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Accepted Article

Title: Computational Studies on Biosynthetic Carbocation


Rearrangements leading to Quiannulatene: Initial Conformation
Regulates Biosynthetic Route, Stereochemistry, and Type of
Skeleton

Authors: Hajime SATO, Takaaki Mitsuhashi, mami yamazaki, Ikuro


Abe, and Masanobu Uchiyama

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To be cited as: Angew. Chem. Int. Ed. 10.1002/anie.201807139


Angew. Chem. 10.1002/ange.201807139

Link to VoR: http://dx.doi.org/10.1002/anie.201807139


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Computational Studies on Biosynthetic Carbocation


Rearrangements leading to Quiannulatene: Initial Conformation
Regulates Biosynthetic Route, Stereochemistry, and Type of
Skeleton
Hajime Sato,* Takaaki Mitsuhashi, Mami Yamazaki, Ikuro Abe,* and Masanobu Uchiyama*

Accepted Manuscript
Abstract: The results of quantum chemical calculations on the interest to unveil the biosynthetic pathway/mechanism leading to
mechanism of the carbocation cascade of reactions in the this chiral, congested, polycyclic and structurally complex
biosynthetic pathways leading to the pentacyclic sesterterpenes molecule.3
quiannulatene and sesterfisherol provide reasonable answers to Terpene cyclization has been proposed to proceed via a
several persistent mechanistic questions in sesterterpene sophisticated multi-step carbocation cascade. In the early stage
biosynthesis, including (1) the reaction pathways of the multi-cyclic of the ring construction, sesterterpene cyclization cascades can
ring system construction and skeletal rearrangements, (2) the be classified into two groups (Scheme 1).2b Initial dissociation of
mechanism of triquinane skeleton formation, which requires more diphosphate of geranylfarnesyl diphosphate (GFPP) followed by
complicated rearrangements than previously proposed, (3) the cation-mediated double-annulation gives a 5/15 bicyclic
stereochemistry of the final carbocation intermediate, and (4) the intermediate (Type A) or a 5/11 bicyclic intermediate (Type B).
determining factor of biosynthetic selection of 5/6/4/6/5 or 5/6/5/5/5 Quiannulatene belongs Type A sesterterpenoids. In Type A, two
pentacyclic skeleton formation. This in-depth mechanistic study on cyclization paths are possible from the 5/15 bicyclic intermediate
sesterterpene biosynthesis revealed that the shape of the final to give tricyclic sesterterpenoids: for example, nitiol4 and
product and the type of triquinane skeleton formed are regulated by variculanol5 have a 5/12/5 tricyclic skeleton (Scheme 2, path a),
the stereochemistry and conformation of the common starting while thalianatriene6 and aspterpenacids7 have a 5/6/11 tricyclic
material, geranylfarnesyl diphosphate (GFPP). structure (Scheme 2, path b). Further, Osbourn & Tantillo
reported the 5/6/11 tricyclic skeleton as a common intermediate
in the biosynthesis of two sesterterpenoids, astellatene2h and
Terpenes/terpenoids are a large and highly diverse group of
arathanadiene.2i On the other hand, our computational and
natural products; over 80,000 terpenoids with a wide range of
experimental studies have revealed that sesterfisherol
chemical structures and various biological activities have been
biosynthesis involves formation of a 5/12/5 tricyclic
reported to date.1 The structural diversity and complexity are
intermediate.8 Thus, the multi-ring construction
generated in the course of the cyclization reactions catalyzed by
processes/mechanisms in sesterterpenoid biosynthesis remain
terpene cyclases (TCs), which provide remarkable examples of
controversial, mainly because TCs catalyze domino-type
exquisite enzymatic control of the course of a chemical reaction
sequential reactions in their active sites and isolation of
cascade. Many terpene cyclases have been discovered and
intermediates is extremely challenging.
characterized to date.1 Nevertheless, sesterterpenoids remain
the least common group of terpenoids, and only a very limited
number of sesterterpene synthases have been identified.2 We
have reported the sesterterpene quiannulatene,2e which was
originally isolated from Emericella variecolor and recently also
from Arabidopsis thaliana,2h characterized its synthase EvQS,
and proposed a biosynthetic mechanism based on labeling
experiments. Quiannulatene has a unique 5/6/5/5/5 pentacyclic Scheme 1. Classification of cyclization modes. After the dissociation of
structure with eight chiral centers. Thus, it is of considerable pyrophosphate, the carbocation on C1 reacts with the IV and V double bonds
in Type A, but the III and IV double bonds in Type B.

