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Editorial board: Finally, “Burch Gene” magazine saw the daylight. Our goal
Prof. Dr. Damir Marjanović was to introduce students, professors and the public to the basic
Prof. Dr. Mirsada Hukić ideas behind genetics and bioengineering. Introduce them with
Assist. Prof. Dr. Almir Badnjević definitions, concepts, applications and benefits these branches
Assist. Prof. Dr. Serkan Dogan of science provide to human kind. Also, to better understand
Assoc. Prof. Dr. Enisa Omanović science in general and to demystify some common myths we
can hear about, read in newspapers, watch on TV and similar.
Text authors:
Prof. Dr. Rifat Hadžiselimović In this very first edition, we will introduce you with his-
Prof. Dr. Damir Marjanović torical aspects and application of Mendelian and molec-
Assoc. Prof. Dr. Enisa Omanović ular genetics, biomedical engineering, forensics, nano-
Assist. Prof. Dr. Almir Badnjević technology, bioinformatics, neuroscience and many other
MS Elma Ferić-Bojić interesting topics. You will be able to read some interest-
Lejla Gurbeta ing facts about genetics and to introduce yourselves with
Adna Ašić common genetics’ diseases and ways they can be treated.
Larisa Bešić
Adnan Fojnica All the topics are written with simple style, affordable and
Dijana Sejdinović understandable for readers that are not so familiar with genet-
Anis Čilić ics from one side, in same time very comprehensive and edu-
Džana Mulaomerović cational for people that are dealing with genetics, bioengi-
Ahmed Osmanović neering and science in their everyday lives, from another side.
CONTENTS
4 MILESTONES OF GENETICS
The widespread thinking is that Gregor Mendel set basis for modern genetics.
However it was preceded by numerous, smaller or larger contributions to this science.
11 BIOMEDICAL ENGINEERING
In 2000, German archeologists uncovered a 3,000-year old mummy from Thebes
»» p.12 with a wooden prosthetic tied to its foot to serve as a big toe.
»» p.16
16 A LOVE STORY
Your brain is built of cells called neurons and glia – hundreds of billions of
them. And each of them contains the entire human genome.
22 A, C, G & T
A, C, G & T are ‘’letters’’ that write ‘’book of life’’ inside each of us. It took too long
for humans to decipher these ‘’letters’’.
»» p.7
24 A TRIP DOWN MEMORY LANE
When we are talking about molecular genetics we can surely say ideas that are
currently unimaginable are soon going to become history.
26 9 GREATEST DISCOVERIES
Here’s a look at some discoveries that have changed the world of genetics. It’s
impossible to rank their importance, so they’re listed in the order they were discovered.
»» p.22
MILESTONES
OF GENETICS
Rifat Hadžiselimović
DISCOVERIES AND EVENTS
From the origins of human cognition patterns on our planet, members of the human
race tend to evolve to surpass their predecessors. According to the earliest written ev-
idence, Homo sapiens tend to use the genetical potential of the interesting species, by using core
genetics forms, from which some were not explained untill the distant future and modern epoch.
It is widely known that Gregor Mendel (1822-1884) set the basis (1869.) for all fields of modern
genetic research. In the early 20th century, the science that he was involved with is referred to as
Mendelism, with the qualification “science of inheritance” ... However, as in all other areas of hu-
man knowledge, it was preceded by numerous, smaller or larger contributions to this science, which
originate from the deepest layers of civilization. Such areas have long been works of ingenious in-
dividuals amateurs who were not considered scientists, and nor did they fully grasp the science.
1. Early theories and interacted in the womb to direct an Hebrew - Judah ibn Tibbon.
applications organism’s early development. For In 1000 CE, the Arab physi-
both Hippocrates and Aristotle— cian, Abu al-Qasim al-Zahrawi
3000. CE - Targeted cross and nearly all Western scholars (known as Albucasis in the West)
breeding between domestic through to the late 19th century— was the first physician to describe
animals. the inheritance of acquired charac- clearly the hereditary nature of hae-
The Egyptians, Greeks and teristics was a supposedly well-es- mophilia in his Al-Tasrif.
