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Top Catal (2009) 52:431–443

DOI 10.1007/s11244-008-9178-9

ORIGINAL PAPER

Molecular-Level Characterization of Heterogeneous Catalytic


Systems by Algorithmic Time Dependent Monte Carlo
N. Armata Æ G. Baldissin Æ G. Barone Æ R. Cortese Æ
V. D’Anna Æ F. Ferrante Æ S. Giuffrida Æ G. Li Manni Æ
A. Prestianni Æ T. Rubino Æ Zs. Varga Æ D. Duca

Published online: 30 January 2009


 Springer Science+Business Media, LLC 2009

Abstract Monte Carlo algorithms and codes, used to 1 Introduction


study heterogeneous catalytic systems in the frame of the
computational section of the NANOCAT project, are pre- The study of heterogeneous catalysis can be significantly
sented along with some exemplifying applications and improved by modelling the catalytic reaction processes
results. In particular, time dependent Monte Carlo methods through the consideration and rationalization of the simple
supported by high level quantum chemical information elementary events, taking place at molecular-level on the
employed in the field of heterogeneous catalysis are catalyst surface and at the interface. In this aim, nowadays,
focused. Technical details of the present algorithmic Monte computational and simulation approaches, both in the
Carlo development as well as possible evolution aimed at a deterministic and stochastic paradigm frameworks, are
deeper interrelationship of quantum and stochastic methods usually taken into consideration to support the explanation
are discussed, pointing to two different aspects: the ther- of experimental results, to find simple representation of
mal-effect involvement and the three-dimensional catalytic microscopic aspects and to design material structure and
matrix simulation. As topical applications, (i) the isother- reaction mechanism to be employed in catalytic processes.
mal and isobaric adsorption of CO on Group 10 metal The recent and constant evolution of both hardware and
surfaces, (ii) the hydrogenation on metal supported cata- software has promoted the development of in silico (i.e.
lysts of organic substrates in two-phase and three-phase computation and simulation of natural or laboratory)
reactors, and (iii) the isomerization of but-2-ene species in chemical applications, hence molecular-level systems also
three-dimensional supported and unsupported zeolite in catalysis and surface chemistry fields can be now simply
models are presented. faced [1, 2].
Time dependent Monte Carlo (tdMC) algorithms [3, 4]
Keywords Algorithmic Monte Carlo  tdMC  have been designed and employed, as many other equi-
Surface processes  Heterogeneous catalysis  librium and nonequilibrium Monte Carlo (MC) and
Catalytic reaction modelling Cellular Automata approaches [5], to adequately simulate
kinetic details and reaction mechanisms of heterogeneous
catalytic systems, in the aim to obtain (i) dynamic results
G. Baldissin  G. Barone  R. Cortese  V. D’Anna  fully comparable with those of corresponding experimental
S. Giuffrida  G. Li Manni  A. Prestianni  T. Rubino  systems and, when possible, (ii) hints on experimental
Zs. Varga  D. Duca (&) aspects not yet investigated [6, 7]. The catalysis oriented
Dipartimento di Chimica Inorganica e Analitica ‘‘S.
tdMC algorithms, mainly employed in the simulation of
Cannizzaro’’, Università degli Studi di Palermo viale delle
Scienze Ed. 17, 90128 Palermo, Italy hydrogenation processes, have been derived from the Ziff–
e-mail: dduca@cccp.unipa.it Gulari–Barshad (ZGB) code [8], originally introduced to
study the CO oxidation on metal surfaces, by including
N. Armata  F. Ferrante
‘‘real-time’’ dynamic functions. The latter allowed us to
Dipartimento di Chimica Fisica ‘‘F. Accascina’’, Università degli
Studi di Palermo viale delle Scienze Ed. 17, 90128 Palermo, evaluate with the steady-state also the big-bang system
Italy properties [9–12]. With respect to this, it has to be stressed

