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ORIGINAL ARTICLE
Keywords Abstract
aspen sawdust, Dekkera bruxellensis,
Lignocellulosic hydrolysate, Saccharomyces Aim: Testing the ability of the alternative ethanol production yeast Dekkera
cerevisiae. bruxellensis to produce ethanol from lignocellulose hydrolysate and comparing
it to Saccharomyces cerevisiae.
Correspondence Methods and Results: Industrial isolates of D. bruxellensis and S. cerevisiae were
Johanna Blomqvist, Department of
cultivated in small-scale batch fermentations of enzymatically hydrolysed steam
Microbiology, Uppsala Biocenter, Swedish
University of Agricultural Sciences, Box 7025,
exploded aspen sawdust. Different dilutions of hydrolysate were tested. None
750 07 Uppsala, Sweden. of the yeasts grew in undiluted or 1 : 2 diluted hydrolysate [final glucose con-
E-mail: johanna.blomqvist@slu.se centration always adjusted to 40 g l)1 (022 mol l)1)]. This was most likely due
to the presence of inhibitors such as acetate or furfural. In 1 : 5 hydrolysate,
2010 2015: received 9 November 2010, S. cerevisiae grew, but not D. bruxellensis, and in 1 : 10 hydrolysate, both yeasts
revised 6 April 2011 and accepted 16 April grew. An external vitamin source (e.g. yeast extract) was essential for growth of
2011
D. bruxellensis in this lignocellulosic hydrolysate and strongly stimulated
doi:10.1111/j.1472-765X.2011.03067.x
S. cerevisiae growth and ethanol production. Ethanol yields of 042 001 g etha-
nol (g glucose))1 were observed for both yeasts in 1 : 10 hydrolysate. In small-
scale continuous cultures with cell recirculation, with a gradual increase in the
hydrolysate concentration, D. bruxellensis was able to grow in 1 : 5 hydrolysate.
In bioreactor experiments with cell recirculation, hydrolysate contents were
increased up to 1 : 2 hydrolysate, without significant losses in ethanol yields for
both yeasts and only slight differences in viable cell counts, indicating an ability
of both yeasts to adapt to toxic compounds in the hydrolysate.
Conclusions: Dekkera bruxellensis and S. cerevisiae have a similar potential to
ferment lignocellulose hydrolysate to ethanol and to adapt to fermentation
inhibitors in the hydrolysate.
Significance and Impact of the study: This is the first study investigating the
potential of D. bruxellensis to ferment lignocellulosic hydrolysate. Its high com-
petitiveness in industrial fermentations makes D. bruxellensis an interesting
alternative for ethanol production from those substrates.
required to release the sugar monomers. Thermochemical SEAS dry matter (DM) content was estimated to 470%
pretreatment breaks up the recalcitrant structure of ligno- (w w) using Moisture Analyzer XM 60 (triplicates, at
cellulose, making the polysaccharides accessible to 105C for >30 min; Precisa Instruments AG, Zurich,
enzymes (Alvira et al. 2010). However, the pretreatment Switzerland). Portions of 128 g SEAS (60 g DM) were
also releases compounds that are toxic to the fermenta- pasteurized 1015 min in a boiling water bath.