Romans crossed horses with the tablished fact that any adequate VI century CE, - Heraclitus is
aim of “processing”. theory of heredity had to explain. the founder of the dialectical-ma-
Assyrians and Babylonians dis- At the same time, individual species terialist view of the world: ‘’ Panta
tinguished male and female tree were taken to have a fixed essence; Rei ‘(everything moves). Matter,
dates, and the number of males such that inherited changes were including wildlife, everywhere, is
were minimized in order to achieve merely superficial. constantly changing. It is a single
higher yields. In the 9th century CE, the Afro- concept - only manifests itself
The most influential early Arab writer Al-Jahiz considered the in various forms. There exists a
theories of heredity were that effects of the environment on the present struggle of opposites: of
of Hippocrates and Aristotle. likelihood of an animal to survive. living occurs life, but life can not
Hippocrates’ theory (possibly based In 1140 CE, Judah HaLevi exist without death; the origin does
on the teachings of Anaxagoras) described dominant and recessive not go without fail; light without
was similar to Darwin’s later ideas genetic traits in The Kuzari. “This darkness; beginning with no end.
on pangenesis, involving hered- phenomenon is well known in V Century CE - Empedocles
ity material that is collected from inheritance, because very often we suggested the four elements: water,
throughout the body. Aristotle sug- have a son who does not look like earth, air and fire - and culminates
gested instead that the (nonphys- his father, and instead looks like ancient materialism. His philos-
ical) form-giving principle of an his grandfather. Without a doubt, ophy is the forerunner of the sci-
organism was transmitted through inheritance and likeness were entific process. Interestingly,
semen (which he considered to be found within his father, though they Empedocles hypothesis sugests
a purified form of blood), and the were not visible from the outside.” that living organisms are formed by
mother’s menstrual blood, which assembling individual anatomical
GENETICS ON
CRIME SCENE Damir Marjanović, Adna Ašić, Larisa Bešić
FORENSIC GENETICS
genetics.
Forensic genetics is the sci-
entific area of genetics which is
concerned with the application
of the genetic findings in court,
legal procedures. It is important
to emphasize that forensic genet-
ics, i.e., its foundations, date from
before the first official use of foren-
sic DNA analysis in 1985. Before
DNA analysis, different genetic
systems, such as HLA (human leu-
kocyte antigen) analysis or ABO
blood groups analysis were widely
used, especially for the purpose of
paternity testing. Moreover, pater-
nity testing which was done using
comparative analysis of those
phenotypic characteristics whose
expression was, as it was thought
Figure 1 Connection of the forensic genetics with the other at that time, based on the variations
scientific fields. of the genetic markers, should not
be neglected. The science from
Half of the century after the rev- located on the specific positions in that time, at least on the level of
olutionary discovery of the molec- the human genome, which repeat its application, is hardly compara-
ular structure of DNA as an essen- in successive series. Also, he con- ble to its recent scope. However,
tial carrier of hereditary informa- firmed that the number of those some of the fundamental findings
tion, it has been promoted into the repetitive units can vary among that still represent the base of the
mostly mentioned and used organic the individuals in the examined modern forensic genetics were dis-
substance in a wide range of sci- population sample. By improving covered in that period.
entific disciplines (Marjanović et the methods of length variations Forensic genetics is based on
al, 2005a). One of the most com- analysis of these repetitive DNA the complex interaction of a huge
monly used methods of the analy- sequences, Jeffreys created the pos- number of scientific fields, such as
sis of individual regions of DNA is sibility to conduct massive human biology, biotechnology, genetics
forensic DNA testing, also known DNA testing. (especially population and molec-
as DNA fingerprinting or DNA That massiveness, as well as ular genetics), biochemistry, math-
typing, depending on the method very high level of applicability of ematics, biostatistics, medicine,
of analysis. the newest findings, which consid- technology, law, ethics, etc. (Figure
DNA typing has been scientifi- erably overcame the initial postu- 1).
cally promoted in forensics 20 years lates of DNA analysis, led to the Today, DNA analysis has an
ago in the papers of English geneti- development of the new scientific irreplaceable role in the foren-
cist Alec Jeffreys. He described the discipline which is still described sic science as a whole. In the last
existence of the DNA sequences, under its working title as forensic twenty years, this method was the
Almost every scientific discipline has its own heroes who substantially influenced
its further development. Forensic genetics is one of the rare scientific disciplines
in which even antiheroes had a significant impact through raising public awareness
about the necessity of DNA analysis and the need for the investment in this promising
tool. Therefore, any forensics text „worth reading“ should not avoid the following three cases: Colin
Pitchfork Case, O. J. Simpson Case and Bill Clinton Case. We are strongly recommending you to
read something about those stories. That will help you to recognize how exact application helped in
the shaping of the forensic genetics as one of the most applied scientific branch within 21st century.
