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Process Biochemistry 51 (2016) 759764

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Process Biochemistry
journal homepage: www.elsevier.com/locate/procbio

Agarose hydrolysis by two-stage enzymatic process and bioethanol


production from the hydrolysate
Young Bin Seo a,1 , Juyi Park a , In Young Huh a , Soon-Kwang Hong b , Yong Keun Chang a,
a
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Republic of Korea
b
Division of Bioscience and Bioinformatics, Myung-Ji University, Yongin 449-728, Republic of Korea

a r t i c l e i n f o a b s t r a c t

Article history: A two-stage enzymatic process was developed for agarose hydrolysis without acid pretreatment. In the
Received 8 September 2015 rst stage, agarose was hydrolyzed to produce neoagarobiose using an optimized dosage of AgaG1 and
Received in revised form 12 March 2016 DagB at pH 7.0 and 40 C. Agarose gelation was avoided by momentarily elevating the reaction tem-
Accepted 14 March 2016
perature for the rst 10 min, instead of employing a pretreatment step with acid prior to the enzyme
Available online 17 March 2016
reaction. In the second stage, neoagarobiose was further hydrolyzed to produce galactose using neoa-
garobiose hydrolase (NABH) at pH 7.0 and 35 C. The overall yield of galactose from agarose was 88%
Keywords:
of the theoretical maximum. The crude galactose solution produced from agarose hydrolysis was used
Agarose
Enzymatic hydrolysis
directly for ethanol production by yeast to demonstrate its potential. In overall, 20 g/l of agarose could
Galactose be converted to 3.71 g/l of ethanol.
Bioethanol 2016 Elsevier Ltd. All rights reserved.

1. Introduction process does not produce 5-HMF and LA, and leaves 3,6-anhydro-l-
galactose intact. The resulting crude galactose solution, containing
Ethanol can be produced by fermentation from various types no toxic compounds, can be used directly to produce ethanol by
of biomass including starch, lignocelluloses, and marine algae fermentation.
biomass. The bioethanol produced from marine algae has several Enzymatic hydrolysis of agarose is known to include three steps,
advantages over that based on starch and lignocellulosic biomass. It in principle: (1) agarose liquefaction by -agarase I to neoagaro-
does not compete with human foods, does not cause forest denuda- oligosaccharides; (2) neoagaro-oligosaccharides degradation by
tion, has a low content of lignocellulose, and can x a larger amount -agarase II to neoagaoriobiose; and (3) neoagarobiose decom-
of CO2 per unit mass [1,2]. position by -neoagarobiose hydrolase (NABH) to galactose and
The main constituent of red algae, one of the marine algae anhydrogalactose [7].
biomass, is agarose. Agarose is a linear chain of alternating In a series of efforts by our research group to search for
residues of 3-O-linked -d-galactopyranose and 4-O-linked 3,6- enzymes needed for agarose degradation, the rst involved AgaG1,
anhydro--l-galactose [3]. Agarose can be hydrolyzed chemically screened from Alteromonas sp. GNUM1. This enzyme is an endo-
or enzymatically. During chemical hydrolysis, galactose from the type -agarase, which hydrolyzes agarose to neoagarobiose and
galactosyl residue is retained, while the anhydrogalactose formed neoagarotetroase. It was expressed in Escherichia coli BL21 [810].
is further converted to 5-hydrooxymethyl furfural (5-HMF) and The second enzyme, DagB, an exo-type -agarase which hydrolyzes
then to levulinic acid (LA), both of which are known to be toxic agarose and neoagarotetraose to neoagarobiose, was screened
to many microorganisms including yeast to lower fermentation from S. coelicolor A3(2) and expressed in S. lividans TK24 [11].
efciency [4,5]. Therefore, the resulting crude galactose solution Finally, a newly screened microbial strain of Alcanivorax sp. A28-3
could be used as the medium for ethanol production only after (KCTC12788BP) was found to produce NABH, although its amino
a pretreatment step, for example, by nanoltration and electro- acid sequence is yet to be identied. When neoagarobiose was
dialysis for their removal [6]. In contrast, an enzymatic hydrolysis treated with the cell lysate of Alcanivorax sp. A28-3, galactose and
anhydrogalactose were produced as the nal products [12].
In this study, a two-stage process for the saccharication of
agarose to galactose and anhydrogalactose was developed and opti-
Corresponding author.
mized. In the rst step, agarose was degraded to neoagarobiose
E-mail address: ychang@kaist.ac.kr (Y.K. Chang).
1
Current address: SK innovation co., 325, Exporo, Yuseong-Gu, Daejeon 305-712,
using a mixture of AgaG1 and DagB, produced by a recombinant
Republic of Korea. E. coli and a recombinant S. lividans, respectively. In the second step,

