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PII: S0141-8130(17)30250-7
DOI: http://dx.doi.org/doi:10.1016/j.ijbiomac.2017.06.062
Reference: BIOMAC 7742
Please cite this article as: Samiha Mhamdi, Intidhar Bkhairia, Rim Nasri, Tahar
Mechichi, Moncef Nasri, Alya Sellami Kamoun, Evaluation of the biotechnological
potential of a novel purified protease BS1 from Bacillus safensis S406 on the
chitin extraction and detergent formulation, International Journal of Biological
Macromoleculeshttp://dx.doi.org/10.1016/j.ijbiomac.2017.06.062
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Evaluation of the biotechnological potential of a novel purified protease BS1 from Bacillus safensis
S406 on the chitin extraction and detergent formulation
Samiha Mhamdi, Intidhar Bkhairia, Rim Nasri*, Tahar Mechichi, Moncef Nasri and Alya
Sellami Kamoun.
Highlights:
- Novel protease from Bacillus safensis S406 was purified (SB1) and characterized.
- BS1 with a molecular mass of 29 kDa
- Optimum pH and temperature values for activity were pH 10 and 60 °C, respectively.
- BS1 is a potential candidate for peptide synthesis and detergent formulations.
- BS1 was found to be effective in the deproteinization of shrimp waste.
Abstract
The aim of this study is the production of High-Added Value enzyme for Industrial Uses. An
extracellular alkaline stable protease BS1 was purified from a newly bacterium, Bacillus safensis
S406, isolated from the Sfax Solar Saltern. BS1 was purified by a process involving sulfate
d’ammonium sulfate precipitation, sephadex G-75, Mono-Q anion-exchange chromatography and
ultrafiltation. The enzyme has a molecular weight of 24 kDa and appeared as a single band on native-
PAGE. The optimum pH and temperature values of its proteolytic activity were pH 11.0 and 60 °C,
respectively. The enzyme was then tested for its potential applications in chitin extraction from
shrimp waste. A ration enzyme-protein of 10 allows to eliminate 93% of protein linked to the chitin
after 3 h hydrolysis at 45 °C. In addition FT-IR spectra of the extracted chitin display a series of
narrow absorption bands, typical of crystalline polysaccharide samples. Being very active in alkaline
pH, the potential application of BS1 in laundry formulation was investigated. High stability of BS1
activity in the presence of non-ionic surfactants and some commercial liquid and solid detergents,
was detected, suggesting its eventual use in detergent formulations.
1. Introduction
Proteases are a particularly important group of enzymes that account for 60% of the total
worldwide sales of industrial enzymes [1]. These enzymes have various industrial applications
including detergents [2], foods, pharmaceuticals and leathers [3]. The majority of commercial
proteases are produced by bacteria, especially Bacillus spp [4]. Among them, alkaline proteases are
1
particularly important because they are both stable and active at high pH solutions and in the
presence of surfactants and oxidizing agents [3, 5]. Their major application is in detergent industry,
where the pH of laundry detergents is generally in the range of 9.0–12.0. The performance of
detergent proteases is influenced by several factors such as the pH of washing solution, wash
temperature and detergent composition. Alkaline proteases from high yielding strains have been
extensively studied. However, bleach-stable enzymes are not generally available except for few
reports [6, 7].
Many alkaline proteases have been purified and characterized [8-11]. Subtilisin Carlsberg
produced by Bacillus licheniformis [10] and Subtilisin Novo produced by Bacillus amyloliquefaciens
[11] have been the enzymes of choice in detergent formulations. These enzymes showed maximum
activity at pH values between 8.0–10.0 [9].
Chitin and mainly its deacetylated form (chitosan) are biomolecules of a great potential (food
industry, pharmacy, cosmetics,…), due to their numerous biological activities as well as to their
biodegradability and biocompatibility [15].
In this study, we describe the isolation and identification of a new bacterial strain B. safensis
S406 with high protease activity and purification of new potent alkaline protease. The compatibility
of the purified enzyme with several laundry liquid and solid detergents, as well as its potential in
deproteinization of shrimp wastes to extract chitin, were also investigated.
Production of proteases by B. safensis S406 was carried out in medium containing (g/l):
chickpea 40, faba bean 30, NaCl 2.0, KH2PO4 1, K2HPO4 1, CaCl2, 0.1 and MgSO4 0.1, pH 8.0. Inocula
were routinely grown in Luria-Bertani (LB) broth medium composed of (g/l): peptone 10, yeast
extract 5, NaCl 5, pH 7.0 [16]. The Media were autoclaved at 120 °C for 20 min and the flasks were
incubated for 72 h at 30 °C with continuous shaking at 150 rpm. The culture medium was centrifuged
at 10,000 g for 35 min at 4 °C, and the cell-free supernatant was used as crude protease.