main tool that clarified numerous principles are widely used in the in 1980, Alec Jeffreys (Figure 2)
forensic cases worldwide. There forensic genetics. showed that specific regions of
are several main areas of DNA Final demystification of the DNA (VNTR – variable number of
analysis application in forensic molecular structure of DNA which tandem repeats) contain repetitive
medicine: investigation of criminal was first shown by the Nobel Prize sequences which differ from person
activities, identification of persons, winners James Watson and Francis to person in 1984, and used them
and proving the parenthood. Crick in 1953 opened new hori- in the court for the first time a year
This method played a very zons in the molecular microcos- later. This discovery was crucial in
important role in the Balkans mos. Soon after that, Coenberg dis- solving the first forensic case that
thought the projects of the war covered and described DNA poly- used DNA analysis. After the assas-
victims identification, both in merase in his papers (in 1958). sination of two girls, Lynda Mann
Bosnia and Herzegovina (1992 Twenty years later, Botstein and and Dawn Ashworht, in 1983 and
- 1995) and in its closest neigh- his coworkers laid the founda- 1986, police organized the testing
borhood. Applying this powerful tions of the RFLP method (restric- of more than 5000 men and finally
“molecular weapon”, thousands tion fragment length polymor- found the murderer (Wambaugh,
of human remains were given phism) by describing the possi- 1989). However, the discovery of
their names back and their fami- bility of using restriction endo- PCR (polymerase chain reaction)
lies were at least given the oppor- nucleases, and also showing that procedure and its improvement
tunity to bury their loved ones in there are small variations in hered- during the 1980s (Mullis and col-
dignity. itary material which differ from leagues, Figure 2-a) significantly
The development of the scien- person to person. Finally, after influenced the future of DNA anal-
tific field such as forensic genet- Wyman and White described the ysis, both in clinical and forensic
ics is not exclusively conditioned existence of short, highly variable medicine. With the discovery of
by the events and changes within DNA markers for the first time this technology, it became possible
its field of interest. It is necessary
to consider all the events that hap-
pened prior to its establishment, as
well as everything that, originating
from the other scientific fields, had
either direct or indirect influence
on the streams within the forensic
genetics itself. The whole book,
and not to mention a single chapter
like this, would not be enough to
consider all the relevant facts, but,
however, few of them are worth to
be pointed out in this short review.
As it is well known, Mendel
formulated the basic principles
of the inheritance. Even though
his first results were published in
1865, they were completely for-
gotten until 1900, when the other
scientists (De Vries, Correns, and
Von Tschermak) confirmed them. a) b)
William Bateson (founder of the
terms “gene” and “genetics”) in Figure 2 The basis for the “dramatic” expansion of forensic genetics in the last three
1906, proved Mendel’s laws in his decades was set by two scientists who were not forensic experts; a) Kary Mullis who
experiments on animals. The foun- defined polymerase chain reaction and b) Sir Alec Jeffreys who performed the first
dation and universality of Mendel’s official DNA analysis whose results were verified in the court trial in 1980s.
to analyze the biological specimens biological relations between indi- the following 15 years. In 1993,
which contain minute amounts of viduals, as well as biological traces. the analysis of already mentioned
DNA. This method enabled the probabil- STR loci was introduced for the
These fundamental discoveries in ity of tested parentage to cross the first time. Two years later, the first
genetics dictated the trend of their limit of 99%. However, its appli- ABI 310 capillary genetic analyzer
application, which, in turn, con- cation was still extremely limited was officially produced, as well as
ditioned the development of the on the analysis of large biological TaqGold polymerase, which is still
forensic genetics itself. Scientists traces and was using an exception- the most commonly used enzyme
were aware of the blood group ally long procedure. in forensic DNA analysis. In this
inheritance system and the possi- Also, in the early 1990s, molecular period, the first multiplex STR
bility of its application in the deter- genetics techniques based on the systems were developed, which
mination of biological (genetic) application of PCR found its wide enable simultaneous analysis of
relations between human individ- application in the disputed parent- multiple STR loci (at the end of
uals for a long time. With the dis- age testing and in forensic DNA 2012, that number increased to the
covery of new serological tests analysis. The main advantage of simultaneous analysis of 18 loci in
for Rh, Kell, and Duffy blood this method is the ability to get the one reaction), as well as fast-PCR
group systems, and their simulta- billions of copies of the fragment thermocyclers and multi capil-
neous application with ABO test, of interest from very small biolog- lary genetic analyzers for simple
the power of exclusion has been ical traces, i.e., traces character- and simultaneous electrophore-
increased up to 40%. ized by the presence of extremely sis of multiple samples, which
In the early 1970s, the limits of the small amounts of DNA, using enables extremely fast processing
genetic testing were widened from successive and targeted copying of numerous samples. The shorten-
blood typing to tissue typing. The of DNA molecules. This analysis ing of the processing time became
molecular bases of this testing were was considerably improved with necessary in the laboratories
in the application of so-called HLA the two additional steps, intro- whose primary task was process-
(Human leukocyte antigen ) typing. duction Taq polymerase and STR ing the samples for the DNA data-
There are many HLA types which (short tandem repeats) molecular bases. Also, at the beginning of this
expressed a high level of individ- markers, which will be further dis- century, the expansion in the use
ual variation which is “geneti- cussed later on. Finally, the appli- of new markers, like SNPs (single
cally controlled” primarily by the cation of this method shifted the nucleotide polymorphisms), which
genetic complex located on the power of exclusion in the testing of are expected to enable the progress
sixth chromosome. Due to that, disputed parentage to the minimum of chip biotechnology and increase
they turned out to be a good tool of 99.999% and enabled the anal- the use of mitochondrial DNA and
in disputed parentage testing. The ysis of extremely small biological molecular markers related to the
power of exclusion was increased traces characterized by the pres- sex chromosomes, was recorded.