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that the tdMC algorithms are not based, as the kinetic MC provide structural and energetic information to be used in
ones [13, 14], on the dynamic interpretation of equilibrium setting the event probabilities, whilst the tdMC code pro-
results [15] but instead constitute non-equilibrium exam- vides the dynamic engine bringing forward the simulative
ples of algorithmic [16] and true-dynamic [17] MC process hence mimicking the experimental processes.
approaches. The present application fields concern the CO The qc-based probabilities are often derived from a large
adsorption/desorption processes on Group 10 metal sur- number of simple elementary systems, designed to better
faces [5], the hydrogenation of unsatured hydrocarbons and encompass the whole set of possible events in the reactive
hydrocarbon mixtures [6–10, 18] as well as the hydroge- process. Therefore, specific local events are described with
nation of nitro-derivatives [19] on metal surfaces and the a high level of accuracy, and the approach is developed on
but-2-ene isomerization on unsupported or metal-supported a fully molecular-level base, revealing the inmost details of
H-ZSM-5 zeolite catalysts. Each of these topics are dis- the process and suggesting criticisms to results obtained by
cussed in Sect. 3. more conventional modelling approaches [5, 19].
The tdMC algorithms have been built by the consider- In fact, the algorithmic tdMC models have been applied
ation of characteristic sets of simple elementary events, on in energetics, thermodynamics, and kinetics studies. The
the whole defining the macroscopic processes by molecular approach resulted very effective in reproducing and pre-
details. A primary role has been given to the local steric dicting experimental properties and at the same time in
hindrance that accounts for the lateral interactions of the suggesting molecular-level reaction mechanisms for the
surface species. Noteworthy, the steric hindrance has corresponding macroscopic processes. It was also very
always shown to be able to drive the surface and interface useful in studying complex phenomena as bifunctionality,
elementary events involved in the simulated catalytic particle size effects, and different surface reaction condi-
processes. In the tdMC simulations, adsorption/desorption tions, e.g. due to by-products and carbonaceous species
and diffusion phenomena of the single species have been formation. In particular, as already mentioned, the side
considered along with the proper reactive processes and the interactions of the adsorbed molecules and the related
null event [6, 7]. Each of these elementary steps, including steric hindrance have been demonstrated to be of crucial
the null event, is characterized by an occurrence proba- importance in the definition of the main properties of the
bility, which might be derived either from experimental or surface systems.
from quantum chemical (qc) calculation findings. Like- Summarizing, the tdMC codes were used both for ana-
wise, also the interactions between the various species lysing two-phase and three-phase systems, showing that the
adsorbed on the surface sites are characterized by adequate catalyst properties strongly depend on: (i) the local char-
residence probabilities [5, 9, 10], which account for the acteristics of the surface sites, (ii) the surface population
steric hindrance of the adsorbed surface derivatives. Due to distribution, (iii) the formation of characteristic surface
local interaction-potential changes, the surface-event decorations and (iv) the onset of surface temperature gra-
occurrence probabilities are usually variable at the same dients. In passing, it has to be recalled that the catalytic
time as the system is evolving. The tdMC codes automat- properties shortly outlined by the points above could
ically face the parameter adjustments while with the proper dynamically change along the reaction that, as shown by
evaluation of the occurrence and residence probabilities, point (iv), also depends on the energy redistribution ability
the surface populations and the energetics of the system are of the system.
continuously monitored, allowing one to modify the sur- In particular, with respect to the latter point, the avail-
face characteristics, which can be easily related to the able surface energy (ASE) hypothesis, which has given a
modelled catalyst activity and selectivity. new molecular-level information to two-phase and three-
However, the ‘‘experimental‘‘ probabilities are generally phase reactions, was parameterized and used in the analysis
derived from fitting procedures, performed through the of surface and interface elementary events through the
same tdMC codes, on connected experimental data. tdMC models [9, 10, 22]. Within this hypothesis the dis-
Straightforwardly, this method might require the consider- tribution of events in the neighbourhood of a specific site
ation of a huge amount of fitting parameters with respect to would determine variable ASE and consequently a differ-
the number of the investigated catalytic properties. On the ent behaviour for the various configurations found in the
contrary, the application of qc information, in determining different surface sites. The knowledge and control of the
the occurrence probabilities, grants a substantial reduction ASE distributions could therefore give important feedbacks
of the number of arbitrary parameters, allowing for (i) a for driving the surface energetics and the surface reactive
more self-consistent evaluation of the inferred catalytic properties, and could result useful to develop real-time
mechanisms and surface species properties and for (ii) the models of surface events [5].
study of systems whose experimental parameterization is The algorithms are illustrated in the following Sect. 2,
lacking [20, 21]. In this approach, the qc calculations dealing in Sect. 2.1 with the architecture of the tdMC codes

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and the principles employed to build them. In this section parameters, by introducing qc information concerning the
are also described (i) the physical laws, mostly character- elementary events, dealing with the whole macroscopic
izing the thermal tdMC (T-tdMC) codes that have been processes. For the qc calculations the Gaussian03 suite of
employed to simulate the local energy exchanges taking programs [23] has been mainly utilised, by employing both
place along the occurrence of surface and interface pro- high level DFT methods and semi-empirical approaches
cesses, and (ii) the resulting energy gradients and [24]. The main subroutines constituting the codes are
concurrent flows present in the system. The following two common to the various algorithms, although specific pro-
Sects. 2.2 and 2.3, are focused on the modelling of three cedures have been employed for simulating peculiar
dimensional structures and catalytic reaction mechanisms. characteristics of the different real systems considered.
In details, in Sect. 2.2 the algorithms employed to build 3D
material structures are presented, whereas in Sect. 2.3 the 2.1 tdMC Codes
integration of the 3D building and managing procedures
into the tdMC algorithmics is discussed and the general The tdMC codes have been employed in modelling surface
applications illustrated by a flow-chart. In Sect. 3 some and interface processes in two-phase and three-phase sys-
exemplifying tdMC simulations are presented, showing the tems. In details, isothermal and isobaric, two-phase
ability of such approaches in studying: continuous-flow and two-phase or three-phase batch reac-
tors have been modelled. The catalytic phase was usually
• the adsorption/desorption processes of carbon monox-
modelled by two-dimensional matrices whose elements
ide under variable thermal conditions—Sect. 3.1,
represented surface sites. The two-phase continuous-flow
• the origin of well known exotic phenomena related to
systems have also been modelled by four-dimensional
the surface adsorption and catalytic oxidation of carbon
matrices with every matrix element representing a 3D unit-
monoxide—Sect. 3.1,
cell of a metal crystallite, containing local energy
• the two-phase hydrogenation of unsaturated hydrocar-
information.
bons—Sect. 3.2,
In any case, the event occurrences and the simulation of
• the three-phase hydrogenation of aromatic nitro-deriv-
the surface reaction have been up to now restricted to a 2D
atives—Sect. 3.3,
matrix, representing the crystallite surface. Despite that,
• the two-phase isomerization of but-2-ene on 3D
the consideration of 2D surface matrix allowed us to per-
matrices—Sect. 3.4.
form surface simulations involving 3D effects as those
Developments of the tdMC codes are finally discussed in related to the catalytic metal dispersion and to the geo-
the conclusive Sect. 4. metrical location of the active-sites (i.e. surface-, edge- and
corner-sites) and of the crystallite defects [10]. Although
very reliable, these approaches have some disadvantages,
2 Methods and Algorithms needing non-physical and somehow obscure technical
treatments to introduce the 3D effects [10] hence pre-
The deterministic modelling of heterogeneous catalytic cluding the simple use of the code to the ‘‘experimental-
systems as well as of surface and interface transformations minded’’ researcher interested in the application of simu-
requires preliminary information on the surface site prop- lation methods. Moreover, the dynamic simulation on 2D
erties and on the surface species configurations, related to surface matrix is constrained in two dimensions without
the attribution of starting boundary conditions. At variance, considering either the bulk diffusion or the confinement
the stochastic modelling approaches, as the MC ones, effects. In Sect. 2.3 the extension to simulated 3D systems
applied to the same surface fields are able to overcome is discussed.
some of these drawbacks, simply defining starting ele- All the molecular events, and more generally any ele-
mentary events occurring on the surface or at the interface, mentary act that needs stochastic choices, are driven by a
as the molecular hitting, sticking, desorption, diffusion and portable Random Number Generator, namely the ranN or
reaction with the formation or removal of radicals, by- the ran0s subroutines taken from the Numerical Recipes
products and polymeric species and carbonaceous deposits. [25, 26]. Different starting seeds have always been
In any case the use of stochastic approaches preserves the employed for each different event considered. The occur-
possibility to include deterministic events, when needed. rence probability for a given event depends on many
MC simulations have been performed by home-made variables: the system temperature and pressure, the number
FORTRAN and/or ANSI C codes in the frame of the of surface sites, the surface population and the distribution
NANOCAT project, running on Linux operative system on of the reagents in the different phases, the activation energy
x86 or ia64 cluster architectures. The codes have been (Ea) of the simulated event, and the steric hindrance of the
designed to minimise the number of the involved variable species on the surface. The event frequencies and