[*] Dr. H. Sato, Prof. M. Yamazaki


Graduate School of Pharmaceutical Sciences, Chiba University A 5/6/8/5 tetracyclic intermediate is considered to be involved
1-8-1 Inohana, Chuoku, Chiba 260-8675 (Japan) in both quiannulatene and sesterfisherol biosynthesis. However,
E-mail: hajime.sato@chiba-u.jp
four-membered ring formation from the intermediate proceeds in
T. Mitsuhashi, Prof. I, Abe, Prof. M. Uchiyama
Graduate School of Pharmaceutical Sciences, University of Tokyo quiannulatene biosynthesis, leading to the triquinane skeleton,
7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan) whereas five-membered ring formation occurs in sesterfisherol
E-mail: abei@mol.f.u-tokyo.ac.jp, uchiyama@mol.f.u-tokyo.ac.jp biosynthesis to give another type of triquinane intermediate
Dr. H. Sato, Prof. M. Uchiyama
(Scheme 2). Interestingly, terpene cyclization mechanisms were
Cluster of Pioneering Research (CPR), Advanced Elements
Chemistry Laboratory, RIKEN, suggested to be correlated with phylogenetic tree classification,
2-1 Hirosawa, Wako, Saitama 351-0198, Japan and EvQS is classified into a different clade from sesterfisherol
Supporting information for this article is given via a link at the end of synthase (NfSS).2e Thus, there must be a determinant factor for
the document.
the selection of skeleton types and cyclization modes.

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We are also interested in the triquinane structure. Although (TS_6a-6b) for B-ring formation is the rate-determining step with
the triquinane skeleton is often seen in C15 sesquiterpenes,9 the highest energy barrier in this cyclization cascade. Our
only a few C25 sesterterpenoids, such as retigeranic acid10 and calculation results provide several new insights into the
retigeranol11, contain this skeleton, as sesterterpenoids are still complicated ring formation/skeletal reaction processes and the
relatively unexplored as a natural product group in comparison conformational changes (the cartesian coordinates of the 3D
to sesquiterpenes. A triquinane structure was identified as an structures of all species are shown in the supporting information).
intermediate in our previous theoretical analysis of sesterfisherol Details of the Biosynthetic Pathway to Quianulatene.
biosynthesis,2j but it was distinct from that in the case of Dissociation of diphosphate from GFPP yields an allylic
quiannulatene. The mechanism of triquinane formation is carbocation (IM1) partially stabilized by a cation–p interaction
complicated, involving multiple alkyl and hydrogen shifts. with a distal C14–C15 double bond. Cation-mediated double-
In the present paper, we report the results of density annulation proceeds smoothly to form a bicyclic tertiary cation
functional theory (DFT) calculations on the quiannulatene intermediate (IM2), which undergoes 1,5-hydrogen transfer
biosynthetic pathway, as compared with sesterfisherol reaction to give a more stable internal allyl cation intermediate