http://dx.doi.org/10.1016/j.procbio.2016.03.011
1359-5113/ 2016 Elsevier Ltd. All rights reserved.
760 Y.B. Seo et al. / Process Biochemistry 51 (2016) 759764

neoagarobiose was decomposed to galactose and anhydrogalactose of seed culture, 2% of the seed culture broth was inoculated into
using the cell lysate of Alcanivorax sp. A28-3. The resulting galactose 200 ml of ASW-YP medium. After 2 days of culture, the harvested
solution was used by Saccharomyces cerevisiae KL17 (KFCC11493P), cells were disrupted by using a homogenizer (Model 500, Fisher
a galactose-utilizing yeast strain newly screened by our group for scientic, USA) to recover NABH inside the cells. Cell debris was
ethanol production. removed by centrifugation for 20 min at 5000 g. The supernatant
was used for the hydrolysis of neoagarobiose.
2. Materials and methods

2.3. Two-stage hydrolysis of agarose


2.1. Strains and media

In the rst stage, 10 or 20 g/l of agarose (Lonza, Switzerland)


E. coli BL21 and pMoPac1 were used as the host and plas-
was hydrolyzed to neoagarobiose by using a mixture of AgaG1 and
mid for the expression of agaG1 gene, respectively [10]. E. coli
DagB, both of which had the same optimum condition of pH 7.0, and
BL21/pMoPac1-AgaG1 was grown on the Luria-Bertani (LB)
40 C [10,11]. The enzyme reaction was performed pH 7.0, 40 C,
medium containing 35 mg/l of chloramphenicol.
and 100 rpm for 12 h in an Erlenmeyer ask containing 100 ml of
S. lividans TK24, which was obtained from The John Innes Foun-
reaction mixture. Tris-HCl buffer at 50 mM was used. To avoid the
dation (United Kingdom) and pUWL201PW [13] were used as
problem of agarose gelation, the reaction was started at 46 C. The
the host and vector for the expression of DagB, respectively. The
temperature was lowered to 40 C after 10 min, when gelation was
S. lividans TK24/pUWL201PW-DagB culture was performed in a
no longer a problem. In the second stage, neoagarobiose produced
R2YE medium with no sucrose, containing per liter: 0.25 g K2 SO4 ,
in the rst stage was treated with the NABH solution at pH 7.0,
10.12 g MgCl2 6H2 O, 10 g glucose, 0.1 g casamino acids, 5 g yeast
35 C, and 100 rpm for 12 h in a ask containing 100 ml of reaction
extract, 10 ml of 0.5% K2 HPO4 , 80 ml of 3.68% CaCl2 2H2 O, 15 ml
mixture. Tris-HCl buffer was used.
of 20% l-proline, 100 ml of 5.73% N-tris(hydroxymethyl) methyl-2-
aminoethanesulfonic acid (TES; pH 7.2), and 2 ml of trace elements
solution [14]. For stable maintenance of the plasmid, 50 mg/l of 2.4. Ethanol production
thiostrepton was used [11].
Alcanivorax sp. A28-3 (KCTC12788BP) was used for the produc- S. cerevisiae KL17 (KFCC11493P) was used. It had been newly
tion of NABH. The strain was cultured in an articial sea water screened from the soil by our group, and exhibited efcient uptake
media (ASW-YP) containing per liter 6.1 g Trizma base (pH 7.2), of galactose to produce ethanol [15]. Seed culture was carried out
12.3 g MgSO4 , 0.74 g KCl, 0.13 g (NH4 )2 HPO4 , 17.5 g NaCl, 0.14 g in 10 ml of the YPG medium. The main culture was inoculated with
CaCl2 , 0.2 g yeast extract, 3.0 g bacto peptone, and 2.0 g agar. 2% seed culture broth. As required, 100 ml of YPG medium, YPEH
S. cerevisiae KL17 (KFCC11493P) was used for the production of medium, or YPGH (YPG media + 0.5% of 5-HMF) medium was used