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probabilities can also change following the energy gradi- H, and of the residence probability, Pq ðxÞ: F is dinamically
ents, evaluated through the thermal conductivity and the updated by the tdMC code and has not a constant form,
thermal radiation laws [5]. The steric hindrance and the because of the different dependence of the molecular
lateral interactions of the surface species has recently been surface diffusion and desorption on H. This equation has
evaluated in terms of interaction probability, PI, or resi- been obtained by setting in the TST expression the
dence probability, Pq : As an example, the latter was partition-function ratio and the transmission coefficient to
calculated as: 1 [5]. The effect of the diffusion, on otherwise highly
  activated surface processes, is almost null while it could
Eaq ðxÞ
Pq ðxÞ ¼ exp m ¼ ½pq ðxÞm ð1Þ be considered as a molecular surface population mixing,
kB T
not changing the average population distributions on
in the hypothesis that only species of x type were on the the surface. In these cases, pseudo-steady-state surface
surface. In Eq. 1, Eaq ðxÞ is the activation energy needed populations are often observed. The sticking probability of
to bring in contact two neighboring species, m is the given species could be calculated as:
number of the neighboring couples while pq ðxÞ is the rx ¼ Px ðEÞFðH; Pq ðxÞÞ ð3Þ
probability that two molecules are neighboring-neighbors.
The dependence of the residence probability from the where Px(E) is the probability that a hitting, x, molecule
temperature allows to infer that the local surface popu- owns an energy amount, E, having a value in-between the
lation could increase with the increasing of the local adsorption and the desorption energies for the same mol-
surface temperature, in agreement with the Thon and ecule on the surface. The E values are Maxwell–Boltzmann
Taylor equation [27]. Moreover, an explicit dependence distributed energies, depending on the temperature. The E
on the coverage and the temperature could be formally values have been evaluated by using the qtrap subroutine,
employed to modulate the activation energy of the above taken from the Numerical Recipes [25, 26].
equation, to take in account the eventual compensation The time step, Dt, is a driving factor in the tdMC sim-
effects arising at high coverage, which could modify the ulations, which in the title codes is anchored to the
Eaq value [28–31]. frequency of the fastest event, fE, determined automatically
The kinetic theory of gases has been utilised to calculate during the simulations. In the latter, Dt ¼ CfE1 ; where C is
the hitting frequencies of gas-phase reagents in the two- a term calculated so that the sum of the event occurrence
phase systems. It has to be stressed that the hit event probabilities, including the null event, is normalised to 1.
occurrence is used to start the internal clock, to account for Consequently, the Dt values change as the considered
the simulated dynamic properties and to monitor the physical process is changed and along the mimicking of a
elapsed simulation time. In the case of molecular hitting given system.
from the liquid phase on solid surfaces, characterizing the The total probability of the system, constituting the
three-phase systems, the Stokes–Einstein theory has been whole events sample-space (wss), is determined by the
considered [19] for the same purposes. When three-phase whole set of mutually independent events. Reduced sam-
batch reaction systems have been taken into consideration, ple-spaces (rss) [32] have been also introduced in the tdMC
the concentration changes occurring in the different phases algorithmics, considering only selections of events, having
have been mandatory whereas in the two-phase continuous- physical meaning within a given part of the simulation. In
flow systems the update of the number of molecules in the the various rss the simulation fastest event, and conse-
gas-phase was not necessary. quently its frequency value, is different and always smaller
The Maxwell–Boltzmann distribution law has been with respect to the fastest events of the unreduced space,
employed in computing the energetics of the surface hits thus determining larger simulation time steps that allow
and to calculate the variable sticking probabilities, which one to increase the range of simulated time and/or to
also depend on the surface population and energy distri- reduce the simulation length.
butions—see Eq. 2. Desorption, surface diffusion and The Fourier thermal-conductivity law, the Kirchhoff–
reactive event frequencies, hence the corresponding prob- Stefan–Boltzmann thermal-radiation law, the Drude–
abilities, were calculated through the modified transition Sommerfield model, and the equipartition theorem have
state theory (TST) equation: been used for the simulation of the catalytic systems
  involving the thermal treatment [5]. The corresponding
kB T Eag ðxÞ
feg ðxÞ ¼ exp  FðH; Pq ðxÞÞ ð2Þ T-tdMC codes, in the following considered to illustrate
h kB T
other rss details of the tdMC algorithmics, have included
where Eag ðxÞ is the activation energy of the considered, g, three rss to manage the physical models. The first rss is
event for the generic, x, species while F is a function of the constituted by the sample-space of hit, diffusion and null
occupied surface site molar ratio (i.e. the surface coverage), events, occurring the other events only after a hit of the