2
Protease activity was measured by the method described by Kembhavi et al. [17] using casein
as a substrate. One unit of protease activity was defined as the amount of enzyme required to
liberate 1µg of tyrosine per minute under the used experimental conditions. Protease activities
represent the mean of at least two determinations carried out in duplicate.
3
Zymography was performed in conjunction with SDS–PAGE according to the method described
by Garcia-Carreno et al. [19]. The sample was not heated before electrophoresis. After
electrophoresis, the gel was submerged in 100 mM glycine-NaOH buffer (pH 10.0) containing 2.5%
Triton X-100 for 30 min, with constant agitation to remove SDS. Triton X-100 was then removed by
washing the gel three times with 100 mM glycine–NaOH buffer (pH 10.0). The gel was then incubated
with 1% (w/v) casein in 100 mM glycine–NaOH buffer (pH 10.0) for 20 min at 50 °C. Finally, the gel
was stained with Coomassie brilliant blue R-250. The development of clear zone on the blue
background of the gel indicated the presence of protease activity.
Protein concentration was determined according to the method described by Bradford [20]
using bovine serum albumin as a standard. During the course of enzyme purification, protein content
was estimated by measuring the absorbance at 280 nm.
4
2.8.3. Optimum temperature and thermal stability of the protease
The protease activity was tested at different temperatures between 40 and 100 °C for 15 min
in 100 mM glycine–NaOH buffer, pH 11.0. Thermostability of the protease BS1 was examined by
incubating the enzyme for 48 h at different temperatures ranging from 40 °C to
80 °C in the absence or presence of 5 mM CaCl2. Aliquots were withdrawn at desired time intervals to
test the remaining activity under standard conditions. The non-heated enzyme was considered as
control (100%).
The effects of various enzyme inhibitors on the protease activity were studied using
phenylmethylsulfonyl fluoride (PMSF), ethylene-diamine-tetraacetic acid (EDTA), β- mercaptoethanol
and dithio-bis-nitrobenzoic acid (DTNB). The purified enzyme was pre-incubated with inhibitors for
30 min at 30 °C and then the remaining enzyme activity was determined at pH 10.0 and 55 °C using
casein as a substrate. The activity of the enzyme assayed in the absence of inhibitors was taken as
100%.
5
detergent), incubated under the same conditions, was taken as 100%. The solid detergents used
were Dixan (Henkel-Spain), Nadhif (Henkel-Alki-Tunisia), Ariel (Procter and Gamble, Switzerland),
New Det (Sodet, Tunisia) and OMO (Colgate–Palmolive, France). The endogenous enzymes contained
in the detergents were inactivated by heating the diluted solution for 1 h at 65 °C prior to the
addition of the purified enzyme. The liquid detergents used were: Lav+ (Best LAV, Tunisia), Textile
(Mc Bride, Belgique), Carrefour (Henkel-Alki, Tunisia) and Ariel (Procter and Gamble, Switzerland)
where PO and PR are protein concentrations (%) before and after hydrolysis respectively; while, O and
R represent the masses (g) of original sample and hydrolyzed residue on dry weight basis,
respectively.
Demineralization was carried out in HCl solution according to the method developed by
Madhavan and Nair [23]. Solid fractions obtained after BS1 protease hydrolysis were treated with 1.5
M HCl solution at a ratio of 1:10 (w/v) for 6 h at 25 °C under constant stirring (150 rpm). The chitin
products were filtered, using a vacuum pump, through four layers of gauze, washed to neutrality
with deionized water and then dried for 12 h at 60 °C. Demineralization efficiency was determined
from the ash content percentage in the chitin sample.
Infrared (IR) spectra of the extracted and commercial chitins were determined using a Fourier
transform (FT) spectrophotometer (Perkin Elmer®, Spectrum™ 100, Singapore) equipped with
attenuated total reflection (ATR) accessory containing a diamond/ZnSe crystal. An extra accessory
6
plate for powdered samples with a conic awl was used without need of previous sample preparation.
ATR-FTIR spectra were obtained in the 4000-600 cm-1 range at room temperature, using 10 scans and
4 cm-1 resolution.