up to 80% with the application of ence of minute amounts of, usually Modification of the existing STR
HLA typing, and in combination highly degraded, DNA. genetic markers and the creation
with serological tests, that power In the end, there is a significant and of miniSTR concepts made it pos-
reached almost 90%. However, fast progress in the development sible to analyze extremely small
the application of this method has of basic biotechnological methods amounts of highly degraded DNA
some serious limitations because which enabled the forensic DNA which is often found in biolog-
the analysis requires processing analysis to cross the path from an ical traces. In the last few years,
large blood samples that cannot exclusive and complex procedure phenotypization (prediction of the
be older than few days, which rep- to the everyday routine procedure basic phenotypic characteristics of
resents a serious problem, espe- in only 20 years. Soon after the dis- the person who left certain biolog-
cially during the testing of infants closure of the famous PCR princi- ical trace based on the analysis of
in the first year of life. ple, at the beginning of 1986, the SNP markers) turned out to be very
Finally, in the middle 1980s, dis- first PCR thermocycler was con- interesting and it will be discussed
puted parentage testing and deter- structed. It was simulating all the in one of the following chapters.
mination of the origin of biologi- conditions necessary for perform- The development of forensic genet-
cal traces in forensic analyses by ing the phases of PCR method. In ics is truly dynamic and almost
processing the primary carrier of that same year, automatic sequenc- every month new product is offered
hereditary traits, i.e., DNA mol- ing was described for the first time, on the market to significantly sim-
ecule, has begun. Method used and company Applied Biosystems plify already existing procedures or
then, so-called RFLP analysis, introduced the first genetic ana- to give completely new solutions in
was giving the results signifi- lyzer – model 370A – on the the field of forensic DNA analysis.
cantly better than previous serolog- market. Six years later, the same
ical and HLA tests. It was shown company presented the first cap-
that the fragments of DNA mole- illary system, which will com-
cule are significantly more variable pletely repress genetic analyzers
than HLA complex, which made based on the classical vertical poly-
them ideal for the determination of acrylamide gel electrophoresis in
BIOMEDICAL
ENGINEERING Almir Badnjević, Lejla Gurbeta
HISTORY AND PERSPECTIVES
and comitment in improvement Biomedical Engineering – past
of quality of life, enforces the
support of technologically special- In its broadest sense, biomedi-
ized personnel, trained into solving cal engineering has been with us for
problems in medicine and health centuries, perhaps even thousands
– bioengineers. of years. In 2000, German arche-
ologists uncovered a 3,000-year-
Interdisciplinary is a bedrock of old mummy from Thebes with a
biomedical engineering, where wooden prosthetic tied to its foot
engineers contribute to the to serve as a big toe. Researchers
advancement of knowledge equally said the wear on the bottom surface
as medical professions. Biomedical suggests that it could be the oldest
engineering is, beside the sustain- known limb prosthesis. Egyptians
able and renewable energy sources, also used hollow reeds to look and
one of the most rapidly growing listen to the internal goings on of the
branches of industry in the devel- human anatomy. In 1816, modesty
oped world. The development of prevented French physician Rene
Figure 1 Biomedical engineering is a biomedical engineering and its Laennec from placing his ear next
young field of engineering and science affirmation has mainly appeared to a young woman’s bare chest, so
and is yet to be seen how it will affect the in the last 50 years, first as a result he rolled up a newspaper and lis-
world of development in electronic indus- tened through it, triggering the idea
In respect with growing popu- try (silicon transistor) while later it for his invention that led to today’s
lation, medicine and health care started developing at its own pace. ubiquitous stethoscope.
