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ORGANOIDS
EVENT HIGHLIGHTS
APRIL 2018
POTENTIAL
OSTEOPOROSIS
TREATMENT
INNATE DEFENCE
Photo credit: Kitty Liu
REGULATOR PEPTIDES
director’s note
2
CBR (and UBC) owes him a debt of
gratitude. We wish him well.
TABLE OF CONTENTS
To the future? We continue to seek
new partnerships and stronger
links between the lab and the clinic. RESEARCH EVENTS
Searching for new sources of funding
remains a priority. The establishment of
the Sheldon Naiman and Linda Vickars 6 Osteoporosis
Treatment 13 Conference
Pseudomonas
on
Endowment will provide new means
7 Iron Chelation
14 Earl Davie
of supporting initiatives in benign
hematology. In the past year, the School Therapy Symposium
of Biomedical Engineering was created
at UBC, through a strategic partnership
between the Faculties of Medicine and
Applied Science. In 2018, the CBR is
8 Human Kidney
Organoids 20 Proteolysis
Society Meeting
seizing a unique opportunity that will
help to further propel the integration
of life scientists and physicians with
bio-engineers. We are welcoming
9 Innate Defense
Regulator Peptides 22 STEMCELL
Technologies Visit
two accomplished UBC Professors
of Applied Science, Professors Karen
Cheung and Hongshen Ma, providing
10 Extending
Platelet Shelf Life 23 American
Hematology Society
them with memberships and CBR
research space in the Life Sciences
Centre. Profs Cheung and Ma are
founding members of the School of
12 Bacterial
Response
Starvation
24 Paddleboarding
Extravaganza
Biomedical Engineering, and both
have already cemented collaborative
research projects with CBR and Life AWA R D S PROFILES
Sciences Institute members. They
bring with them fresh ideas, new
technologies, opportunities for growth, 5 Biophysical
Society Fellow 18 Deb Chen
and a whole bunch of enthusiastic and
skilled students! We welcome them
and look forward to having them join
us in ensuring that the CBR continues
11 CBR Travel
Awards 27 Ross MacGillivray
to flourish as a world-class translation
17 Michael John
research centre.
Page Award OPINION
For the year gone by and the year
coming, special thanks to our CBR
Office Managers, Hana Kim and Mira
Milutinovic, who work so hard for all 26 Faculty
Award
Research
16 Pro-Vaccination
Strategies
of us.
GOALS
CBR Research & Clinical Goals
• Improve the quality and safety of blood
product collection, storage and delivery
• Create new knowledge to better treat
bleeding and clotting disorders
• Develop novel approaches to
modulate the immune system to
treat inflammation and infections and
Patient-driven. Innovative. Community. promote wound repair
Over the past year, donor support has helped us develop novel approaches
to battle severe bleeding in rural areas, delineate the mechanisms of
inflammatory diseases, and increase the quality of blood products used in
transfusions – only a few examples among many pioneering discoveries.
With your continued support, the CBR will further transform innovative
ideas into life-enhancing solutions.
The CBR needs you to help fund our programs that range from $50 to
$100,000. We invite you to explore opportunities at the CBR where your
partnership with us will result in positive impacts on education, training and
meaningful research. Examples of initiatives that need your support include:
Opportunity Cost
Reward leadership in students and staff with the Neil $50
Mackenzie Mentorship Award
Expose trainees to diverse career opportunities with the
CBR Career Night
$1,000
E D U CAT I O N
Jumpstart a postdoctoral fellow’s career with the $5,000 CBR Education Commitment
Postdoctoral Transition Award • Support student research through
Support a clinical fellow in Translational Research Studies $75,000 competitive undergraduate, graduate,
and postgraduate awards
• Offer a range of stimulating educational
Make a CBR Symposium possible $25,000-
symposia, workshops, and seminars
$100,000
• Provide cutting-edge career
Explore further: CBR.ubc.ca/support-us
development opportunities for our
Edward M. Conway, MD, PhD
trainees
Director, Centre for Blood Research
Tel: 604.822.4252 | Email: ed.conway@ubc.ca
4
awards
D
Georgina Butler*
Houra Loghmani-khouzani* r. Natalie Strynadka is a
J. Andrew Alexander* Distinguished Professor and
Jennifer Grants
Julie Kora researcher in the Department of
Katharine Sedivy-Haley Biochemistry and Molecular Biology
Lily Takeuchi
Michael Hughes* at the University of British Columbia
Stefanie Novakowski
Usama Abbasi
and a member of the Centre for Blood
Vivienne Chan Research (CBR). She is known for
Wayne Zhao
* indicates Editorial Board member
her research in the fields of antibiotic
resistance and biophysics. Dr. Strynadka
COVER PHOTO Kitty Liu
BLOG cbr.ubc.ca recently received the honour of being
FACEBOOK /cbrubc chosen as the 2018 Fellow of the
TWITTER @CBR_UBC
INSTAGRAM @CBR_UBC Biophysical Society of Canada (BSC).