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surface. This is the case of sticking that could actually be less probable surface or interface events are opportunely
tried in a second rss, just after the molecular hitting managed into parallel rss, producing a jump of the simu-
occurrence. If sticking occurs, a third level rss is invoked. lated time [5, 19]. The time-jump procedure activated by
In the third level rss the adsorption activated processes, i.e. new event-chains can greatly improve the efficiency of the
diffusion and desorption, are considered. In the second and code, without altering the final simulated results, by
third rss all the occurrence probabilities are conditional to reducing the large quantity of simulated time actually
the generating event, i.e. hit and sticking following hit, wasted along with the pseudo-steady-state occurrence.
respectively. If the generating event does not occur and
only diffusion or null events take place, or after any event 2.2 PMB and MCAE Codes
following the second and third rss, the code rearranges the
surface energy distribution, modulating the energy content The simulation of real 3D material structures represents an
of each crystallite unit-cell through an ordinary differential improvement in the tdMC algorithmics. Indeed, the use of
equation system (ODEs) approach, using the rk4 subrou- large 3D model framework allows one to take explicitly into
tine of the Numerical Recipes [25, 26], up to reach a consideration surface defects and/or confinement effects,
situation in which either the energy gradients are close to characterizing as an example space-embedding porous
zero or a previously set time interval is elapsed. This delay material, which are common in the surface-science and
depends on the starting parameters and on the energy heterogeneous catalysis field analysis. The subroutines and
gradients of the neighboring cells. The time contributions codes described here, useful to generate 3D matrices sim-
of the different parts of the code are kept synchronised by ulating heterogeneous catalytic material, have been
appropriate subroutines, which deal also with the correct implemented in ANSI C89 language and specifically
updating of the simulation time. Further details about the designed for the NANOCAT project. They have been tested
rss are reported in previous articles [5, 19] and in Sect. 3.1. in the but-2-ene isomerization process on H-ZSM-5 zeolite
All the tdMC simulations run up to reach steady-state catalysts, either bare or embedding small Pd clusters.
conditions, in which the surface characteristics, although In modelling large 3D systems, issues concerning the
dynamically variable, maintain homogeneous properties. regularity of the corresponding structures have been faced.
Straightforwardly, selectivity, activity or other discrete In fact, large porous structures cannot be considered com-
chemical and physical features can be evaluated both along pletely uniform and also in the very regular H-ZSM-5
the transient (big-bang-state) period needed to reach the aluminated matrices, a certain degree of randomness has to
steady-state and in the same steady-state conditions. For be taken into account. As an example, the Si $ Al substi-
this reason, the code monitors systematically the occur- tution, although mainly occurring on given sites within the
rence of true steady-state conditions, ending the simulation structure [38], could in principle take place in very different
when they are achieved. During the simulations the system locations. Moreover, when metal clusters are embedded in a
always reaches locally oscillating situations that in real porous matrix, their distribution is not always regular, and
steady-state are mostly caused by hitting and sticking the metal deposition processes yield more or less randomly
immediately followed by desorption. This phenomenon, distributed supported materials, although also in this case
studying the carbon monoxide adsorption on Group 10 some sites are preferred (e.g. those nearby the acidic sites in
metal crystallites has suggested a molecular explanation for aluminosilicate systems) [39].
the adsorption-assisted-desorption (AAD) effects [33–36], This lack of regularity could be bypassed when small
discussed in Sect. 3.1. fragments of the whole structure are mimicked. In fact, the
The codes can also identify the occurrence of a pseudo- model could be considered as a particular of a possible
steady-state in which only diffusion events are occurring, structure or rather as the most stable among a possible set
even in conditions quite far from the real dynamic surface of structures. However, the models needed for the large
equilibrium, i.e. at the real steady-state of the system, and scale 3D-tdMC simulation, e.g. to be used in mimicking
lead just to molecular surface population mixing, intrinsic confinement effects, should span thousands of atoms. In
of the diffusion events [5, 19]. The surface properties thus these conditions the assumption of structural regularities
become uniformly monotonic and, in agreement with the could introduce errors on the evaluation of the macroscopic
random parking model [37], the only visible effect is the properties, e.g. considering the most stable surface sites
reaching of a homogeneous molecular surface redistribu- among a whole distribution of sites or considering periodic
tion, clearly determined by the relative molecular residence boundary conditions (PBC) that clearly introduce a certain
probabilities of the different surface species. degree of regularity in modelling amorphous structures.
This temporary state could be ruled out by forcing a Therefore, a new code was designed to overcome these
redistribution of the surface species, usually originating less drawbacks, with the specific task to build 3D regular, and
hindered surface configurations. In these new conditions, even non regular, porous structures. The code is able to

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shape whatever material matrix is necessary in the tdMC code up to reach the selected size of the simulated model.
simulations, on the basis of the information provided by the Along this procedure, structural irregularities can be
users on the composition hence on the structure and mor- introduced by stochastic or deterministic procedures. The
phology of a given material, either real or just radius of gyration of the involved chemical group has been
hypothesized. The Porous Matrix Builder (PMB) algorithm usually taken as the main parameter for the characterization
was for this purpose implemented as a stand-alone code of the material and its defects, giving the structure reso-
and also as a subroutine of the 3D-tdMC package. lution. The code can thus model from extremely regular
In our opinion, the speed-up of the tdMC simulative systems to true amorphous material at a very limited
approaches with an algorithm providing the starting space- computational cost. In order to perform the stochastic
embedded material model matrices, without the manual changes in the regular structure matrices, the PMB
modifications of each simulated system, already justifies algorithm has been linked to a Monte Carlo subroutine,
the efforts for the algorithm design and the code develop- able to change either the composition or the structure of
ment. In the PMB algorithm the three-dimensional systems the considered material—MC atom exchanger (MCAE)
are reduced to 3D matrices in which every element repre- subroutine. Examples of PMB-MCAE applications on
sents an ‘‘elementary-site’’, that can be occupied by void or different material representations are shown in Fig. 2.
filled space, in the latter case by one of the different con- MCAE code modifies at a very low computational cost,
stituents of the system (reagents, intermediates, products, an already built 3D material matrix by a stochastic engine
catalyst sites, inerts, promoters or poisons). These 3D using the ranN subroutines [25, 26]. Since MCAE has to
matrices are mathematical objects directly usable in any deal with the same grain produced by PMB, it has been
implemented algorithmic MC code designed for studying implemented only as a subroutine of the former code. As
either surface-science or heterogeneous catalytic systems. the tdMC codes described in this paper, MCAE is driven by
Of course, they represent the starting systems treated by occurrence probabilities managing elementary events that
following tdMC simulations—see next section. could be calculated referring to growth potentials, charac-
It has to be underlined that the matrix builder is oriented terizing metal deposition and by-product or poison and/or
toward a molecular-level approach. The sizes of the ele- promoter formation [18]. MCAE has been used also to
mentary-site pointed out by a matrix element are kept modulate the number of the Al-substituted sites in the H-
variable, so the generated models can be tuned on the ZSM-5 zeolite matrices, used to model the but-2-ene
specific MC simulation needs, and an elementary-site could isomerization described in the next section, and to drive the
represent one atom or a specific assembly of larger atomic growth of the metal clusters inside or outside given mate-
groups. In the presented H-ZSM-5 zeolite case, the grain rial cavities. Figure 3, as an example, shows a Pdn/H-ZSM-
unit of the material has been chosen to correspond to the 5 fragment obtained by the PMB-MCAE code, the linear
radius of gyration [40] of the 1T unit, i.e. the tetrahedral size of a single site being comparable with the radius of
silicate or aluminate building block of the zeolite material gyration of the zeolite T unit [41].
[41]. In Fig. 1 examples of H-Y and H-ZSM-5 zeolite
structures are shown. 2.3 3D-tdMC Codes
The PMB code reads experimental and/or computational
structural information and builds the material model by The 3D simulation has been performed, without thermal
arranging the basic information above. This is used by the treatment, using a code similar to those discussed in Sect.