have changed dramatically in
the past few decades. Within the In this article, history overview of Throughout history, humans
modern health care system, engi- Biomedical Engineering is given have made increasingly more effec-
neering involvement is needed in with respect to present state in tive devices to diagnose and treat
overcoming challenges in human Bosnia and Herzegovina and future diseases and to alleviate, rehabil-
health protection, disease preven- research in this area in the world itate or compensate for disabil-
tion, treatment and rehabilitation bearing in mind that Biomedical ities or injuries. Miniaturisation
of patients throught introducing Engineering, or Bioengineering, is of diagnostic and therapeutic
sophisticated technology in every the application of engineering prin- devices, their lower power con-
day use, covering a wide range of ciples and methods in solving prob- sumption, portability and appear-
products, from simple bandages to lems in the fields of biology, med- ance of microprocessor enabled
the most sophisticated life - support icine and health care. Biomedical their applications in practically all
equipment and prothesis. Hospitals engineering is a unique mix of branches of medicine, from X-ray
and other medical institutions have engineering, medicine and science imaging devices, cardiac pace-
a commitment to take care of all emerged alongside biophysics and maker, antibiotic production tech-
kinds of high technology devices medical physics. nology, artificial kidney from the
including the hospital information early days, computerised tomog-
systems, networks and their safety raphy and magnetic resonance
and security. Growing technologi- imaging devices and methods,
cal participation in health services up to genomic sequencing &
SCIENCE
ABOUT SMALL
Enisa Omanović Mikličanin
NANOTECHNOLOGY
A LOVE
S T O RY Elma Ferić Bojić
NEUROSCIENCE AND GENETICS
“folded cloth” and a final suffix that brain and spinal cord. In the 1950s
means “little” (Figure 1). In fact the and 1960s both Massachusetts
glyphs represent sounds that all add Institute of Technology as well as
up to a word that approximately Harvard Medical School brought
means “skull-offal,” which is not together studies of biology, chem-
entirely respectful, but logical, con- istry, physics and mathemat-
sidering that the organ was teased ics and became the first to estab-
out through the nose and subse- lish free standing Neuroscience
quently thrown out upon mummi- departments.
fication. Moreover, it was the heart Subsequent advances in tech-
that was regarded as the center of nologies in molecular biology and
intelligence and thus given a lot genetics and a desire to understand
more attention. the link between genes, behavior,
Figure 1 Edwin Smith Surgical Papyrus
Despite the lack of respect that the brain and neurological disor-
and First Symbol for ‘Brain’
was given to the brain, the ancient ders gave birth to a field that com-
physician that conducted the exam- bined the studies of neuroscience
The brain is the center of inations referenced in the papyrus and genetics, namely neurogenetics
thought and emotion, and, essen- was aware of the life-threatening and gave rise to a concept termed
tially, the organ responsible for repercussions of injuries to that the ‘Genetic Brain.’ Even though
how we perceive the world around organ as well as their unexpected the history of genetics dates back
us. Yet it took humans quite some symptoms in the rest of the body. to the late nineteenth century, just
time to comprehend the ins and Head injuries that affect people’s a few decades before the purchase
outs of the center of their exis- ability to speak and walk as well of the papyrus, a time at which
tence. In fact, the first traces of as their visual abilities were also Gregor Mendel published his
neuroscience date back as far as mentioned in various cases in the genetic inheritance concepts, neu-
5000 years ago, to a time when text, and the same motor functions rogenetics began to expand in the
the ancient Egyptians referred to are tested today as means to inves- 1960s, pioneered by the research of
it cryptically. The document that tigate possible brain injuries. Seymour Benzer (Figure 3), who
illustrates this fact is termed the utilized the fruit fly to elucidate
Edwin Smith Papyrus (Figure 1), The investigations into the brain many neurological functions and
named after an Egyptologist who and allusions to it as the center of who is considered by many to be
purchased it in 1896 at which time intelligence varied throughout early the father of neurogenetics.
it was deciphered to have been history. The Middle Ages produced
written in approximately 3000BC. beautiful renditions of the organ No pun intended, but at the heart
However, since ancient Egyptians (Figure 2) and indications that of neurogenetics is the study of the
from this period did not have a humans’ understanding of the very role of genetics in the development
word for the organ, perhaps the tissue they use to think was become and function of the nervous system.
papyrus reveals how they did not more advanced are reflected in In this endeavor, neural character-
think about the brain. While the events in the twentieth century, istics are considered phenotypes
hand, heart and eye each had their whereby universities deemed it and are assumed to be unique to
own unique words, the term used to significant enough to justify aca- individuals, even those belonging
indicate “brain” is made up of four demic programs strictly devoted to the same species. Staying true
glyphs, namely “vulture,” “reed,” to studying the functions of the to its name, neurogenetics draws
aspects from both neuroscience While simpler diseases and dis- which implies that there is more
and genetics while it focuses on orders have genetically been pin- to a disease than what exists in the
an organism’s genetic code affects pointed, the genetics behind more genetic code.