tion yeasts, for instance furfural, hydroxymethyl furfural Accellerase 1000 enzyme solution (Genencor, A
(HMF), acetic acid and phenolic compounds. Acetic acid Danisco Division, Palo Alto, CA, USA; 2707 CMC
originates from the acetyl groups on hemicellulose, furfu- units g)1, 431 pNPG units g)1 solution) was centrifuged
ral from degradation of pentoses and HMF from glucose 20 min at 6000 g and filtered through a 02 lm syringe
and phenolic compounds from lignin (Alvira et al. 2010). filter (polyether sulfone; FiltroPur S, Sarstedt AG, Ger-
The classical fermentation yeast Saccharomyces cerevisiae is many). Enzymatic hydrolysis was carried out in two par-
usually regarded most appropriate for ethanol production allels at 40C in sodium citrate buffer, pH 50
from lignocellulose, especially when genetically engineered (33 mmol l)1 final concentration) in 28 l side-baffled
to ferment pentoses (Bettiga et al. 2009). However, we Fernbach flasks (Bellco Glass Inc., Vineland, NJ, USA) at
have discovered that Dekkera bruxellensis outcompeted 90 rev min)1, in fed-batch mode: Day 1: One portion of
S. cerevisiae in a starch-based industrial fermentation with SEAS (60 g DM, see above) was dissolved in 700 ml dis-
cell recirculation (Passoth et al. 2007). The industrial iso- tilled water. The SEAS storage bottle was rinsed with
late was very robust to changes in pH and temperature additionally 50 ml water, which was also added to the
and had an equal or higher ethanol yield compared with flask. To this hydrolysate suspension, 50 ml 1 mol l)1
industrial S. cerevisiae strains (Blomqvist et al. 2010). This sodium citrate buffer, pH 50 and 15 ml enzyme solution
together with the tolerance of D. bruxellensis to high were added. At day 2, one more SEAS portion was added,
numbers of lactic acid bacteria and the ability to ferment including 50 ml water for rinsing the storage bottle. This
cellobiose (Passoth et al. 2007; Blomqvist et al. 2010) procedure was repeated at days 3, 4 and 5. Finally, 300 g
makes this yeast interesting for the fermentation of ligno- DM SEAS had been added to each flask and the final bio-
cellulose, which has not been investigated before. To test mass content was 193% and 199% DM (w w), respec-
the ability of D. bruxellensis to ferment such a substrate, tively. Additionally, 15 ml enzyme was added at day 4
ethanol production from steam exploded enzymatically (final dosage 01 ml enzyme g)1 DM SEAS). At day 8, the
hydrolysed aspen sawdust was investigated and compared contents were centrifuged 30 min at 16 300 g and super-
with S. cerevisiae fermentations. natants were pooled together and sterile filtered (02 lm
Filtropur BT50; Sarstedt AG, Germany). One millilitre
samples taken on days 1, 2, 3, 4, 5, 8 were centrifuged at
Materials and methods
13 000 g, filtered (VectaSpin Micro Anopore 02 lm;
Whatman Inc., Piscataway, NJ, USA) and stored at
Strains and culture media
)20C before carbohydrate analysis by HPAE-PAD.
Yeast strains: D. bruxellensis CBS 11269 and S. cerevisiae
J672 (both isolated from industrial ethanol production
Batch cultivations with different dilutions of hydrolysate
(Blomqvist et al. 2010)). Glucose medium was prepared
according to Blomqvist et al. 2010 with the modifications: Precultures were generated as described (Blomqvist et al.
KH2HPO4 689 mmol l)1 and (NH4)2HPO4 201 mmol l)1. 2010). From the precultures, cells were resuspended in
Hydrolysate glucose medium (HGM) contained 1, 1 : 2, 1 ml of the HGM and inocultated to an OD600 10 into
1 : 5 or 1 : 10 volume of the liquid phase of aspen sawdust 20 ml serum vials (Pharmapack Packaging System, Soder-
hydrolysate (HGM, 05HGM, 02HGM, 01HGM, respec- talje, Sweden) containing 9 ml of HGM, 05HGM,
tively), (NH4)2SO4, 151 mmol l)1, and yeast extract, 02HGM or 01HGM with or without supplementing
5 g l)1, if not otherwise stated. Glucose was added to the yeast extract reaching a final volume of 10 ml. The vials
different dilutions of HGM to reach the same final concen- were closed with a rubber stopper to ensure oxygen limi-
tration of 40 g l)1 (022 mol l)1). tation. In the case without supplementation of yeast
extract, 65 g l)1 yeast nitrogen base (YNB, Difco; Bec-
ton Dickinson & Co., Franklin Lakes, NJ, USA) was
Preparation of hydrolysate
added at the end of fermentation (see Results). The vials
Steam exploded aspen sawdust (SEAS) was prepared at were incubated on a rotary table (30C, 140 rev min)1).
220C, 10 min, in a unit constructed by Cambi A S, Growth was monitored twice per day by OD600-measure-
Norway at the Norwegian University of Life Sciences, As, ments and samples were taken out for HPLC analysis at
and stored aseptically at 8C for 24 weeks before use. beginning and at end of experiment.