Fig. 1 Examples of zeolite


structures built by the PMB
code: on the left a 1536T H-Y
model, with a grain (i.e.
elementary-site) resolution
(diameter) equal to 243 pm; on
the right a 96T H-ZSM-5 model,
with a grain resolution equal to
81 pm. The representation of
the two models are clearly not
in scale

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Top Catal (2009) 52:431–443 437

Fig. 2 Examples of amorphous


and defected crystalline
structures built by the PMB-
MCAE code; up and left: low
density porous polymeric
aggregate (number of
elementary-site 1004); up and
right: high density porous
polymeric aggregate (number of
elementary-site 2001); down:
simple-cubic-cell metal surface
obtained by randomly
removing, starting from the
ideal surface of the
corresponding cubic metal
crystallite, 498 of the initially
present 3375 elementary-sites

isothermal and isobaric cis/trans but-2-ene isomerization,


simulating a continuous-flow reactor. Details of the flow-
chart are given in the following, to show the main char-
acteristics of the first 3D-tdMC algorithm employed to
analyse catalytic processes.
The stochastic choices, represented by the subunit boxes
2 and 6 in Fig. 4, have been performed with the ran2
subroutine code [25, 26]. In the INPUT box the tempera-
ture and the hydrocarbon partial pressures are defined
together with the total time of the simulation (simulated
time), the activation energies, useful to calculate the event
occurrence probabilities, and the metal content. The
material characteristics, e.g. the room-surface organization
and the metal dispersion, are determined by the applica-
Fig. 3 Zeolite structure built by the PMB-MCAE code: 768T tions of the PMB-MCAE code, which is implemented as a
H-ZSM-5 (dark grey), containing 9% w/w Al sites (black), and 8% subroutine of the 3D-tdMC code (boxes 0). Subroutines in
w/w Pdn (light grey), the grain units of the different material components
almost correspond to the radius of gyration of the T zeolite unit box 1 calculate, from the INPUT information addressed by
the DRIVER, the maximum occurrence probability values
of the events on clean surface and state the optimized time
2.1 that included the application of the 3D system matrix. unit. This is the largest allowed starting time value for
A flow-chart of the 3D-tdMC code is shown in Fig. 4. This given simulated conditions, characterizes the starting wss
code has been preliminary tested on the chemical-regime of the system and is used to fix the initial sum of the event

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desorption or reactive but-2-ene isomerization events


(boxes 5 and 7), in this way going from the wss to the first
rss. The second rss is conversely reached if just hitting
diffusion and desorption take place, in going forward and
back from the wss to the first rss, for a previously fixed
number of times ð102  103 Þ: In the second rss just reac-
tive events are considered (boxes 5 and 7). Before facing
the first and second rss the surface molecules are always
adequately shuffled (box 6).
Following the occurrence of one of the events of the first
or the second rss, the simulated time is incremented as the
inverse of its occurrence frequency value, normalized to
the size of the mimicked surface, and the occurred event
book-kept, like for the wss, in boxes 8 and 9, respectively.
After the time jump, characterizing both the first and the
second rss, the time calculation procedure is restored to the
standard time. By this procedure, no information is lost
while the simulation time can be shortened of several
orders of magnitude and the simulated reaction time easily
gets values comparable to those of the experimental reac-
tion time. In any case, following the occurrence of each
event the system upgrades the simulated time, registers the
information regarding the involved events, boxes 8 and 9,
and returns to the DRIVER box, which monitors the
elapsed simulation time and stops the code when the
steady-state or the total time to be simulated is reached.
Fig. 4 Simplified flow-chart of a 3D-tdMC code Finally, the code goes in sequence to the boxes OUTPUT
and END, hence collects the simulated results. The results
occurrence probabilities, including the null event, to the of the simulations, for example expressed as turnover fre-
value of one. quency (TOF) [6] taken at different simulation times, are
Along the simulation, knowing the details on the surface sent to the OUTPUT box. In Sect. 3.4 the results obtained
population and the actual time unit, the code randomly with this algorithm are discussed.
chooses one event from a comb of predefined events (hit-
ting, reaction, desorption, diffusion and null event) in
boxes 2 and 3. If adsorption (hit plus the conditional 3 Applications
sticking), reaction, desorption or diffusion occurred, the
code determines in which position of the surface the event In the following sections a summary of the main applica-
has happened and records the new surface population (box tions of the algorithmic tdMC approaches is given.
4). Of course, reaction, diffusion and desorption just occurs Technical details are omitted while the main simulation
for species already present on the surface and, conse- findings are shortly recalled. The simulated systems have
quently, the surface population must be modified every been chosen following (i) academic and technological
time they take place. On the contrary, the hit of a given significance, (ii) difficulty in the interpretation of experi-
species leads to surface changes only if some room is mental results and (iii) achievable hints in the investigation
present on the surface to give the following adsorption. of undisclosed surface properties.
Timing procedures, as seen above, are characterized by
routines which allow to switch among different rss, fol- 3.1 CO Adsorption on Group 10 Metal Surface
lowing the specific events occurring in the system, as
exemplified in Sect. 2.1. In the implementation of the The capability of the tdMC codes to model the adsorption
present 3D-tdMC two rss have been included. Indeed, once of simple molecules on the metal surface and to calculate
pseudo-steady-state conditions have been reached (i.e. the corresponding system properties under variable thermal
when at least 103  104 diffusion or hitting events per conditions has been tested by modelling the adsorption of
102  103 surface sites have serially occurred) the code the CO molecules on the surface of Group 10 metal crys-
skipped hitting and diffusion, restricting the choice only to tallites. The study has been in particular focused on the