its expressed traits. In other words, complex neurological disorders is a This points to a presently
in its dynamic nature, it focuses on source of ongoing research. One of dominant field of study termed
the impact of genes on the struc- the new developments that resulted epigenetics, namely an area that
ture and function of the brain and in possible elucidations of genetic focuses on the study of reversible
peripheral nervous system, which variability within the human pop- heritable changes in the function-
means that neurogenetics is a dici- ulation and thereby enabling more ing of a gene without alterations of
pline that aims at elucidating those readily discernible linked dis- the DNA sequences. Examples of
genes that determine or drive our eases are genome wide association these phenomena are mechanisms
individuality including diseases studies (GWAS). And while cur- such as histone de-acetylation and
and dysfunctions. rently no reliable treatment para- DNA methylation of non-coding
Therefore it is safe to claim digms exist that effectively reverse sequences which induce long-term
that mutations in the neurogenetic progressions of neurodegenerative silencing of transcription as a result
sequence may have a wide range diseases, further advancements in of environmental events that cause
of effects on one’s quality of life neurogenetics might yield to ther- long-term developmental changes
and must therefore be studied apeutic drugs that could reverse in chromatin structure. This, in
closely. The earliest studied dis- brain deterioration. turn highlights the present view of
eases include amyotrophic lateral the dynamic and thereby complex
sclerosis (ALS), Alzheimer’s and However, despite the fact that field of neurogenetics that is that
Huntington’s, and they are still at there are an increasing number of the brain, more than any other
the center of much research con- genetic polymorphisms that are organ, is under strong social and
ducted today. The contribution of studied, they still lack to fully environmental influences that can
genetics to the understanding of account for much of the variance have long-lasting effects on brain
cognition and psychiatric disor- seen in many psychiatric illnesses function and wellbeing.
ders has tended to focus on gene and thereby point to gene-envi-
polymorphisms, or the function- ronment interactions that have the But how lucky are we to live in
ally silent differences in DNA frag- ability to account for much more a time of rapidly advancing tech-
ments that are responsible for the of the causes and origins of psy- nology that enables us more so
vast variation in our species, that chiatric disorders. A powerful than ever to comprehend the inner
enabled linkage testing, or the anal- example of this idea is schizophre- workings of the very organ that we
ysis of the linkage between DNA nia, a disease that affects how an use as we attempt to comprehend
and gene defects. Furthermore, individual feels, thinks and acts. it?! How is that for a mind blow,
advancing technology made Those who are affected typically brain twister, mind teaser?
genetic analysis more feasible and have a difficult time distinguish-
available, which is why the last ing between what is real and what
decade of the 20th century was is imagined and with expressing
marked by an increase in identi- normal emotions in social situa-
fying genetic roles in neurological tions. The cause of the disease is
disorders. These advancements still mainly unknown, and while it
included, among many, disorders is only 50% concordant in genet-
such as Parkinson’s, Alzheimer’s, ically identical twins, the severity
Fragile X syndrome, epilepsy as of different life-events may predis-
well as ALS. pose some people to certain psychi- Figure 3 Seymor Benzer and a
atric disorders more so than others Drosophila
FROM GENES
TO THERAPY
Adnan Fojnica
GENE THERAPY
Understand the gene therapy
I S ALZHEIMER’S
IN YOUR GENES?
Džana Mulaomerović
ALZHEIMER´S DISEASE
These symptoms occur because
the early damage in Alzheimer’s
is usually in hippocampus, part of
a brain that has major role in day-
to-day memory. Memory for life
events that happened a long time
ago is often unaffected in the early
stages of the disease. Because of
memory loss, person may have
everyday difficulties such as: lose
items around the house, struggle
to find the right word in a conver-
sation, forget names, forget about
recent conversations or events, and
forget appointments or anniversa-
ries. Individuals with Alzheimer’s
also have, or would develop prob-
lems with other aspects of think-
ing, reasoning, perception or
communication.
Figure 1 If you have a brain, you are at risk for alzheimer
The genetics of disease
Alzheimer´s disease is a degen- of memory, paranoia and shrink-
erative disease of brain that results age of the brain. Psychiatrist The second most import-
in dementia or loss of memory, Emil Kraepelin coined the term
ant cause of the disease is family
judgment, and ability to function. “Alzheimer’s disease” in a medical
history. Twin and family studies
The disease usually affects indi- book in 1910. By this time several
suggest that genetic factors may
vidual older than 65 but it is not more cases with similar symptoms
play a major role in at least 80% of
a normal part of aging although were reported. In 1976, the neurol-
AD cases. Certain genes make you
it is one of the major risk factors. ogist Dr. Robert Katzman declared
more likely to develop Alzheimer’s
Alzheimer’s is considered to be a AD the most common form of disease, however, genetic risk
cause of 60 to 80 % of all dementia. dementia which brought aware-
factors are just one of the factors
ness to the disease. involved in getting Alzheimer’s
The discovery of Alzheimer’s disease.
disease (AD) Symptoms of Alzheimer’s AD is caused by any one of a
number of different single-gene
AD is named after German For most people with mutations on chromosomes 1, 14
doctor Alois Alzheimer. The first Alzheimer’s, the earliest symptoms or 21. These mutations involve
case of Alzheimer’s was reported is memory loss. Patients may have the gene for the amyloid precur-
by Alois Alzheimer in his patient difficulties recalling recent events sor protein (APP) and the genes
whose symptoms included loss or learning new information. for the presenilin 1 and presenilin
Alzheimer’s statistics
•Nearly 44 million people have
Alzheimer’s or a related dementia
worldwide
•Only 1 in4 people with disease have
been diagnosed.