She will receive this award at the 4th
CBR magazine is published by the
Knowledge Translation Committee, Annual Biophysical Society meeting,
a group of CBR graduate students, held on May 22-25, 2018 in Vancouver,
postdoctoral fellows, research associates,
and technicians who are interested in BC.
science writing, blogging, and mixed
media communications. It is distributed
free of charge to CBR and UBC alumni, The Biophysical Society of Canada
friends, and the scientific community.
Opinions expressed in the magazine do was founded in 1985 and works to
not necessarily reflect the views of the support biophysics research in Canada
centre or the university.
Address correspondence to: through a variety of awards, programs,
The Centre for Blood Research and meetings. Annually, the BSC
4th Floor, Life Sciences Centre
2350 Health Sciences Mall recognizes researchers who have
Vancouver, BC, Canada V6T 1Z3 made extraordinary research contributions as Fellows of the Biophysical Society. To gather exceptional
The KT Committee publishes weekly
at CBR News (cbr.ubc.ca) and covers a candidates for this award, the BSC asks for nominations in the fields of biophysics and biophysical
wide range of topics: from recent research
chemistry. The selected Fellow then presents the National Lecture at the Annual meeting of the BSC.
highlights and opinion pieces on science
and academia, to event coverage and
CBR initiatives. If you are interested in
participating in the KT Committee, email
In 2010, Dr. Strynadka received a Tier 1 Canada Research Chair in Antibiotic Discovery and has
Julie at: julie.kora@ubc.ca or talk to one been recognized through numerous academic and other awards and distinctions for her outstanding
of the members! All grad students, PDFs,
RAs, and technicians are welcome to join. work. In 2012, Dr. Strynadka received the prestigious Senior International Research Scholar award from
the Howard Hughes Medical Institute. She has also been honoured as a Medical Research Council of
CONTACT Canada Scholar, a Canadian Institute of Health Research Scientist, a Michael Smith Foundation for
julie.kora@ubc.ca Health Research Senior Scholar, and was elected a Fellow of the Royal Society in 2015.
Knowledge
Translation Congratulations to Dr. Strynadka on her latest award and her many notable
Committee
Science beyond academia
achievements! C
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research
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research
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research
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research
I nflammation is an important
component of our body’s defence
system, but excessive or inappropriate
production of inflammatory mediators:
IL-6, MCP-1, CXCL1 and reactive
nitrogen species in cultured monocytes/
pathway, which is known to be essential
in PMA-induced inflammation. Peptide
treatment suppressed a subset of
inflammation is the main cause behind macrophages. To study this effect in rhodopsin-like receptor genes recognizing
many human diseases, including vivo, the researchers topically applied pro-inflammatory mediators such
Alzheimer’s, atherosclerosis, and the inflammatory agent PMA to mouse as prostaglandin and histamine. The
rheumatoid arthritis. Immunosuppressive ears, immediately followed by IDR-1002 rhodopsin-like receptors are a major family
therapies are often used to treat such or the nonsteroidal anti-inflammatory of the G-coupled protein receptor (GPCR)
disorders, but these treatments also drug indomethacin. The application of group. Interestingly, under conditions of
increase the patient’s risk of infection. In PMA alone causes the recruitment of bacterial infection IDR-1002 can act on
a recent paper,1 Bing Catherine Wu and inflammatory mediator cells such as one or more unidentified GPCR receptors
Amy Lee of the Hancock Lab identify neutrophils, and leads to visible swelling or to increase chemokine production and
a new potential therapy without this edema within 6 hours of treatment. Peptide neutrophil infiltration,2 which suggests that
downside: Innate Defence Regulator (IDR) treatment significantly suppressed both these peptides may have different effects
peptides. the influx of neutrophils and the observed depending on the inflammatory trigger. In
IDR peptides are synthetic versions swelling. The peptide also reduced the the sterile context, the anti-inflammatory
of Host Defence Peptides, naturally local levels of IL-6, MCP-1, CXCL1, and effect of IDR -1002 is likely contributed by
occurring molecules which modulate the reactive oxygen and nitrogen species. the suppression of an IFN regulatory factor
immune system in addition to having These effects were comparable to those 8–regulated network, which is known to
direct antimicrobial activity (as previously of indomethacin, suggesting potential control central inflammatory pathways.