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Top Catal (2009) 52:431–443 439

steric hindrance effects, whose interest arises both from 3.2 Hydrogenation of Ethylene and Acetylene/ethylene
experimental findings and qc calculations [42–44]. The Mixtures
IDEA code, presented as the first T-tdMC code, has been
specifically developed for this purpose [5]. Hydrogenation of ethylene and ethylene–acetylene mix-
IDEA have correctly reproduced the experimental tures on Group 10 metal catalysts is largely studied both for
results. In the performed simulations the steric hindrance the intrinsic experimental simplicity and for the large
values have been used as fitting variables, whereas the industrial applicability [47]. In particular, removal of
other parameters have been derived from qc calculations or alkynes from alkene-based feedstock by selective hydro-
from the literature. This allowed us to modulate the event genation is useful to prevent catalyst poisoning in
occurrence probabilities by the steric hindrance of the polymerization reactions [48], involving the same alkenes.
surface species configurations, using a reduced number of Different catalytic conditions have been taken into con-
fit parameters. sideration in the simulations of the ethylene hydrogenation
The steric hindrance effect has been evidenced by the [6, 7, 9], performed employing probabilities, referring to
dependence of the sticking probability from the surface experimental and/or calculated information, both for the
population ratio, decreasing the CO residence probability event occurrence and for the residence of the surface
values with increasing the same surface population. This species.
behaviour resulted dependent on the metal surface char- Ethylene hydrogenation results, obtained through
acteristics, pointing out the lowest CO steric hindrance on 2D-tdMC simulations on progressively more hindered
Pd, and the highest on Pt, being this order confirmed by surfaces, have pointed out the fundamental role of the
potential energy surface (PES) calculations [5, 44]. The steric hindrance parameters, which have been able to
tdMC simulations have thus explained the mechanistic explain the increasing catalyst activity along its use. This
basis involved in the surface steric hindrance effects, being occurrence can be ascribed to the reduction of available
also able to clarify related surface phenomena—see below. surface sites caused by the carbonaceous deposit buildup
In passing, it has also to be stressed that the T-tdMC IDEA [9, 10, 28]. The explanation rests upon the different
code allowed us to point out that the molecular steric reaction order (r.o.) characterizing the main reagents
hindrance induces on populated metal surfaces an activa- (r.o. [1 for hydrogen, r.o. *0 for ethylene) and the
tion energy also on adsorption processes, which usually are evidence that, on a hindered surface, ethylene population
considered as inactivated. decreases while hydrogen population slightly increases
Finally, mechanistic microscopic aspects related to the [18]. The tdMC simulations have given also an explain-
carbon monoxide adsorption on Group 10 metal surfaces ation of the existence of two reactive regimes in the
have been elucidated by the analysis of the tdMC findings. ethylene hydrogenation on Pt/silica catalysts, switching at
In particular special consideration deserves the hints given a critical temperature. In fact, taking into account the
on the interpretation of the hot-atom (HA) [45, 46] and the ASE concept, the activity jump was attributed to coherent
AAD phenomena, using the ASE concept [5, 9, 10, 22]. order–disorder transition promoted by a surface energiz-
ASE seems to play a fundamental role in regulating the ing effect, that causes reorganization of the spatial
carbon monoxide adsorption–desorption processes and on distribution of the H atoms [9, 49].
the whole in regulating surface and interface events, taking These are simple examples of the use of the tdMC codes
place in catalysis and in surface-science. in producing molecular-level explanation of seemingly
In particular, mimicking the CO on metal crystallite complex processes. Other tdMC applications of industrial
adsorption, IDEA has shown that the surface can not loose chemistry interest can be exemplified by the study per-
energy in-between two hitting events, when the pressure formed on the selective hydrogenation of front-end and
increases, raising both the bulk and the average metal tail-end feedstocks in isothermal and isobaric continuous-
crystallite temperature. In this case, adsorption immedi- flow fixed bed reactor. Also in this case the steric hindrance
ately followed by desorption is observed. This behaviour plays a fundamental role. Indeed, the tdMC simulations
straightforwardly illustrates the microscopic origin of the have shown that the same surface species behave either as
AAD phenomenon on the metal surfaces [33–36]. The HA promoters or as poisons, depending on the surface deposit
phenomenon seems instead to be related to the existence of amount and configuration [18]. The employed model was
surface temperature spots, locally produced by occurring designed to mimic the acetylene TOF and the selectivity to
surface-events. Neither the crystallite sizes nor the crys- ethane [28, 48].
tallite shapes play a critical role, but the opposite is true for In this catalytic system, different amounts of carbona-
the metal crystallite properties (e.g. the extension of metal/ ceous deposits, characterized by different steric hindrance,
gas-phase interface) able to dissipate energy and to deter- have been progressively incorporated on the simulated
mine local surface temperature spots [5]. metal supported catalyst, in this way modelling surface