The N-terminal sequence of the first 10 amino acid residues of the purified enzyme BS1 was
determined to be AQTVPYGIPQ (Fig. 2). As shown in Fig. 2, the N-terminal amino acid sequence
alignment analysis of protease BS1 showed 100% identity with Subtilisin from B. pumilus [24, 25],
whereas, it differs from the Subtilisin Carlsberg of B. subtilis [26] and Subtilisin DY of B. licheniformis
[27] by only one amino acid. However, there are 2 amino acid residues in the BS1 terminal sequence
7
that differ from Subtilisin NAT of B. subtilis, Natto [28] and Subtilisin E from B. subtilis [29]. Thus BS1
protease could be a subtilisin enzyme.
The pH stability profile reported in Fig. 3b shows that the protease was highly stable over a
wide pH range, maintaining 100% of its original activity at pH values from 7.0 to 11.0, whereas about
70% of its initial activity was last at pH 13.0.
The thermal stability profiles of the purified protease are reported in Fig. 4b. The half-life
times of BS1 in the absence of any additive were 30, 21, 15, 9, and 6 h at 40, 50, 60, 70, and 80 °C,
respectively. However, the addition of 5 mM of CaCl2 increased its thermostability (p<0.05).
Similarly, Ca2+ was reported to improve the activity and stability of many Bacillus proteases
[24]. In fact, serine-proteases are known to contain two calcium binding sites, and the removal of
Ca2+ from the strong binding site is associated with a significant decrease in thermal stability. The role
of Ca2+ could presumably be attributed to the stabilization of the activated form of the BS1 and the
preservation of its structure against autolysis.
8
In order to classify the BS1 protease, enzyme activity was measured in the presence of a
variety of enzyme inhibitors, such as chelating agent and specific group reagents (Table 2). The
enzyme was completely inhibited by the serine protease inhibitor (PMSF) indicating that the purified
BS1 enzyme is a serine-protease. Thiol reagent (DTNB) at 2 mM showed practically no influence on
the activity of the purified enzyme. Furthermore, EDTA
(5 mM), a metalloprotease inhibitor, inhibited the enzyme by 22.8% (p<0.05). Partial inhibition of
many serine enzymes by chelating agents has been reported [31, 35, 36] indicating the probable
interaction of ions on the stabilization or activation of conformational structure of enzymes.
The effects of different metal ions, at a concentration of 5 mM, on protease activity were
studied at 60 °C and pH 11.0. The results in Table 2 show that Zn2+ did not affect protease activity,
whereas Ca2+, Mn2+, Ba2+, Na+ and Mg2+ increased protease activity by 226, 163, 142, 132 and 123%,
respectively(p<0.05). However, Hg2+ decreased the protease activity by 29%. These results are quite
similar to those reported for alkaline serine-protease from B. licheniformis NH1 [31].
In addition to being pH and temperature stable, the purified enzyme has functional activity
and stability in the presence of saline conditions, making it effective for application using ground
water with a high salt content [38].
9
In addition, BS1 protease was little influenced by oxidizing agent, retaining 58.24 % of its initial
activity after incubation for 1 h at 30 °C in the presence of 5% H2O2, and 71% in the presence of 2%
sodium perborate. These are very important characteristics for the eventual use of the enzyme in
detergent formulations.
The data presented in Fig. 6a show that the alkaline protease BS1 was highly stable in all
tested solid laundry detergents when incubated at 30 and 40 °C retaining 100% of its initial activity.
However, the protease was found to be less stable at 50 °C, retaining between 70% (Dixan) and 90%
(Ariel) of the initial activity. Singh et al. [42] reported that the alkaline protease from Bacillus sp. SSR1
retained 37% of its initial activity after 1 h of incubation at 40 °C in the presence of Ariel detergent at
a concentration of 5 mg/ml.
The data presented in Fig. 6b show that the enzyme was also highly stable in the presence of
liquid detergents, retaining 100% of its activity after 1 h incubation at 30 and 40 °C. The enzyme was,
however, less stable at 50 °C than 30 and 40 °C; although it retained more than 85% of its initial
activity in the presence of all tested detergents. These results are consistent with those reported for
alkaline proteases from B. licheniformis MP1 [43] and B. mojavensis A21 [44] and provide further
support for the usefulness of this purified protease for future industrial application as a cleaning
bioadditive in detergent formulations [3].
Generally, solvents with log P values below 4.0 are considered to be extremely toxic because
their degrees of partitioning into the aqueous layer are high [45, 46]. However, BS1 protease showed
improved stability against a major part of the tested solvents, including hydrophilic solvents.
