to develop pyrimidines
Alkylators cause direct DNA damage
Minimum of 4 changes will generate Vinca alkaloids spindle poisons
transformation: Topoisomerase inhibitors
pRb suppression Monoclonal antibodies adjuvant therapy;
p53 suppression target oncogene products
Ras activation Complementary and alternative therapies
Telomerase overexpression
Tumor initiation
Normal cells are changed so they are
able to form tumors -END-
Tumor promotion
Various factors permit descendants of
initiated cells to survive and expand in Please refer to the PowerPoint Presentation for
number much clearer images. Good luck and God bless
Tumor progression Batch 2016!
Increased growth speed and
invasiveness occur
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