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440 Top Catal (2009) 52:431–443

ageing phenomena. The simulated and experimental find- activation energy of the whole nitro-derivative hydroge-
ings have resulted in agreement both for the front-end and nation processes. Moreover, it showed that the parallel
tail-end mixtures, hypothesizing that given amounts of adsorption of the reactant molecules, with respect to the
surface sites were occupied by characteristically hindered surface, has a negligible influence on the product distri-
surface carbonaceous deposits. Interestingly, the acetylene bution, being the activity and selectivity patterns mainly
TOF value increased, if compared to that of ethylene, by controlled by the ratio between the two perpendicularly
decreasing the number of active catalytic sites. This is not adsorbed molecular configurations. Moreover, the catalyst
surprising and can be explained considering that the local morphology, namely the metal dispersion related to the
steric hindrance of the acetylene carbon atoms is smaller single surface species configurations, had a minor role with
than that of the ethylene carbon atoms. respect to the determination of the whole molecular dis-
The geometrical effects related to a specific activity of tributions. Hence, the determination of the catalyst activity
the catalyst sites, depending on the relative position of the and selectivity were explained [12, 19, 20] taking into
same sites in the catalyst particles, have also been studied. consideration, besides the system temperature and pressure,
However, the influence of the geometrical effects above the whole set of species involved in the different phases,
has been found less significant in explaining the connec- the size of the catalysts particles and the surface random
tions between the catalyst behaviour, toward activity and parking model [37].
selectivity, and the catalyst particle dispersion character-
istics, confirming that the surface decoration effects plays a 3.4 But-2-ene Isomerization on H-ZSM-5 Systems
fundamental role in driving the unsaturated hydrocarbon
hydrogenation on Group 10 metal surfaces [10, 18]. PMB and MCAE routines have been employed to simulate
a H-ZSM-5 zeolite matrix in 3D-tdMC studies. The reli-
3.3 Hydrogenation of Aromatic Nitro-Derivatives ability of the 3D-tdMC code has been tested in the but-2-
ene cis/trans isomerization processes. The zeolite models
The catalytic hydrogenation of 2,4-dinitrotoluene to were matrices containing up to 5000 alumino-silicate units.
2,4-diaminotoluene is an important industrial process, However the results here presented have been obtained by
fundamental for the toluene diisocyanate synthesis. This 2304T H-ZSM-5 system models. Along the simulation we
reaction is characterized by a complex mechanism, leading have not considered the formation of surface by-products,
to different products. From results obtained at a laboratory like polymer or carbonaceous deposits, or the formation of
scale in ethanol at a constant temperature and H2 pressure, multi-layers of adsorbed species. Nevertheless, these sur-
a dependence from the surface structure has been proposed face modifications can easily be introduced in the
for this mechanism, based on the presence of two different simulation model and their effects evaluated to test their
kinds of adsorption: parallel and perpendicular to the sur- influence on the whole process.
face [50]. The 2,4-dinitrotoluene hydrogenation was The value of the activation energy of the cis/trans
modelled by a dedicated tdMC code, designed for studying isomerization and the related probabilities have been
three-phase batch reaction on Pd/C catalysts at isobaric and obtained by qc calculations on a 22T model of Pd sup-
isothermal conditions [12, 19, 20]. ported and unsupported H-ZSM-5 fragments [51]. The but-
It was possible to define the role of all the molecular 2-ene adsorption/desorption activation energies and prob-
species both in solution and on the surface, taking into abilities have been also obtained by qc calculations on the
consideration three different types of adsorption, one par- same models and for the unsupported systems were inte-
allel and two perpendicular to the catalyst surface. Each of grated by information obtained on 52T H-ZSM-5 models
these types of adsorption has been assumed to hinder a [38]. The activation energy for the diffusion processes has
specific number of sites, allowing for mimicking the steric been calculated as a fraction, namely 20%, of the corre-
hindrance of every population distribution and configura- sponding desorption Ea value. The occurrence probabilities
tion on the catalyst surface. The hitting probability of the of hitting and sticking have been calculated as explained in
solvated species has been calculated by the Stokes–Ein- Sect. 2.1.
stein theory, considering the radius of gyration of the The event occurrence probabilities when needed have
different species in water/ethanol solution. The remaining been tuned with the residence probabilities, accounting of
probabilities have been evaluated as explained in Sect. 2.1. the corresponding steric hindrance terms and referring to
The production of water during the reaction did not affect values already used for similar hydrocarbon species [10].
the timing procedures [12, 19, 20]. The physical surface properties of the catalytic systems has
The simulations, based on preliminary qc information, been mimicked by normalizing to the number of active-
fully reproduced the macroscopic properties of the con- sites the values of the extensive variables and leaving
sidered system, giving a reliable evaluation of the unchanged those of the intensive ones. The tdMC

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Top Catal (2009) 52:431–443 441

0.25

0.20

0.15

θ
0.10

0.05

0.00
0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5
-5
10 t / s
Fig. 5 A snapshot of a 768T fragment of the unsupported 2304T H-
ZSM-5 model, during the 3D-tdMC simulation of the but-2-ene cis/ Fig. 6 First-instants partial surface coverage as a function of the
trans interconversion—gas-phase starting parameters: ptot bar, T = simulated time for cis-but-2-ene (filled circle) and trans-but-2-ene
360 K, vcis ¼ vtrans ¼ 0:5: Silicate sites are in dark grey, aluminate (open circle), occurring on a 2304T H-ZSM-5 model—gas-phase
sites in black, some but-2-ene molecules are evident in white, the starting parameters: ptot bar, T = 360 K, vcis ¼ vtrans ¼ 0:5
grain units of the alumino-silicate and of the hydrocarbon molecules
are about corresponding to the radii of gyration of the 1T and the
C2H4 groups, respectively 10.0

