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RESUMEN
La dihidrolipoamida deshidrogenasa P64k de Neisseria meningitidis participa en la catálisis del complejo
multienzimático de la piruvato deshidrogenasa. El antígeno P64k de Neisseria meningitidis es una
dihidrolipoamida deshidrogenasa localizada parcialmente en las membranas celulares del meningococo. Teniendo
en cuenta que las dihidrolipoamida deshidrogenasas normalmente se encuentran asociadas a los grandes complejos
multienzimáticos de las α-cetoacido deshidrogenasas en el citoplasma, este patrón de localización resulta inusual.
En este trabajo se ha tratado de determinar si al menos parte de la P64k participa en la catálisis de la piruvato o
la a-oxoglutarato deshidrogenasas, usando para ello cepas de N. meningitidis mutantes para la P64k y las
subunidades E1 y E2 del complejo de la piruvato deshidrogenasa. Se demuestra que P64k está ligada
transcripcionalmente a los genes codificantes para las enzimas de este complejo mediante el uso de Northern
blotting; y mediante pruebas de crecimiento en medio definido usando acetato o succinato como fuente de
carbono, así como mediante mediciones enzimáticas directas en dichos mutantes, se establece que P64k participa
en la catálisis del complejo de la piruvato deshidrogenasa; y que en contraste con la mayoría de las bacterias Gram
negativas, no es compartida con el complejo de la a-oxoglutarato deshidrogenasa.
Palabras Claves: Neisseria meningitidis, piruvato deshidrogenasa, lipoamida deshidrogenasa, ensayo de
complementación, P64k, mutante, metabolismo, bioquímica
Materials and Methods DNA to the blunted Kanr cassette. Only 249 and 105 4. Guillén G, Alvarez A, Silva R, Morera V,
bp of the P64k (lpdA) gene are retained in pM110. González S, Musacchio A et al. Expression
Bacterial strains and growth conditions DNA probes specific for the aceE, aceF and lpdA in Escherichia coli of the lpdA gene, pro-
tein sequence analysis and immunologi-
Escherichia coli strain XL-1 Blue [7] was used for all genes were prepared by purifying the Kpn I or EcoR I cal characterization of the P64k protein
cloning. It was grown in Luria Broth (LB) at 37 ºC, fragments from pM122 and pM2 respectively, or by from Neisseria meningitidis. Biotechnol
Appl Biochem 1998;27 ( Pt 3):189-96.
supplemented accordingly with 100 mg/mL ampicillin amplifying lpdA entirely using PCR with oligonucle-
or 50 mg/mL kanamycin. Neisseria meningitidis strain otides 1573 (5’ TTCCATGGTAGATAAAAG 3’) and 5. Ala’ Aldeen DA, Westphal AH, de Kok
H355 (B:15:P1.19,15) [8] and its mutant derivatives 1206 (5’ AAAAAAGAAAACGCCTCC 3’). A, Weston V, Atta MS, Baldwin TJ et al. Clon-
ing, sequencing, characterisation and
described in this work were grown at 37 ºC in brain implications for vaccine design of the
heart infusion (BHI, Oxoid, UK) 1.5% (w/v) agar plates Recombinant DNA techniques novel dihydrolipoyl acetyltransferase of
Neisseria meningitidis. J Med Microbiol
in a candle jar, or in BHI cultures inoculated to an initial Standard recombinant DNA techniques were carried 1996;45:419-32.
OD620 of 0.1 and supplemented with 100 mg/mL kana- out essentially as previously described [11]. DNA
6. de Kok A, Hengeveld AF, Martin A,
mycin as necessary. Culture stocks were prepared in restriction and modification enzymes were used fol- Westphal AH. The pyruvate dehydroge-
10% (w/v) skim milk and stored at -70 ºC. lowing the manufacturers’ recommendations. For the nase multi-enzyme complex from Gram-
transformation of meningococci, exponentially grow- negative bacteria. Biochim Biophys Acta
Plasmids and probes ing cells were resuspended in BHI supplemented with
1998;1385:353-66.
