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A difficult pedagogic problem in Biochemistry is teaching
amino acid metabolism. The names of amino acids and the
names of the Krebs-cycle intermediates, pyruvate and/or How Long is the Longest unbrokenI
carbon chain in the amino acid?l
acetyl CoA to which the amino acids are first metabolized (Except for gLycine, this will I
are often presented to summarize these catabolic path- be the number of carbons in the J
ways (Fig l). 1-5 However, this approach does not rein- intermediate to which the aminoI
force learning of the structures of the compounds involved
l acid is first metabolized) I
nor does it encourage students to recognize the relation-
5 carbons: The a m i n ~ o n s (Two carbons for
ships between structures of compounds in a metabolic is metabolized to 2_-oxo- ~ IgLycine): The amino acid is
pathway. Thus, students may memorize the names of gLutarate --- ~ [metabolized to pyruvate
amino acids and the names of selected compounds to [(GLu, Gin, Pro, Arg, His) ~ l ~ [(ALa, Set, Cys, G-~y)
which these substances are converted in order to pass an
exam, but it is unlikely that they will retain this infor- Are there fewer than four carbon
to hydrogen bonds? (Implies o more
mation after the examination period. oxidized amino acid which should
We have devised a method for summarizing catabolism produce a more oxidized intermediate
of amino acids to intermediates of the Krebs cycle, / ' x
pyruvate and/or acetyl CoA based on the structures of
No : The amino acid is / ~ Yes The amino acid is
these compounds. This method seems to help students m-~etaboLized to SuccinyL~" ~l metabolized to oxaLoacetate
understand the underlying relationships between bio- I Co.__AA(Thr, VaL, M--et~ J 1(Asp, Asn)
chemicals and remember the structures of related com- Figure 2 Structural basis of metabolism of the twenty
pounds. amino acids coded for in DNA to intermediates of the
The method is based on three basic concepts. First, part Krebs cycle, pyruvate or acetyl CoA via major pathways
or all of the carbon skeleton of six of the amino acids found in mammals
coded for in D N A must be metabolized to acetyl CoA in
partly or entirely 'ketogenic' in that the portion of their
mammals. These six amino acids can be considered to be
carbon skeleton which must be metabolized to acetyl CoA
kysine cannot be used for net glucose synthesis. The six partly or
wholely 'ketogenic' amino acids are also the amino acids
ICYsteine 1 " ~ IPhenyLalanine which are most 'fatty acid-like '5 in that they contain a
I serene I ~ I ryr°sine chain of three or more hydrocarbon carbons beginning
with the 13 carbon (carbon number 3) (Figs 1, 2 and 3a).
Beta-oxidation of fatty acids, which usually have a
predominately hydrocarbon structure, must, for the most
part, also produce acetyl CoA.
I Oxatoacetate The carbon skeletons of the other 14 amino acids coded
for in DNA can be used to synthesize glucose. Each of
Krebs cycle 1 these carbon skeletons can be converted, via major
mammalian metabolic pathways, to a particular intermedi-
ate of the Krebs cycle or to pyruvate before being metab-
olized to other compounds. For these pathways, the inter-
mediate in which the carbon from the amino acid first
\ / GLutamatIe appears, contains the same number of carbon atoms as the
~. ~ GLutaminIe longest unbroken chain of carbon atoms present in the
]SuccinyL CoA~'f ,A,!g)?ine
, I amino acid (Figures 1, 2 and 3b); glycine is the only
/ p'rSi': ne
exception to this rule. Five amino acids contain five
Methionine I carbons in a row and are converted to 2-oxoglutarate,
Threonine three amino acids contain three carbon atoms and are
Vat ne metabolized to pyruvate (as is glycine) and five amino
Figure 1 Summary of conversion of amino acids to acids contain an unbroken chain of four carbons and can
intermediates of the Krebs cycle, pyruvate and~or acetyl lead initially to the net production of either succinyl CoA
CoA or oxaloacetate.
B I O C H E M I C A L E D U C A T I O N 13(1) 1985
26
B I O C H E M I C A L E D U C A T I O N 13(1) 1985