•Alzheimer’s disease is listed as the
sixth-leading cause of death in the U.S.
•Alzheimer’s is most common in
Western Europe
•The cost of caring for Alzheimer’s
patients in the U.S was $226 billion
in 2015
•Life expectancy after an Alzheimer’s
is diagnosed is 4 to 8 years.
•2 in 3 people with Alzheimer’s disease
are women.
A,C,G & T
Anis Čilić
BIOINFORMATICS
A, C, G & T are ‘’letters’’ that solve some of the crucial questions analyse date obtained from Human
write ‘’book of life’’ inside each in life science and lay a foundation Genome Project and other genome
of us. It took too long for humans of science which, today, play great sequencing, and also to discover
to decipher these ‘’letters’’ and role in genetics, medicine, crimi- new information from existing
start reading ‘’book of life’’ nalistics, etc. data.
which keeps secrets inside them. Let’s take a look on the some
Begining of this process is con- So, what is bioinformatics? of the most important events that
nected with the development of contributed to developement of
technology. After World War II, Bioinformatics is scienece bioinformatics:
technology, which was used mostly which uses knowledge from One of the main landmark
in military puproses, became avail- biology, computer science and discoveries was prediction of the
able for scientists. Many scientific statistics to analyze different data duoble helix for DNA by Watson &
fields starts to implement technol- such us sequences of nucleic acids Crick in 1953. Their work helped
ogy in their researches. Progression and proteins, gene expression data, us in understanding genetic struc-
of technology, especially comput- different molecular pathways and ture and human genome and served
ers, leads to rapid development of nowdays different clinical data as basis for later genomic studies.
science. These technological ino- also. In 1955 first protein sequence
vations allowed more precise and Development of bioinformat- (bovine insuline) was analyzed
more detailed analysis of organis- ics was due to huge amount of data by Frederick Sanger. This dis-
ams and species and microworld created by frequent sequencing. covery earned him Nobel prize in
and it’s secrets start to appear... These data were able to be stored Chemistry in 1958. This was the
Information was accumulating and analyzed only by computer. begining of ‘’sequencing journey’’
as new researches were done. It The main purpose of the bioin- which will leave a mark on a
became imposible for human brain formatics is to store, compere and science and change it’s perspective.
to store, follow and process all
these things, so artificial memory
came to the fore. With the usage
of computers, science developed
rapidly and thus science was divid-
ing in some new fields. Biology,
informatics and statistics combined
together in one field to form bio-
informatics, which, for the first
time, appeared in literature in 1991
(although there are some records
that this term was used in conver-
sation in 1985).
Although the founders of this
science did not use term ‘’bioin-
formatics’’ to describe their field of
work, they knew how to make most
of computer technology, mathe- Figure 1 Huge amount of data created by frequent sequencing were able to be
matics and biology and on that way stored and analyzed only by computer.
A TRIP DOWN
M E M O RY L A N E
Dijana Sejdinović
MOLECULAR GENETICS
The history of molecular genet- enzyme that catalyzes a quite differ- deoxyribonucleic acid (DNA). This
ics is very rich and colorful in the ent reaction in the general metab- principle, obtained from dead bac-
events as well as characters that olism of the cell (heterocatalysis). terial cells of one strain, was shown
contributed to its development. In 1928, scientists didn’t know to transfer a characteristic from that
Before talking about the history it yet that DNA carried genetic infor- strain to another strain. This extract
is important to understand the term mation, but they knew that there contained only the minutest traces
of molecular genetics. Genetics is was something that could cause of protein; the rest was DNA.
not made up of two sciences, one bacteria to transform from one type Geneticists knew about this work,
molecular and one non-molecular to another. Griffith’s experiment but the majority assumed that the
even though the term molecular is was the first experiment suggesting DNA was acting as a mutagen,
still widely used among scientists. that bacteria are capable of trans- altering the genetic constitution of
Molecular genetics is an investi- ferring genetic information through the recipient cell, not transferring
gative approach that involves the a process known as transformation. a gene.