The plasmids used in this study have inserts span- 10 mM MgCl2 at 0.05 OD620 and incubated statically 7. Bullock WO, Fernández JM, Short JM.
XL-1Blue: A high efficiency plasmid trans-
ning different regions of the meningococcal PDC gene with plasmid DNA at 10 mg/mL for 1 h at 37 ºC. forming recA Escherichia coli K12 strain with
cluster where either the putative E1p (aceE), E2p Afterwards they were plated onto BHI-kanamycin beta-galactosidase selection. Biotechniques
1987;5:376-8.
(aceF), or E3 (P64k, lpdA) genes have been inacti- plates, grown 12 to 24 h, and resistant colonies were
vated by insertion or replacement with the kanamy- purified twice by streaking onto selective plates be- 8. Maiden MCJ, Suker J, McKenna AJ,
cin resistance (Kanr) cassette from pUC4K [9] (Figure fore preparing stocks for analyses. Purification of men- Bygraves JA, Feavers IM. Comparison of
the class 1 outer membrane proteins of
1). pM140 was constructed by the insertion of a ingococcal chromosomal DNA and total RNA followed eight serological reference strains of Neis-
blunted (BamH I-Klenow) KanR cassette between the published procedures [12, 13]. Hybond-N+ nylon seria meningitidis. Mol Microbiol 1991;5:
727-36.
Sty I sites of the meningococcal E1p (aceE) gene, pre- membranes and the ECL Direct Nucleic Acid Label-
viously amplified by PCR using the oligonucleotides ling and Detection System were used for Southern 9. Taylor LA, Rose RE. A correction in the
nucleotide sequence of the Tn903 kana-
2195 (5’ TTTCAAGTTTTCCCTTGTTT 3’) and and Northern blots, following the instructions sup- mycin resistance determinant in pUC4K.
2196 (5’ TCGTCAACGGCGATGGTGTC 3’) and plied by the manufacturer (Amersham Pharmacia Nucl Acids Res 1988;16:358.
cloned into pMOSBlue (Amersham Pharmacia Biotech Biotech UK Ltd.). 10. Henikoff S. Unidirectional digestion
UK Ltd.). pM117 was made by inserting the same with exonuclease III creates targeted
cassette into the EcoR V site on the fragment of the SDS-PAGE and Western blotting breakpoints for DNA sequencing. Gene
1984;28:351-9.
meningococcal E2p gene (aceF) present in pM2 [3]. Sodium-dodecyl sulphate polyacrylamide gel electro-
Plasmid pM110 was constructed by the digestion of phoresis, protein transfer to nitrocellulose filters and 11. Sambrook J, Fritsch EF, Maniatis T. Mo-
lecular cloning: A laboratory manual.
pM3 [3] with Xho I and the subsequent Exonuclease immunodetection were performed as described [14, New York, USA: Cold Spring Harbor Labo-
III/S1 nuclease treatment [10], ligating the resulting 15]. Protein concentration was determined with a modi- ratory Press; 1989.
Eco R I (4286)
r
aceE ::Kan
pM140
aceF ::Kan r
pM117
r
lpdA ::Kan
pM110
Figure 1. Regions of the N. meningitidis B385 PDC gene cluster spanned by the inserts of plasmids pM140, pM117 and pM110,
and sites of insertion of the Kmr determinant. Only their relevant features and restriction sites are shown. p1, p2 and p3 are
putative promoters found using a neural network-based prediction method [22]; T1 is the only canonical rho-independent
transcriptional terminator found by manually scanning the sequence of the cluster.
Enzyme assays
Fresh meningococcal cultures grown in BHI-kanamy- 43 kDa
cin were washed twice and resuspended to an OD620
of 5 with 50 mM phosphate buffer pH 7 at 4 ºC, 35 kDa
9.4 kb
lysed by sonication, and spun at 20000 x g, 4 ºC for 1
h. The supernatant was immediately used for measur-
ing dihydrolipoamide dehydrogenase (E3), pyruvate 14 kDa
6.6 kb
dehydrogenase (PDC) and a-oxoglutarate dehydroge-
nase (OGDC) activities as described [20], substitut-
ing 5 mM a-oxoglutarate for pyruvate in the later case.