Accepted Manuscript
biosynthesis. The aims of the study are as follows: (i) to uncover (IM3a) with a very small activation energy. After the
the whole reaction pathway of the exquisitely controlled multi- conformational change of IM3a to IM3b with an activation barrier
step biosynthetic carbocation-cascade reactions leading to of 6.2 kcal mol-1, the E-ring (C6–C10) cyclization proceeds to
quiannulatene; (ii) to investigate the reaction mechanism of the give a 5/12/5 tricyclic intermediate (IM4) with a stabilization
skeletal rearrangements that afford the complicated, chiral, energy of 9.0 kcal mol-1. This is an important branching point in
congested, polycyclic structure; and (iii) to analyze the sesterterpene biosynthesis: 1) in astellatene2h and
2i
stereochemistry of each intermediate and to identify the arathanadiene biosynthesis, C2–C12 bond (B-ring) formation
determinant of entry into the biosynthetic pathways leading to proceeds preferentially to give 5/6/11 tricyclic intermediates at
5/6/5/5/5 (quiannulatene) and 5/6/4/6/5 (sesterfisherol) penta- this stage, whereas 2) C6–C10 bond (E-ring) formation
cyclic skeletons. proceeds selectively to give the 5/12/5 tricyclic intermediate
(IM4) in sesterfisherol biosynthesis. Our calculation clearly
shows that E-ring (5/12/5 tricyclic skeleton) formation proceeds
preferentially by 3.0 kcal mol-1 in activation energy compared to
B-ring (5/6/11 tricyclic skeleton) formation in quiannulatene
biosynthesis (Figure S2). It would be interesting to discover the
determining factor that regulates this pathway branching, and
the information would also be helpful for engineering
sesterterpene TCs (vide infra).
Subsequently, two successive 1,2-hydrogen shifts occur to
generate allylic cation intermediate (IM6). IM6 has five
conformers within ca. 4 kcal mol-1, since the 12-membered ring
is quite flexible. After multiple conformational changes of IM6b
into IM6e with small activation barriers, the C2–C3 p bond in
IM6e approaches the cation center to undergo B-ring formation
to give the tertiary cation intermediate (IM7). Cyclobutane ring
formation next takes place to yield a 5/6/4/6/5-pentacyclic
intermediate (IM8) with a very small activation energy barrier. At
this cyclization step, we could also locate another type of
annulation pathway affording a 5/6/5/5/5-pentacyclic
intermediate, as seen in sesterfisherol bio-synthesis. The details
of this regioselectivity will be discussed later. From IM8, skeletal
Scheme 2. Comparison of the proposed biosynthetic pathways of rearrangement takes place via a non-classical carbocation
quiannulatene and sesterfisherol via a 5/6/8/5 tetracyclic intermediate. transition state (TS_8-9a) with very low activation energy (4.6
kcal mol-1) to give another bridgehead tertiary cation (IM9). After
a conformational change from IM9a to IM9b, two sequential
The full reaction pathway for the conversion of GFPP to IM11 skeletal rearrangements via non-classical carbocation transition
and the relative energies to IM1 are shown in Scheme 3 and states give a triquinane intermediate (IM11). IM11 is at least 10
Figure 1, respectively. The energy diagram (Figure 1) kcal mol-1 more stable than IM8, owing to the different strain
immediately suggests that this is a thermodynamically and magnitudes of the multi-cyclic ring systems. Finally,
kinetically favorable biosynthetic reaction cascade: 1) activation deprotonation affords the product, quiannulatene.
barriers are all low enough for the reactions to proceed smoothly This work also revealed the full stereochemistry of IM11. Unlike
at ambient temperature (no steps with individual barriers greater the terpene-forming reactions we have previously reported,8,12,13
than 10 kcal mol-1), 2) the entire energy profile descends as the in which the termination step is hydroxylation, quiannulatene
reactions proceed, and 3) the overall exothermicity is very large biosynthesis ends with deprotonation to afford an olefin.
(nearly 50 kcal mol-1). The E-ring formation (C6–C10 bond Consequently, the stereochemistry of the C2 position is
formation) process (TS_3b-4) or the conformational change experimentally inaccessible. Thus, both possibilities were

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Accepted Manuscript
-1
Scheme 3. Whole biosynthetic pathway of quianulatene. Potential energies (kcal mol , Gibbs free energies calculated at the mPW1PW91/6-31+G(d,p) level
based on B3LYP/6-31+G(d,p) geometries) relative to IM1 are shown in parenthesis. IM stands for intermediate. TS stands for transition state.