10
3.11. Chitin extraction
For efficient chitin extraction, associated proteins should be removed as a first stage. Many
reports have demonstrated the application of proteolytic enzymes for the deproteinization of marine
crustacean wastes to produce chitin [47, 48]. Deproteinization tests were conducted for 3 h at 45 °C
and pH 10.5. E/S ratios between 5 and 20 (U/mg of proteins) were assayed to compare the
deproteinization efficiency. As shown in Fig. 7a, the deproteinization rate of shrimp shells without
enzyme was 32%. Indeed, some proteins associated to chitin by electrostatic forces or hydrogen
bonds, could be dissociated by thermal treatment. The other proteins are probably linked to the
chitin by covalent bonds; their removal requires additional chemical or enzymatic treatment [49].
The addition of the purified alkaline protease BS1 improved the deproteinization rate. The DP rate
with E/S = 5 U/mg was 80%, the percentage of protein removal increased with increasing E/S ratio
and reached about 93% with E/S ratio of 10 U/mg. Further increase in enzyme concentration did not
increase significantly the deproteinization rate which reached 95% at E/S ratio of 20 U/mg.
The spectra of the extracted chitin display a series of narrow absorption bands, typical of
crystalline polysaccharide samples (Fig. 7b). In the FTIR spectra of BS1 chitin, two separate peaks
were observed at 1662 and 1618 cm−1 and were attributed to the occurrence of the intermolecular
hydrogen bond CO· · ·HN and the intramolecular hydrogen bond CO· · ·HOCH2, respectively. The
characteristic carbonyl C=O stretching of chitin at 1618 cm-1 is attributed to the vibrations of the
amide I band. The sharp bands at 1427 cm-1 and 1551 cm-1 correspond to a symmetrical deformation
of the CH3 group and N-H deformation of amide II, respectively, which is in agreement with the
results described by Al Sagheer et al. [50]. These bands can be seen clearly in the shrimp chitin
spectrum and the commercial chitin. An additional band observed at about 1378 cm−1 was assigned
to C–O stretching vibration region. Another characteristic marker is the CH deformation of the β-
glycosidic bond, was shown at 895 cm−1. A broad absorption band in the range 3437 cm-1 is attributed
to the OH stretching vibrations [51]. The band due to NH of the amide group observed at 3263 cm-
1
, is assigned to the vibrational modes involved in intermolecular hydrogen bond CO…HN groups.
Consequently, the BS1 chitin sample displayed an IR spectrum typical to that of the commercial
chitin.
Conclusion
The purification to homogeneity of alkaline protease BS1 was achieved by precipitation with
ammonium sulfate, gel filtration through Sephadex G-75, anion exchange chromatography and
ultrafiltration. The purified protease was homogenous on SDS-PAGE and its molecular mass was
estimated to be 29 kDa. The enzyme showed an optimum pH of 11.0 and optimum temperature at
11
60 °C. The protease showed stability in the presence of a wide range of organic solvents and
compatibility with a wide range of commercial solid and liquid detergents. Furthermore, BS1
protease was highly effective in the deproteinization of shrimp waste to extract chitin. These results
suggest that the B. safensis BS1 protease could be a potential candidate for several processing
operations, as a laundry detergents additive, or in the chitin extraction from shrimp wastes.
Acknowledgement
This work was funded by the Ministry of Higher Education and Scientific Research, Tunisia.