ethanol, and was cultured in an YPG medium containing per liter: for the main culture. All the yeast cultures were carried out at 30 C
10 g yeast extract, 20 g peptone, and 10 g galactose, or in an YPEH and 200 rpm.
medium containing per liter: 10 g yeast extract and 20 g peptone,
and actual enzyme hydrolysate of agarose.
2.5. Analysis
2.2. Preparation of enzyme solutions
The agarase activity was measured by the dinitrosalicylic acid
2.2.1. AgaG1 (DNS) method as previously described [10]. One unit of enzyme
E. coli BL21/pMoPac1-AgaG1 culture was performed in bafed activity was dened for both AgaG1 and DagB as the amount
Erlenmeyer ask. Cells from the cell stock were used to inoculate of enzyme liberating 1 mole of reducing sugar per minute, at
10 ml of LB medium for the seed culture. The culture was performed pH 7.0 and 40 C. One unit of NABH activity was dened as the
at 37 C and 200 rpm. After overnight culture, 2% of the seed culture amount of enzyme liberating 1 mole of galactose per minute,
broth was inoculated into 200 ml of LB medium. When the culture at pH 7.0 and 35 C. Neoagarobiose and neoagarotetraose were
OD600 reached 1.2, the temperature was decreased to 18 C and quantied by using a high-performance liquid chromatograph
then AgaG1 expression was induced using 1.0 mM of IPTG. The cul- (HPLC) (Waters, USA), with an Asahipak NH2P-50 4E column
ture was performed for 8 h at 18 C after induction. The harvested (250 4.6 mm, Shodex, Japan) and an ELSD detector (Sedex 75,
cells were disrupted by using a homogenizer (Model 500, Fisher Sedere, France) under conditions described previously [16]. Galac-
scientic, USA) to recover AgaG1 inside the cells. Cell debris was tose and ethanol were quantied by using an YSI 2700 Select
removed by centrifugation for 20 min at 5000 g-force. The super- Biochemistry Analyzer (YSI, USA). The agarose conversion to
natant was used for the hydrolysis of agarose. neoagarobiose and neoagarobiose conversion to galactose, were
estimated from the amount of these two compounds produced by
2.2.2. DagB the reaction using the following conversion factors.
S. lividans TK24/pUWL201PW-DagB was grown in a bafed The amount of agarose converted to neoagarobiose:
Erlenmeyer ask. Cells from the cell stock were used to inoculate
10 ml of R2YE medium for the seed culture. The culture was per- agaroseconverted(g) = neoagarobioseproduced(g)/f biose/agarose
formed at 28 C and 200 rpm. After 2 days of seed culture, 2% of the (1)
seed culture broth was inoculated into 200 ml of R2YE medium.
After 2 days of culture, cells were removed by centrifugation for where fbiose/agarose = 1.06 (=324/306).
20 min at 5000 g. The supernatant was used for the hydrolysis of The amount of neoagarobiose converted to galactose:
neoagarotetraose.
neoagarobioseconverted(g) = galactoseproduced(g)/f galactose/biose
2.2.3. NABH
Alcanivorax sp. A28-3 was cultivated in an Erlenmeyer ask. (2)
Cells from the cell stock were used to inoculate 10 ml of ASW-
YP medium for the seed culture at 28 C and 200 rpm. After 1 day where fgalactose/biose = 0.56 (= 180/324).
Y.B. Seo et al. / Process Biochemistry 51 (2016) 759764 761

Fig. 1. Agarose degradation by AgaG1 or DagB for 9 h.