Results 4.3 kb
Construction of meningococcal mutant strains
Plasmids pM140 (E1p::Kmr), pM117 (E2p::Kmr) and
pM110 (P64k::Kmr) were used for transforming N.
meningitidis strain H355 and rescuing transformants
in which the Kanr cassette has been integrated into the
genome via homologous recombination with its flank-
ing homology arms; thus replacing the wild-type gene
with an inactivated counterpart. Figure 2A shows the
results of the analysis by Southern blotting of chro- Figure 2. Analysis of meningococcal aceE (E1p), aceF (E2p) and lpdA (P64k) mutants. A) Southern blot of
chromosomal DNA (1 µg/well) from wild type N. meningitidis H355 (lane 1) and either E1p- (lanes 2-3)
mosomal DNA from potential H355 aceE (E1p-) and or E2p- (lanes 4-5) mutants, digested with Hind III and probed with an lpdA-specific DNA fragment. See
H355 aceF (E2p-) mutant strains. Only 1 hybridizing Figure 1 for a Hind III map of the analyzed region. B) Western blot of total cellular protein from wild type
target is found in both cases, confirming the occur- N. meningitidis H355 (lane 1) and P64k mutants (lanes 2-3) probed with a mixture of the P64k-specific
rence of a double recombination event. Since the size MAbs 448 and 114.
difference between the wild-type and mutated Hind
III fragments is too small to be resolved by agarose Figure 3 shows Northern blots of total RNA from
gel electrophoresis, further proof for correct replace- wild type, E1p-, E2p-, and P64k (E3-)strains probed 12. Kath N. A rapid DNA isolation proce-
ment of the wild type gene in the E1p- clones was specifically for the aceE, aceF and lpdA genes. dure from petri dish grown clinical bacte-
rial isolates. Nucl Acids Res 1990;18:6462.
obtained by PCR amplification of their aceE locus In all three cases a mRNA of approximately 7.5 kb
with primers 2195 and 2196 (Data not shown). Clones is detected in the wild type strain when using either 13. Shaw JH, Clewell DB. Complete nucle-
otide sequence of macrolide-lincosamide-
represented in lanes 1 and 3 were designated AM803 aceE-, aceF- or lpdA-specific probes, suggesting that streptogramin B-resistance transposon
and AM802, and working stocks were prepared for the three genes are transcribed into a single polycis- Tn917 in Streptococcus faecalis. J Bacteriol
1985;164:782-96.
further analysis. tronic mRNA. That this is indeed the case is con-
Figure 2 B shows a Western blot using a mixture of firmed by the disappearance or mobility shift of this 14. Laemmli UK. Cleavage of structural
MAbs specific for P64k against an H355 lpdA (P64k ) RNA species upon insertion of the Kmr cassette into proteins during the assembly of the head of
bacteriophage T4. Nature 1970;227:
transformant obtained with plasmid pM110 and pre- either aceE, aceF or lpdA in the three mutants ana- 680-5.
viously checked by Southern blotting (data not lyzed, using any of the probes for detection.
15. Towbin H, Staehelin T, Gordon J. Elec-
shown). The absence of detectable P64k confirms the A second RNA band is detectable in the wild type trophoretic transfer of proteins from poly-
replacement of the wild type gene in all cases. This strain when using either aceE or aceF, but not lpdA acrylamide gels to nitrocellulose sheets:
procedure and some applications. Bio-
clone was designated AM801, and frozen stocks were probes; with a relative mobility of approximately 6 kb. technology 1979;24:145-9.
prepared for later analysis. This is most probably the result not of the endonucle-
olytic degradation of the 7.5 kb mRNA, but of an alter- 16. Goa J. A microbiuret method for pro-
Transcriptional organization native termination of transcription at a site between the
tein determination: Determination of total
protein in cerebrospinal fluid. Scand J Clin
of the PDC gene cluster aceF and lpdA genes, since the amount of the 6 kb mRNA Lab Invest 1954;5:218-22.