-1
Figure 1. Energy diagram of the quiannulatene biosynthetic pathway. Potential energies (kcal mol , Gibbs free energies calculated at the mPW1PW91/6-
31+G(d,p) level based on B3LYP/6-31+G(d,p) geometries) relative to IM1 are shown in parenthesis.

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examined computationally. The results clearly show that IM11 energy. This detour pathway appears to be necessary to set
has a hydrogen at the C2 position; this is the opposite up the molecule in an appropriate conformation for further
stereochemistry to that previously proposed (Figure S1). If skeletal rearrangement. Tantillo has reported seminal
IM11 had b hydrogen at the C2 position, the GFPP would theoretical studies on the formation of several kinds of
need to have had a (Z) C2–C3 double bond. As we used triquinane skeleton, such as a-isocomene,14 modhephene,14
GFPP with a (E) C2-C3 double bond, IM11 should have a a-terrecyclene14 and pentalenene,15 which are all C15
hydrogen at the C2 position. sesquiterpenes. The 5/5/6-type tricyclic skeleton in
IM9a/IM9b is also seen in a-isocomene and a-terrecyclene
(a) (b)
biosynthesis, but the reaction mechanism is slightly different
H H H H
from that of quiannulatene.

Stereochemical Analysis. We next studied in detail the


H H
conformation of the intermediary diastereomeric 8-membered
H H ring (Figure 2, quiannulatene: conformation A, sesterfisherol:

Accepted Manuscript
Quiannulatene
cis-fused B/C ring
Sesterfisherol
trans-fused B/C ring
conformation B). Interestingly, when IM6 in quiannulatene
(c) (d)
biosynthesis is artificially fixed in conformation B (albeit this is
thermodynamically unfavorable by ca. 2.3 kcal mol-1 over
conformation A), 5/5-membered ring formation proceeds
smoothly to give a sesterfisherol-type 5/5/5-triquinane
structure (Scheme 5b). Likewise, when the corresponding
intermediate in sesterfisherol biosynthesis is changed to
Conformation A Conformation B conformation A, 4/6-membered ring formation proceeds to
form a quiannulatene-type 5/5/6-type tricyclic skeleton
Figure 2. The 5/6/8/5 tetracyclic skeletons of quiannulatene and (Scheme 5c); however, this pathway needs an activation
sesterfisherol. (a) 2D structure of quiannulatene (b) 2D structure of
sester-terfisherol (c) 3D structure of quiannulatene (d) 3D structure of
energy of 26.6 kcal mol-1 and appears not to be viable under
sesterfisherol. ambient conditions. This simulation computation implies that
skeleton formation is influenced by the conformation of the
intermediary 12-membered ring resulting from the
Rearrangement Mechanism Leading to Triquinane stereochemistry of the 5/12/5 tricyclic intermediate. It appears
Skeleton. In our previous study, we proposed that skeletal that the stereochemistry of the right part of the molecule
rearrangement from IM8 to IM11 occurs as a single event via regulates the structure of the left part in the sesterterpene
only two alkyl shifts (scheme 4, path b). However, the present biosynthesis. However, these results raised a new question
calculations revealed that the triquinane structure formation as to what determines the stereochemistry.
requires two more skeletal rearrangements and one more
conformational change (scheme 4, path a). This mechanism
appears to be very complicated, but it is energetically viable,
since all the steps require less than 6 kcal mol-1 activation

Scheme 4. Rearrangement reaction mechanisms. Path a: newly discovered pathway in this study, including four alkyl shifts and one conformational change.
path b: previously proposed pathway, including two alkyl shifts.