3. Results and discussion In determining the dosages of these two enzymes required for
complete hydrolysis of 10 g/l agarose to neoagarobiose in 12 h, it
3.1. Preparation of enzyme solutions was assumed for the convenience of analysis that agarose hydrol-
ysis occurred in the following sequence:
By cultivating E. coli BL21/pMoPac1-AgaG1, an intracellular Assumption (1) Neoagarotetraose is generated from agarose by
AgaG1 activity of 5.9 U/ml-broth was obtained. The cell lysate, AgaG1, and
prepared as described earlier, was concentrated about 10 fold by Assumption (2) DagB degraded neoagarotetraose to produce
ultraltration and then a required amount was used for each exper- neoagarobiose.
iment. From S. lividans TK24/pUWL201PW-DagB, an extracellular First, the kinetics of neoagarotetraose hydrolysis by DagB was
DagB activity of 0.75 U/ml was obtained. The cell-free broth was identied. The rate of neoagarotetraose hydrolysis was measured
ultra-ltered to concentrate the DagB, before being used for exper- for different concentrations of DagB (Fig. 2a). The neoagarote-
iments. By cultivating Alcanivorax sp. A28-3, an intracellular NABH traose degradation rate was observed to follow rst-order kinetics
activity of 0.025 U/ml-broth was obtained. The cell lysate, prepared (Fig. 2b) as represented by Eq. (3).
as described earlier, was concentrated about 20 fold before being
d[N4]/dt = f ([E])[N4] (3)
used for experiments.
where [N4] is concentration of neoagarotetraose, and f([E]) the rst-
order reaction rate coefcient as a function of DagB, [E].
The equation was integrated with [N4] = [N4]0 at t = 0 to give
3.2. Optimization of AgaG1 and DagB dosage for neoagarobiose
production ln[N4] = ln[N4]0 f ([E])t (4)

As mentioned earlier, the nal products of AgaG1 from agarose By plotting the experimental data, based on Eq. (4) (Fig. 2b), f([E])
hydrolysis were neoagarotetraose and neoagarobiose, while that was found to linearly dependent on DagB dosage as presented in
from DagB was neoagarobiose only [10,11]. Theoretically, agarose Fig. 2c and Eq. (5).
can be hydrolyzed to neoagarobiose only by DagB. However, the
f ([E]) = 0.021 + 2.02[E](hr1 ) (5)
main problem with DagB is that it (an exo-type enzyme) is not ef-
cient in degrading oligomers because it attacks only one end of the In the previous work, 10 g/l of agarose was completely degraded
chain. On the other hand, AgaG1 (an endo-type enzyme) was found by AgaG1 to 3.8 g/l and 6.4 g/l of neoagarobiose and neoagarote-
more efcient than DagB in attacking oligomers larger than neoa- traose, respectively [10]. This meant that 6.4 g/l of neoagarotetraose
garotetraose at the same dosage, as shown in Fig. 1. For this reason, needed to be hydrolyzed by DagB when dealing with 10 g/l agarose.
the use of a mixture of these two enzymes was considered an ef- Using Eq. (4) and (5), the required DagB dosage for the complete
cient way to produce neoagarobiose from agarose and at the same hydrolysis of 6.4 g/l neoagarotetraose in 12 h was calculated to be
time, to minimize the dosage of DagB, which is very expensive to 0.133 U/ml.
produce. In such systems, the main contribution of AgaG1would Second, different dosages of AgaG1, along with 0.133 U/ml of
be the conversion of agarose to neoagarotetraose, which would DagB, were applied to degrade 10 g/l of agarose to the nal product,
be subsequently degraded to neoagarobiose by DagB. Fortunately, neoagarobiose. As shown in Fig. 3, the neoagarobiose production
such simultaneous usage of these enzymes was possible because rate increased monotonically as the AgaG1 dosage increased (in
both of them were found to have the same optimum conditions the range tested: 0.3751.500 U/ml). However, the dosage effect
(pH 7.0 and 40 C) [10,11]. was negligible at > 1.250 U/ml. When the AgaG1 dosage was 1.25
762 Y.B. Seo et al. / Process Biochemistry 51 (2016) 759764

Table 1
Neoagarobiose and neoagarotetraose formation from agarose hydrolysis by DagB and AgaG1.