The transcriptional organization of the PDC gene clus- in the lpdA mutant compared to the wild type remains 17. Alvarez A, Guillén GE, Nazábal C,
ter was analyzed by Northern blotting since the Kmr unchanged even though large changes in mobility and Quintana D, Carpio E, Duarte CA et al.,
inventors; System for the expression of
expression cassette alters the size and stability of the concentration can be detected for the larger messenger heterologous antigens as fusion proteins.
mRNA transcribed from the locus it is inserted on. (see blots probed with the aceE and aceF genes). EP 0 816 506 B1. 1997 Jan. 17.
1 2 3 4 1 2 3 4 1 2 3 4
B C
p2
p1 p3
T1
~7.5 kb mf
~ 6 kb mf
D
Figure 3. A-C) Analysis by Northern blot of total cellular RNA (5 mg) from wild type N. meningitidis H355 (lane1) and aceE::Kmr
(E1p-, lane 2), aceF::Kmr (E2p-, lane 3), and lpdA::Kmr (P64k-, lane 4) mutants; using aceE- (Panel A), aceF- (Panel B) or lpdA-
specific (Panel C) probes. D) Proposed transcriptional organization of the meningococcal PDC gene cluster.
All these results are coherent with the model for measured in cleared lysates from wild type and P64k-
the transcriptional organization of the meningococcal (lpdA) neisserial strains as described in the experi-
PDC gene cluster presented in Figure 3. mental procedures (Figure 4). As implied previously
by the capacity of exogenous acetate but not of succi-
Complementation assays nate to restore growth to the neisserial mutants in
Disruption of PDC or OGDC activity results in the MDCA-glucose, disruption of lpdA completely elimi- 18. Nazábal C, Carmenate T, Cruz S,
González S, Silva R, Musacchio A et al.
disruption of the tricarboxylic acid cycle (TCA), which nates PDC activity without affecting OGDC, con- Mapping of monoclonal antibodies spe-
is lethal under aerobic growth using glucose as the carbon firming that P64k is not involved in the catalysis of cific to P64k: A common antigen of several
isolates of Neisseria meningitidis. Canadian
source unless acetyl-Coenzyme A (AcCoA) or succinyl the later complex. Total LipDH activity levels dropped Journal of Microbiology 2001;47:158-64.
CoA are fed to the cycle by adding acetate or succinate to to approximately 50% of the wild-type levels, since
the growth medium, and their conversion by the acetate other cellular dihydrolipoamide dehydrogenases are 19. Erwin AL, Stephens DS. Identification
and characterization of auxotrophs of
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J, Veeger C. The pyruvate-dehydrogenase
presence or absence of 2 mM acetate and succinate. genes coding for the E1p, E2p and P64k polypep- complex from Azotobacter vinelandii . Eur
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aceE, aceF or lpdA genes impairs growth in the ab-
sence of acetate, but not of succinate. This suggests Table 1. Sensitivity of meningococcal E1p- (aceE), E2p- (aceF) or P64k- (lpdA) mutants
that these genes are indeed the components of the to the absence of acetate or succinate during growth in MDCA-glucose plates. The figures
neisserial PDC, and that P64k (the putative E3 com- shown are the average from 3 independent experiments, and represent colony-forming units.
ponent) is not shared with the α-oxoglutarate dehy- Ac: 2 mM acetate, Succ: 2 mM succinate.
drogenase complex (OGDC). Supplements
Strains None Ac Succ Ac + Succ
Assays for pyruvate-, α-oxoglutarate- and wild-type 153 97 125 102
dihydrolipoamide dehydrogenase activity E1p- 0 28 0 35
In order to corroborate the findings of the previous E2p- 0 30 0 19
experiments, PDC, OGDC and LipDH activities were P64k- 0 51 0 67
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