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Figure Caption
16
Figr-1Fig. 1
Fig. 2
Protease BS1 (B.safensis S406) A Q T V P Y G I P
Q
Subtilisin SAPB (B. pumilus CBS) CAO03040 A Q T V P Y G I P
Q
Subtilisin (B. pumilus) UN-31-C-42 A Q T V P Y G I P
Q
Subtilisin Carlsberg (B.subtilis) 1CSE_E GI:229772 A Q T V P Y G I P
L
Subtilisin DY (B. licheniformis) 1BH6_A GI:3891521 A Q T V P Y G I P
L
Subtilisin NAT (B.subtilis. Natto) 4DWW_A GI:380259250 A Q S V P Y G I S
Subtilisin E (B. subtilus) 3WHI_A GI:568786416 Q
Subtilisin BPN’ (B.amyloliquefaciens) 1SPB_S GI:1311236 A Q S V P Y G I S
Selenosubtilisin Bpn (B.amyloliquefaciens) 1UBN_A GI:5542495 Q
A Q S V P Y G V S
Q
X Q S V P Y G V S
Fig. 3
(a)
(b)
Relative protease activity (%)
Fig. 4
(a)
(b)
Fig.5
Fig. 5
Fig.6
(a) pH
(b)
Fig.7
(a)
17
(b)
Fig. 1. SDS–PAGE and zymography of the purified protease from B. safensis S406. Lane 1:
standard protein markers; lane 2: purified protease; lane 3:zymography of the cell free
Fig. 2. Alignment of the N-terminal amino acid sequence of the purified alkaline protease BS1
from B. safensis S406 with the sequences of other proteases. Residues not identical with BS1
protease are shaded. BS1 B. safensis S406 protease (present study); Subtilisin SAPB Subtilisin
(B. pumilus CBS) (Jaouadi et al., 2008); Carlsberg (B.subtilis 1CSE-E) (Phalen et al., 1985);
Subtilisin DY (B. licheniformis 1402) (Eschenburg et al., 1998); Subtilisin NAT (B. subtilis
(natto)) (Nakamura et al., 1992); Subtilisin E (B. subtilis 1SCJ-A) (Jain et al., 1998); Subtilisin
Fig. 3. Effect of pH on the activity (a) and stability (b) of the purified S406 protease. Protease
activity was evaluated in the pH range of 6.0–13.0 using buffers of different pH values at 60
°C. The maximum activity obtained at pH 11.0 was considered as 100%. The pH stability of
the purified enzyme was determined by incubating enzyme in different buffers for 1 h at
40 °C and the residual activity was measured at pH 11.0 and 60 °C. The activity of enzyme
before incubation was taken as 100%. Buffer solutions used for pH activity and stability are
presented in Section 2. Values are means of three independent experiments, deviations were ±
SD.
Fig. 4. Effect of temperature on the activity (a) and thermal stability (b) of the purified protease.
The temperature profile was determined by assaying protease activity at temperatures between
40 and 100 °C in the absence and presence of CaCl2 (5 mM). The activity of the purified enzyme
18
The temperature stability was determined by incubating the purified enzyme at different
temperatures for 48 h at pH 11.0, in the absence and presence of CaCl2 (5 mM). The residual
enzyme activity was estimated at regular intervals under standard conditions. The non-heated
Fig. 5. Effect of salinity on the activity and stability of the purified enzyme. For protease
activity, the enzyme was assayed in the presence of NaCl (0-60 %). For enzyme stability, it was
preincubated for 1 h at different NaCl concentrations, and the residual activity was measured
under standard assay conditions. The enzyme activity determined without NaCl was taken as a
control.
Fig. 6. Stability of the purified alkaline protease in some solid (a) and liquid (b) laundry
detergents. The purified protease was incubated 1 h at 40 °C in tap water containing 7 mg/ml
of solid detergents, and 1% (v/v) of various liquid laundry detergents. The remaining activity
were determined at pH 11.0 at 60 °C, using casein as a substrate. Enzyme activity of control
sample pre-incubated in the same conditions without any detergent was taken as 100%.
waste. Protein hydrolysis was performed for 3 h at 45 °C (a). FTIR spectra of commercial and
19
Table 1: Summary of the purification of BS1 protease from B. safensis S406
Total Specific
Total activity Recovery Purification
Purification steps protein activity (U/mg
(U) (%) (fold)
(mg) protein)
Culture
137050 43.8 3128.99 100 1
supernatant
(NH4)2SO4
precipitation 111695.75 11.88 9401.99 81.5 3.0
(20%-60%)
Sephadex G-75 59975 4.1 14628.04 43.76 4.67
Table 2: Effects of enzyme inhibitors and various metal ions on S406 protease activity.
20
5 0 ± 0.00
EDTA 2 93 ± 1.54
5 74 ± 1.75
Cu2+ 5 97 ± 1.71
Hg2+ 5 71 ± 2.33
K+ 5 104 ± 3.26
The purified enzyme was preincubated with various enzyme inhibitors for 30 min at 30 °C, and the
remaining activity was determined at pH 11.0 and 60 °C. Enzyme activity measured in the absence
of any inhibitor was taken as 100%. The effects of metal ions on the activity of the protease
were determined by incubating the enzyme in the presence of various metal ions for 15 min at
60 °C and pH 11.0.
Table 3: Stability of the purified alkaline protease in the presence of various surfactants and
oxidizing agents.
21
0.5 51.01 ± 1.26
1 34.45 ± 2.04
5 109 ± 2.48
5 102.5 ± 1.33
5 115 ± 2.73
5 58.24 ± 3.14
2 71 ± 2.62
The enzyme was incubated with different surfactants and oxidizing agents for 1 h at 30 °C and the
remaining activity was measured under standard conditions.
None ─ 100
22
Methanol - 0.76 10.23 ± 2.17
23