AgaG1 dosage (U/ml) DagB dosage (U/ml) Reaction time (h) Neoagarobiose produced (g/l) Neoagarotetraose produced (g/l)

0.375 0.133 12 9.56 0.25 0.58 0.05


0.625 0.133 12 9.84 0.02 0.30 0.02
0.875 0.133 12 9.97 0.03 0.12 0.00
1.250 0.133 9 10.02 0.02 0.12 0.02
1.500 0.133 9 10.05 0.00 0.16 0.02

or 1.50 U/ml, the agarose hydrolysis was nearly complete in 9 h. In this study, after the NABH treatment a galactose yield of
With 0.875 U/ml of AgaG1, the reaction ended at 12 h, whereas 88% was obtained, which was signicantly higher than that (79%)
with 0.375 U/ml and 0.625 U/ml of AgaG1, the reaction was not reported by the group using acid pretreatment [18]. In addition,
completed in 12 h. This was clear from a noticeable amount of neoa- they calculated the yield based on the data obtained by the DNS
garotetraose remaining in the reaction mixture (Table 1). Unless method only, with no actual measurement of the galactose con-
otherwise mentioned, 0.875 U/ml of AgaG1 and 0.133 U/ml of DagB centration. This carried a high probability of overestimation.
were used in the subsequent experiments.

3.3. Two-stage process of enzymatic hydrolysis of agarose 3.4. Ethanol production

In the rst stage, 0.875 U/ml AgaG1 and 0.133 U/ml DagB were For the preparation of agarose hydrolysate for ethanol produc-
used for the hydrolysis of 10 g/l agarose, at pH 7.0 and 40 C for tion, a higher concentration of agarose (20 g/l) was used to obtain
12 h. In the second stage, NABH was used for the degradation of a more concentrated galactose solution than before with 10.0 g/l
neoagarobiose to galactose and anhydrogalactose, under the opti- galactose. Other than galactose, the other required nutrients (such
mum conditions of pH 7.0 and 35 C [12]. Fig. 4 shows the time as yeast extract) were added to the enzyme hydrolysate of agarose
proles of galactose, neoagarobiose, and neoagarotetraose during to make YPEH medium for ethanol production by S. cerevisiae
the rst stage, when 9.7 g/l of neoagarobiose was produced from KL17. The galactose concentration in the YPEH medium (9.2 g/l)
10 g/l agarose. This indicated that 92% of the agarose added was was slightly lower than that of the original agarose hydrolysate
converted to neoagarobiose. In the second stage, the galactose con- solution (10.0 g/l) due to the dilution caused by the nutrient sup-
centration increased monotonically with reaction time, and its nal plementation step. For the purpose of comparison, a synthetic
concentration at 12 h was 5.2 g/l. This corresponded to 88% of the galactose medium containing 10.0 g/l galactose (YPG) and YPG con-
galactose yield from agarose. taining 5 g/l 5-HMF (YPGH) were also tested for ethanol production.
In the two-stage enzymatic process, the most critical step was As shown in Fig. 5, the galactose consumption rate and ethanol
the rst stage of agarose liquefaction (primarily done by AgaG1), production rate in the YPEH medium showed patterns similar to
lowering the viscosity or gelation tendency of the agarose solu- those of the YPG medium, but showed a pattern of high inhibition
tion. It was reported that an increase in the solution viscosity in the YPGH medium. For the YPG medium, 9.75 g/l of galactose
caused decreasing enzyme activity due to decreased motion of was consumed in 12 h to produce 3.85 g/l of ethanol, providing
the enzymes in solution [17]. To avoid gelation or high-viscosity an ethanol yield of 0.39 (g/g) (77% of theoretical yield). When
problems, Kim et al. proposed an agarose pretreatment method the YPEH medium was used, 8.76 g/l of galactose was completely
with mild acid (e.g., acetic acid) to degrade agarose partially metabolized to produce 3.71 g/l of ethanol with an ethanol yield
before enzymatic hydrolysis [18]. However, it is known that acids of 0.42 (g/g) (83% of theoretical yield). As an example, yeast cul-
cleave agarose bonds randomly [19], generating products which ture was performed using the crude galactose solution produced
-agarases cannot recognize, and which could cause a signicant by the two-stage enzymatic process, to demonstrate its usability as
decrease in yield. Moreover, the use of acid entails a neutralization a carbon source for the fermentation processes. As shown in Fig. 5,
step to adjust the pH to the optimum level for the subsequent step the YPEH medium prepared from the crude galactose solution was
of enzymatic hydrolysis. Such neutralization generates a signicant found to offer a good environment for the growth of S. cerevisiae
amount of salts, which could potentially inhibit microbial activity KL17, and for ethanol production. In the YPEH medium, galactose
in the subsequent fermentation step. In this study, it was found was metabolized completely, and the ethanol yield was 83% of the
that enzymatic hydrolysis of agarose could be performed with no theoretical yield, while in YPG, a synthetic medium made from pure
acid pretreatment. Instead, the gelation problem was avoided by galactose, the yield was 77% of theoretical. The higher amount of
keeping the temperature at 45 C for 10 min at the very beginning ethanol produced with YPEH medium than YPG medium was con-
of the reaction in the rst stage considering the gelling tempera- sidered due to its complex nature. It was believed to contain, as
ture is known to be 4345 C. Then, the temperature was lowered originated from a crude hydrolysate solution, various unidentied
and maintained at 40 C for the rest of the reaction. It was expected materials that might have been utilized by the yeast as carbon
that agarose molecules were randomly cleaved mainly by the action source in addition to galactose. The possibility that the existence
of AgaG1 with a rapid decrease in the viscosity and thus gelation of anhydrogalactose in the YPEH medium could have positively
tendency during the 10-min period of operation at 45 C [10]. In contributed to ethanol production was slim because S. cerevisiae
other words, the gelation problem could be avoided at the cost of is known to be unable to metabolize anhydrogalactose [7].
briey sacricing enzyme activity, which was expected to cause no Both galactose consumption and ethanol production signi-
signicant loss in the overall efciency of the process. In fact, the cantly declined in YPGH medium due to the toxic effects of 5-HMF,
AgaG1 activity was only about 5% less than that at the optimum one of the major toxic byproducts from the chemical hydrolysis
temperature of 40 C. Moreover, operation at 45 C for a period as of agarose (Fig. 5). For this reason, the chemical hydrolysate of
short as 10 min was expected to result in no signicant perma- agarose needed to undergo a detoxication step before being used
nent deactivation of AgaG1. It was found in the previous study that for ethanol fermentation [6], while enzyme hydrolysate containing
AgaG1 activity could recover to about 95% of its original level after no inhibitory byproducts, and could be used directly, as done in this
exposure to 45 C for 10 min [10]. study.
Y.B. Seo et al. / Process Biochemistry 51 (2016) 759764 763