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H
(a) conformation A H H H H H
7 6
H H
H
5 3 barrierless
4 H H

H 2.3 kcal/mol 5/5/6 type Quiannulatene


7
favorable
6
H
5

4 3
H H H H
ΔG‡ = 6.3 Not isolated
6 4 H
7 3 H
(b) conformation B 5 H H

5/5/5 type triquinane

(c) conformation A

Accepted Manuscript
H H H H
7 ΔG‡ = 26.6 Not isolated
H
6 H
5
3 H H
4
H
7 5/5/6 type
6
H 2.3 kcal/mol
5
favorable
4 3
7 H H OH H

6 H
(d) 5 H
barrierless
conformation B 4
3
H H

5/5/5 type triquinane Sesterfisherol

Scheme 5. The effect of conformation on triquinane skeleton formation. (a) Quiannulatene original pathway (conformation A) (b) Quiannulatene swapped
pathway (conformation B) (c) Sesterfisherol original pathway (conformation A) (d) Sesterfisherol swapped pathway (conformation B).

Initial Conformation Analysis. We then focused on the initial olefination to afford quiannulatene16 and so on. In addition,
conformation of GFPP, especially the orientation of the methyl based on our study, it appears that EvQS controls the regio- and
groups on the double bonds (Figure 3b). Comparing the stereochemistry by fixing the initial conformation of GFPP, which
stereochemistry of the five double bonds of GFPP between determines the fate of the carbocation-stitching cascade,
quiannulatene and sesterfisherol, two of them are facing in the including multiple ring formations and skeletal rearrangements
same direction, whereas other three are facing in the opposite that in turn elegantly determine the regio- and stereoselectivity.
side (Figure 3a). GFPP does not have any polar functional Further studies on how TCs fix GFPP by means of theoretical
groups except for the pyrophosphate moiety, so it is of interest calculations and X-ray crystal structural technique are in
to know progress. We believe the present work provides a theoretical
basis for designing new synthetic methods and strategies to
construct medium- to large-sized rings in a controllable and
diversified manner.
The current computational study has clarified the whole
biosynthetic route to quiannulatene. DFT calculations reveal that
the core framework of quiannulatene is constructed via a
tandem carbocation cascade, involving construction of several
rings, hydrogen-shifts, and skeletal rearrangements. Such a
reaction cascade provides high efficiency and selectivity, and is
well supported by the experimental results. There are several
branching points in sesterterpene biosynthesis, in which the
stereochemistry and conformation regulate the successive
tandem carbocation cascade. Furthermore, we elucidated the
complicated rearrangement pathway/mechanism (IM8-IM11)
Figure 3. Initial conformation of GFPP in each biosynthetic pathway. (a) leading to the triquinane skeleton, which involves four alkyl shifts
Comparison of the 3D structure of IM1 for quiannulatene (left) and and two conformational changes. An in-depth mechanistic study
sesterfisherol (right). (b) I, II, III, IV represent the direction of the methyl groups.
on quiannulatene and sesterfisherol biosynthesis indicated that
V represents the direction of the isopentenyl moiety.
the initial conformation of GFPP controls the fate of the
carbocation-stitching cascade, including ring formations and
skeletal rearrangements that in turn determine the regio- and
how TCs fix the initial conformation of GFPP. TCs have several
stereoselectivity. We believe this work provides a theoretical
roles and functions, such as dissociation of diphosphate from
GFPP, protection of reactive cation intermediates, deprotonative

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Angewandte Chemie International Edition 10.1002/anie.201807139

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Hajime Sato*, Takaaki Mitsuhashi, Mami
Yamazaki, Ikuro Abe* and Masanobu
((Insert TO Graphic here)) Uchiyama*

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Computational Studies on
Biosynthetic Carbocation
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Rearrangements leading to
Quiannulatene: Initial Conformation
Regulates Biosynthetic Route,
Stereochemistry, and Type of
Skeleton

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