application of laboratory methods Griffith’s findings were followed Making the case for DNA
and research strategies. This by research in the late 1930s and acting as the repository of the
approach presupposes basic knowl- early 40s that isolated DNA as the genetic specificities of the organ-
edge about the expression and material that communicated this ism called for establishing the kind
regulation of genes at the molec- genetic information. of structure DNA possesses that
ular level. Philosophical interest The protein nature of the would permit it to function thus.
in molecular genetics, however, gene was called into question in Known to be a long-chain mole-
has centered, not on investigative 1944 when three Rockefeller sci- cule, its backbone composed of
approaches or laboratory methods, entists, Ostwald Avery, Colin sugar rings attached to one another
but on theory. Early philosophical MacLeod, and Maclyn McCarty, by phosphate arms, it has only
research concerned the basic theory published their identification of the four kinds of side-groups attached
about the make-up, expression, and so-called transforming principle as to the sugars—the bases adenine,
regulation of genes.
The first half of 20th century
is often referred as classical genet-
ics. Morgan had set the tone, treat-
ing the gene as an abstraction and
the Mendelian analysis of exper-
imental data as an algorithm. In
1922 Muller had drawn the analogy
between bacterial viruses and
genes. During this period a concern
of identifying gene products chem-
ically has continued. Nonetheless,
the chemical constitution of the
gene remained vague, and geneti-
cists were content to assume it was
a protein of a special kind: one that
can both catalyze its own reproduc-
tion (autocatalysis) and provide an Figure 1 The Avery–MacLeod–McCarty experiment
9 G R E AT E S T
DISCOVERIES
Ahmed Osmanović
GENETIC TIMELINE
2 1 8 61865-Heredity
5-
Transmitted
Heredity
in Units
Transmitted in Units
their environment. Natural selec- Thomas Hunt Morgan and his stu-
tion leads to evolutionary change dents study fruit fly chromosomes.
when individuals with certain char- By painstakingly examining thou-
acteristics have a greater survival sands upon thousands of flies with
or reproductive rate than other indi- a microscope and a magnifying
viduals in a population and pass on glass, Morgan and his colleagues
these inheritable genetic character- confirmed the chromosomal
istics to their offspring. Simply put, theory of inheritance: that genes
natural selection is a consistent dif- are located on chromosomes like
ference in survival and reproduc- beads on a string, and that some
tion between different genotypes, genes are linked (meaning they
or even different genes, in what we are on the same chromosome and
could call reproductive success. [A always inherited together). One of
genotype is a group of organisms his students, Alfred Sturtevant, cre-
sharing a specific genetic makeup.] ated the first ever genetic map, a
landmark event in genetics.
BurchGene Magazine | May 2016
Hist or y of Ge ne tic s 27
8
quently inserting the hybrid DNA
4
into a host cell, often a bacterium. 1983- PCR Invented
11952-Genes
9 5 2 - G e nAre
e s Made
Are
M a d e of DNA
of DNA The polymerase chain reac-
tion (PCR) technique, invented in
Alfred Hershey & Martha Chase 1985 by Kary B. Mullis, allowed
show that only the DNA of a virus scientists to make millions of
needs to enter a bacterium to copies of a scarce sample of DNA.
infect it, providing strong support The technique has revolutionized
for the idea that genes are made many aspects of current research,
of DNA. Alfred Hershey was a including the diagnosis of genetic
phage geneticist who, with his defects and the detection of the
research assistant, Martha Chase, AIDS virus in human cells. The
did one of the most famous exper- technique is also used by crimi-
iments in molecular biology. The nologists to link specific persons to
“blender” experiment proved that samples of blood or hair via DNA
DNA carried genetic information. comparison. PCR also affected
evolutionary studies because large
quantities of DNA can be manufac-
7
tured from fossils containing but
1 9 DNA
1975- 7 5 Sequencing
- D N A trace amounts.
9
now, they use colored dyes.
22003-
0 0 3 - Completion
C o m p l e t iof
on
othe
f Humant h e Genome
Human
5
Project
1953- DNA Double Helix
The Human Genome Project (HGP)
In 1953, the race to deter- was one of the great feats of explo-
mine how these pieces fit together ration in history - an inward voyage
in a three-dimensional structure of discovery rather than an outward
was won by James Watson and exploration of the planet or the
Francis Crick at the Cavendish cosmos; an international research
Laboratory in Cambridge, England. effort to sequence and map all of
They showed that alternating the genes - together known as the
deoxyribose and phosphate mole- genome - of members of our spe-
cules form the twisted uprights of cies, Homo sapiens. Completed in
the DNA ladder. The rungs of the April 2003, the HGP gave us the
ladder are formed by complemen- ability, for the first time, to read
tary pairs of nitrogen bases — A nature’s complete genetic blueprint
always paired with T and G always for building a human being.
paired with C.