covered by the CBR). Wu and Lee therapeutic application. While IDR-1002 shows compelling
investigated IDR peptide 1002, which has To understand the function of IDR- anti-inflammatory properties, additional
been previously demonstrated to dampen 1002 in more depth, the researchers then experiments are necessary to confirm the
inflammation during bacterial infection used RNA-Seq to compare the genetic safety and effectiveness of IDR-1002 in
while preserving or enhancing the body’s expression within ear tissue after treatment humans. Wu currently plans to test the
ability to fight infection. However, it with a solvent control, PMA, and both peptide in a more human-like context, for
had not yet been determined whether PMA and the peptide. PMA treatment example in an ex-vivo human skin model.
IDR-1002 would have similar activity was confirmed to increase the expression Hopefully, IDR-1002 or similar peptides
in instances of sterile inflammation not of genes associated with inflammation, can be developed into therapeutics capable
caused by bacteria, such as in arthritis or including cytokine signalling, especially of reducing inflammation in a variety of
atherosclerosis. Using a mouse ear model, IFN-γ, TNF-α, and IL-1 cascade, and class non-infectious diseases without weakening
Wu and Lee discovered that the peptide A/1 rhodopsin-like receptors including the patient’s immune response system.
does indeed have strong anti-inflammatory chemokine receptors. However the PMA/
1
effects in sterile, chemically induced peptide combination downregulated Journal of Immunology (2017) 199:
inflammation. many of these pathways, including genes 3592-3603.
2
The researchers first determined responsible for recruiting inflammatory Journal of Immunology (2010) 184:
that in vitro, IDR-1002 dampened the cells such as neutrophils, and the IFN-γ 2539-2550. C
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research
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awards
A nnually, the Centre for Blood Research offers five travel awards to Postdoctoral Fellows and Research Associates to help make travel
to conferences and academic events more feasible. Any Postdoctoral Fellow or Research Associate may apply, provided they have not
received an award in the last year. Each award offers $1,000 to supplement other funding sources. Throughout past years, recipients have
attended and presented research at a wide variety of conferences and events in far-reaching corners of the country and the world. Upon
their return, awardees write short reports on the conferences they attended and their experiences, which are posted on the CBR website.
Jennifer Grants, Postdoctoral Fellow Meera Raj, Postdoctoral Fellow Peter Bell, Postdoctoral Fellow in the
in the Karsan Lab in the Scott Lab Overall Lab
Attended the 59th American Society of Will attend the 31st Annual Meeting of the Will attend the 3rd Matrix Biology Europe
Hematology Annual Meeting in Atlanta, Canadian Society for Immunology in London, Meeting in Manchester, UK
GA ON July 2018
December 2017 June 2018
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research
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events
16th International
Conference on Pseudomonas
By DANIEL PLETZER, Postdoctoral Fellow in
Hancock Lab
W ith support provided by a CBR Post-Doc Travel Award, I had the opportunity
to attend the biennial Pseudomonas conference between September 5
and 9, 2017 in Liverpool, UK. This conference primarily focused on bacteria from
the Pseudomonas genus and brought together researchers from all over the world.
During this meeting, various exciting research topics were covered, including
evolutionary biology, infections and host-pathogen interactions, signalling systems,
genomics, and biofilm research related to antibiotics and resistance.
I had the opportunity to present a poster which described a cutaneous murine
abscess model using the important human pathogen Pseudomonas aeruginosa.
This model could potentially be a game changer in the field, since it can be easily
implemented without technical challenges and can be used to study acute and Poster presentation hall
chronic infections. I used this model to treat high-density bacterial infections with
synthetic anti-biofilm peptides developed in our lab. I furthermore showed that
the mechanisms of action of these peptides could be linked to the stringent stress
response in vivo. My work was of significant interest to other attendees at the
conference, and I got a chance to talk with many experts and shared many ideas
while learning about the thrilling work being done by others in the field.