Fig. 3. Effect of AgaG1 dosage on neoagarobiose formation from agarose at pH 7.0


and 40 C at a xed DagB dosage of 0.133 U/ml.

Fig. 4. Two-stage enzymatic hydrolysis of agarose: In the rst stage, 10 g/l of agarose
was hydrolyzed to neoagarobiose by using AgaG1 and DagB mixture at pH 7.0 and
40 C. In the second stage, neoagarobiose was hydrolyzed to galactose by using NABH
at pH 7.0 and 35 C.

Fig. 2. Effect of DagB dosage on neoagarotetraose degradation rate at pH 7.0 and


40 C. (a) neoagarotetraose concentration proles (b) semi-log plot of neoagarote-
traose concentration proles (c) dependency of reaction rate coefcient on DagB
dosage.

Galactose has several applications. The ongoing and most


important one is for the synthesis of d-tagatose, a low-calorie
sweetener [20]. Galactose is also used for the synthesis of isopropyl
-d-1-thiogalactopyranoside also [21]. As mentioned earlier, anhy-
drogalactose is formed together with galactose during enzymatic Fig. 5. Ethanol production by Saccharomyces cerevisiae KL17. YPG: medium contain-
hydrolysis. Unfortunately, there have been no reports of anhy- ing synthetic galactose (control), YPEH: medium based on enzymatic hydrolysate,
YPGH: medium containing galactose and 5-HMF.
drogalactose utilization by microorganisms, although indirect
764 Y.B. Seo et al. / Process Biochemistry 51 (2016) 759764

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nanoltration and electrodialysis, Bioresour. Technol. 140 (2013) 6472.
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