05HGM. As in the micro-titre plate experiments, glucose Dekkera bruxellensis had a high ability to adapt to the
concentration was 0. In 01HGM, the VC was harsh conditions in the hydrolysate. When the hydroly-
47 108(3 107) CFU ml)1 for D. bruxellensis and sate concentration was gradually increased, no decrease in
about 13 108(4 107) CFU ml)1 for S. cerevisiae, cell survival and ethanol yield was observed, even at con-
which was lower compared with the micro-titre plate centrations where the cells failed to grow in batch cultiva-
assays. The ethanol yield during growth in 01HGM was tion. In those fermentations, the performance of
035 001 g ethanol (g glucose))1 for D. bruxellensis and D. bruxellensis was comparable to that of S. cerevisiae.
038 001 g ethanol (g glucose))1 for S. cerevisiae. Sur- The ability of rapid adaptation to harsh conditions is an
prisingly, when increasing the hydrolysate concentration, interesting feature for future applications. A strain CBS
neither ethanol yield nor viable cell count were affected. 11270, isolated 1 year later than 12269 from the same
industrial ethanol plant, showed improved ethanol pro-
duction parameters (Blomqvist et al. 2010). Thus, our
Discussion
results suggest that it may be possible to obtain improved
We have compared for the first time the ethanol produc- D. bruxellensis strains by laboratory evolution.
tion potential from lignocellulose of the alternative etha- S. cerevisiae had in this study slightly better performance
nol production yeast D. bruxellensis with that of for the production of ethanol, although D. bruxellensis
S. cerevisiae. For both yeasts, it was necessary to dilute the reached comparable values. In a running investigation, we
material to avoid inhibitory effects. In batch fermenta- found that this yeast can outcompete S. cerevisiae in
tions, D. bruxellensis failed to grow in 02HGM, in con- co-cultivation (unpublished results). This and its ability to
trast to S. cerevisiae, and vitamin addition was essential. cope with a high number of lactic acid bacteria in the
The results indicate high concentrations of inhibitors and fermentation (Passoth et al. 2007) make it an interesting
also a lack of growth factors in the hydrolysate, as yeast candidate for industrial ethanol production, as competi-
extract or YNB substantially improved growth of both tiveness against other microbes provides an important
yeasts. D. bruxellensis has an obligate demand for thia- advantage in the largely nonsterile industrial fermentations.
mine and biotin (van der Walt 1964). The positive effect This is probably even more important in lignocellulose
on S. cerevisiae indicates a general demand for complex processes, where nonfermentable sugars provide a niche for
nutrients when fermenting lignocellulose hydrolysates. eventual contaminants (Schell et al. 2004). Moreover,
The ethanol yield of D. bruxellensis CBS 11269 was simi- understanding the physiological basis of the adaptation to
lar or slightly lower than that of the tested S. cerevisiae the higher concentrations of hydrolysate will be highly
strain. In a recent investigation on glucose medium relevant for the development of strategies for strain
(Blomqvist et al. 2010), CBS 11269 had an about 10% improvements, both in S. cerevisiaebased and in D. brux-
higher ethanol yield than another industrial S. cerevisiae ellensis-based fermentations. Investigations of stability and
isolate and almost identical yields compared with S. cere- metabolic basis of the adaptations are currently in
visiae J672. progress.
Lower ethanol yields may be because of respiro-
fermentative metabolism in both yeasts. Although the
Acknowledgements
oxygen tension in the fermentor was 0, there was a
considerable head space in the vessel. As the cells were This study was financed by the research programme
glucose limited, respiration was probably not repressed, MicroDrivE (http://microdrive.slu.se). The generous con-
enabling utilization of the low oxygen amounts for tributions of the MicroDrivE industrial partners Cambi
respiration. It may also be interesting to note that in the A S (steam explosion) and Danisco-Genencor (gift of
mitochondrial genome of D. bruxellensis, indications for enzymes) are particularly acknowledged. We are grateful
the existence of complex I in the respiratory chain were to Violeta Sanchez Nogue, Applied Microbiology, Lund
discovered (Prochazka et al. 2010). This complex could University for the help of analysing the inhibitors.
be responsible for a higher affinity to oxygen, explaining
the slightly lower ethanol yields of D. bruxellensis. In the
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