Overall, the conference had a great mix of interesting, inspiring, and insightful
talks and posters. The breathtaking venue of the meeting was at the UNESCO
World Heritage St. George’s Hall, one of the finest examples of neo-classical
architecture in the world. During my trip, I also got a chance to see the city of
Liverpool, the birthplace of the Beatles, and visited numerous tourist attractions,
including the Liverpool cathedral and the Albert Dock. I also enjoyed the local pub
experience and British culinary delights. C
Hotel room in Beatle style (IBIS Styles Liverpool)
View from the harbour.
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events
Dr. Earl Davie (centre left) and Dr. Eddy Fischer (centre right) with symposium speakers
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events
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opinion
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awards
About Dr. Michael John Page: Michael John Page was born and raised in Thunder Bay,
Ontario, where he graduated from Port Arthur Collegiate in 1994. He attended Carleton
University in Ottawa, graduating with his B.Sc. in Biochemistry in 1998. Following, he
entered the Biochemistry & Molecular Biology graduate program at UBC under Ross
MacGillivray’s supervision. During his graduate studies, his fellow students recognized
Mike’s achievements by selecting him for the prestigious 2001 Zbarsky Prize. He then
completed a highly productive postdoctoral fellowship, studying the biological activity of
thrombin with Dr. Enrico Di Cera at Washington University in St. Louis, and in 2010, moved
to a junior faculty position at the University of California, San Francisco, mentored by Dr.
Charles Craik. Tragically, Mike died suddenly in June 2013 at age 36, leaving a legacy of a
thirst for knowledge and a love of life.
Thank you to New England Biolabs, the Page Family, and the Department of Biochemistry
and Molecular Biology for their generous support to make this award possible!
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profiles
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profiles
The theme of all that I’ve done relates to people. The reason for my continual involvement in these
exploratory undertakings has been because of the people I’ve worked with; they’ve challenged me
to grow within my various capacities, embraced my mistakes, and celebrated my risk-taking and
achievements.
Q. What insight can you provide into the job search experience for others who are
finishing up a graduate degree?
A. I devoted a lot of time every day to browsing jobs and connecting with my existing network to
help me identify my strengths and to articulate what I wanted for my next step. This has been a
process where I’ve needed to be persistent in continually looking for opportunities and letting my
network know what I wanted to do. Your network holds you accountable and can direct you to
opportunities you might not otherwise have access to.
My approach was to dedicate at least 1 hour every day during the thesis writing process to figure out
all of these career pieces and how they aligned with what I wanted to do.
Q. What has been the most valuable thing you’ve gained from your experience at the
CBR?
A. The network, the people, and the opportunities that came with the CBR as a package that I’ve
been happily exploiting.
Q. What advice do you have for current grad students, knowing what you know now?
A. Try things that scare you. Create protected time to explore things that might not be fully
aligned with your research (within reason of course; I don’t want to get you in trouble with your
supervisors). Be open and curious about new opportunities, because you never know how the
things you learn or gain (whether that’s a skill or an insight into yourself) may inform or support
your future goals.
Deb would be happy to answer your questions and to share her experiences with graduate students.
She can be contacted at debchen@mail.ubc.ca. C
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events
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opinion
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events
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events
W ith support provided by a CBR Post-Doc Travel Award, I had the opportunity to attend the 59th American
Society of Hematology Meeting from December 9th to 12th in Atlanta, GA. This is one of the most
comprehensive international hematology conferences and attracted approximately 20,000 hematology researchers
and physicians. The meeting covered various exciting topics, including molecular mechanisms in normal
hematopoiesis and in hematological disease, novel therapies, and clinical trial reports.
I had the opportunity to deliver an oral presentation describing a single-cell-resolution study of hematopoietic stem cell (HSC) function
in a mouse model that exhibits chronic inflammation due to loss of a gene commonly deleted in myeloid leukemia patients. My study
provided evidence that this genetic lesion, which affects a gene called miR-146a, can alter HSC function and cell population structure far prior
to the onset of overt disease symptoms, and that reducing inflammation can prevent this HSC dysfunction. These results provided insight
into the mechanisms by which miR-146a loss initiates myeloid leukemia, and suggested that myeloid leukemia patients with loss of miR-146a
could potentially benefit from anti-inflammatory drugs in addition to standard chemotherapy.
My work was of interest to other attendees at the conference, and I had the excellent opportunity to discuss my results and share ideas
with other researchers in my field. C
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events
E ach month, the Health and Wellness Committee (H&W) of the CBR
organizes a fun activity for CBR members to leave their bench, learn
new skills, and exercise. On September 12th, they all ventured down to
group had polished through the snacks. Moments passed before
the group noticed that Abhinav Kumar and Marta Ordoño, graduate
students in the Côté lab, had not made it to shore with the rest of the
Jericho Beach for a relaxing evening of paddleboarding at the Jericho group. It seemed as though Abhinav and Marta were not able to fight
Sailing Center. the combined forces of the choppy waves and certain shamelessly
Everyone arrived, ready to jump onto a paddleboard and voyage hungry students. After several minutes of only slightly frantic searching
through Vancouver’s harbour. After thoughtfully selecting the right (the onshore group started feeling rather sleepy), the pair was spotted
paddleboard, we took to the ocean. Sam Hinshaw, a graduate student in the far distance, slowly, but surely, paddling toward the shore. It was
and notorious show-off in the Hancock lab, entered the water with a close call, but thankfully the $30 dollar rescue fee did not need to be
ease and quickly paddled away. The rest followed cautiously, as the spent!
ocean currents were choppier than expected. After several paddles, The sight of the North Shore Mountains, Vancouver’s skyline,
most CBR members became comfortable maneuvering the board and the setting sun made for a memorable experience on the water.
through the waves and coincidentally began to warm up to Sam again. The minor incident involving the brief disappearance of two group
Many members even had the courage to stand up on the paddleboard members was quickly forgotten by all but Abhinav and Marta. After
and drop into oncoming waves like professionals. There was a all, the CBR’s paddleboarding excursion was a great bonding activity in
noticeable camaraderie growing amongst the group as we explored a beautiful, marine backdrop. Sarah Mansour of the Hancock lab even
Vancouver’s harbour in this somewhat unconventional way. claims she was greeted by a pod of orcas that, shockingly, no one else
As appetites grew stronger, the hungry CBR members began witnessed. Naturally, Sam Hinshaw recounted a tale of single-handedly
making their way back to shore for some well-deserved snacks fighting off a great white shark. This surprised no one, of course.
and refreshments, generously provided by the H&W Committee. Many thanks to Bernard with Windsure Adventure Watersports
Approximately two and a half minutes upon landing on shore, the for his paddleboarding guidance and assistance! C
CBR Paddleboarders
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partnership
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awards
D r. Jay Kizhakkedathu is a
Professor and researcher
in the Department of Pathology
and Laboratory Medicine, an
Associate Member with the
Department of Chemistry, and
a member of the Centre for
Blood Research (CBR) at the
University of British Columbia
(UBC). His research focuses on
the themes of macromolecular
therapeutics, cell-surface
engineering, proteomic
reagents, and blood-compatible
Dr. Jay Kizhakkedathu
surfaces and devices. Dr.
Kizhakkedathu has recently been awarded the 2017 UBC Killam Research Prize, which recognizes
outstanding research and scholarly contributions to a variety of fields. Dr. Kizhakkedathu will
receive this honour at an awards reception, held on April 17, 2018 in the Chan Centre at UBC.
The UBC Killam Research Prizes are awarded on an annual basis to full-time faculty
researchers who demonstrate excellence in their fields. Five awards are available in the area of Arts
and Humanities, and five are reserved for Applied Science and Medicine. Faculty members are
nominated for awards by two to three tenure track faculty members who illustrate how candidates
have impacted their research fields.
In addition to the Killam Research Award, Dr. Kizhakkedathu received the UBC Faculty
of Medicine Distinguished Achievement Award in 2013, was recognized as a Michael Smith
Foundation for Health Research Scholar in 2011, and received the Department of Pathology and
Laboratory Medicine Excellence in Research and Discovery Award in 2011. Dr. Kizhakkedathu was
also honoured with the Canadian Institutes of Health Research New Investigator award in 2005.
His research has been published in numerous science journals, including Science Translational
Medicine, Nature Materials, Nature Biotechnology, Nature Communications, Blood, Journal of the
American Chemical Society, Biomaterials, and many others. C
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We thank all our donors from academia, industry, and
the private sector for your generous contributions. cbr.ubc.ca