8.0
simulation has been carried out for even more than 10-3 s
of real-time (t), producing reliable results. A snapshot of a 6.0
ln(TOF)

reacting fragment of the system during the simulation of


the isobaric and isothermal process performed at a tem- 4.0
perature (T) equal to 360 K and a total pressure ptot equal
2.0
to 1 bar, with cis and trans gas-phase molar ratio (v) equal
to 0.5, is reported in Fig. 5. 0.0
The calculated values of TOF and Ea are in good
agreement with our chemical-regime experimental results -2.0
2.2 2.4 2.6 2.8 3.0 3.2 3.4 3.6
obtained at 1  2 bar and different starting reagent (but-1- -3
10 K / T
ene, cis-but-2-ene and trans-but-2-ene) partial pressure, in
the temperature range 303  363K; obtained in a continu- Fig. 7 Arrhenius plot, ln(TOF) vs. 1/T, for the but-2-ene isomeriza-
ous-flow reactor. tion occurring on a 2304T H-ZSM-5 unsupported system: cis ? trans
In Fig. 6 the ‘‘first-instants’’ (order of magnitude 105 s) (filled circle) and trans ? cis (open circle) processes—gas-phase
starting parameters: ptot bar, T = 360 K, vcis ¼ vtrans ¼ 0:5
surface population ratio, got by a simulation performed at
T = 360 K, ptot bar and vcis ¼ vtrans ¼ 0:5; is reported as a
function of the simulated time, the latter corresponding to shows the Arrhenius plot for the same system when 90% of
the real experimental time. Figure 6 shows just the first- the aluminated (acidic) sites are neighboring small (3  5
instants’ surface readjustments, in order to outline the atoms) palladium clusters. The covered temperature values
population ratio transient behaviour. Steady-state condi- range in-between 330–390 K.
tions have as expected been reached already within 10 ls The Arrhenius plots of both Figs. 7 and 8 show a correct
of simulation. The limiting value for the partial (i.e. linear trend both in the presence and in the absence of the
depending on a given species) surface coverage (h) has metal. To check this behaviour we extended to the, less
been found at h [ 0.20 both for the cis-but-2-ene and time-consuming, unsupported simulation systems the
trans-but-2-ene surface species. temperature spectrum analysis and always the linear trend
In Fig. 7 the Arrhenius plot, ln(TOF) vs. 1/T, of the cis/ has been found.
trans and trans/cis isomerization, corresponding to a The Ea values calculated for the isomerization processes
2304T unsupported H-ZSM-5 system with a 7% of alu- are reported in Table 1. Noteworthy, the activation ener-
minated sites, under cis-but-2-ene and trans-but-2-ene gies calculated from these plots are quite different from
partial pressure equal to 0.5 bar, is shown. The covered those of the qc evaluations and systematically higher. This
temperature values range in-between 285–420 K. Figure 8 behaviour is related to the involvement, in the tdMC

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442 Top Catal (2009) 52:431–443

planned, and new simulation with true qc-based diffusion


10.0
Ea values carried on.
8.0 Finally, the 3D-tdMC code simulations show its ability
to model the test process while the correction of the fun-
6.0 damental qc information employed should improve the
ln(TOF)

mimicked results. The code can be used to study a wide


4.0 range of reactions by changing the process basis input and
it should allow to obtain a very large output spectra, ade-
2.0
quately modulating the parameters of the system. In fact,
0.0 the here 3D-tdMC code is at present mainly targeted to
two-phase continuous-flow systems but extension of this
-2.0 approach to the study of two-phase and three-phase batch
2.5 2.6 2.7 2.8 2.9 3.0 3.1
-3 reactor processes is actually planned.
10 K / T

Fig. 8 Arrhenius plot, ln(TOF) vs. 1/T, for the but-2-ene isomeriza-
tion occurring on a 2304T H-ZSM-5 system embedding small Pd 4 Conclusion and Future Developments
(3  5 atoms) clusters (90% of the aluminated sites is interacting with
the metal clusters): cis ? trans (filled circle) and trans ? cis (open
circle) processes—gas-phase starting parameters: ptot bar, T = 360 K, The heterogeneous catalytic simulations by the tdMC
vcis ¼ vtrans ¼ 0:5 codes can be employed to analyse large sets of different
surface species and molecular-level events, occurring on
two-phase and three-phase systems in different reaction
Table 1 Activation energies characterizing the isomerization pro- conditions on 2D and 3D matrices, mimicking the physical
cesses of supported and unsupported palladium H-ZSM-5 fragments
properties of the involved catalytic materials. In addition,
Pdn/Al ratioa qc Eab MC Eac qc Eab MC Eac the use of T-tdMC approaches could help in explaining
cis ? trans trans ? cis
microscopic properties related to surface energy gradients.
The use of qc-tdMC simulations allows one to obtain
0.00 35.2 78.2 30.0 75.8
fully computational models taking into account local
0.10 – 82.0 – 78.2
information, regarding simple molecular events, and sys-
0.50 – 88.8 – 86.8
tem-wide information, regarding the whole reaction that
0.75 – 89.9 – 87.7
self-consistently emerge from the complex set of the
0.90 – 112.0 – 108.5
same molecular events. Through the use of qc calculations,
1.00 76.0 – 70.6 –
reliable results can be obtained without referring to
a
Palladium clusters (2  5 atoms) per aluminated (acidic) sites experimental approaches.
present in the modelled H-ZSM-5 fragments In any case, the algorithmic tdMC methods can be tested
b
The in vacuo qc Ea values, obtained by 22T H-ZSM-5 models, by the analysis of simulated and experimental results that,
must be considered as preliminary and refer, excluding the adsorp-
tion/desorption and diffusion steps, to the highest activation energy due to the characteristics of the described tdMC models are
values involved in the elementary surface processes of the cis/trans easily comparable.
isomerization paths, characterizing the supported and unsupported Future improvements of T-tdMC and/or 3D-tdMC
zeolite system algorithms are currently pursued for more realistic simu-
c
The 3D-tdMC simulation results are obtained on 2304T H-ZSM-5 lations of the experimental processes. The deepening of the
fragments at ptot = 1 bar and cis/trans isomer ratio equal to 1
mechanism of diffusive processes in the nano-structured
3D matrices is considered essential because the diffusion
simulations, of the diffusion and desorption events that are plays a basic role in explaining the apparent discrepancies
not taken into consideration in the qc approach. Interest- occurring among simulated and experimental findings. In
ingly, desorption and diffusion become more and more particular, onsets of diffusion, influenced by the steric
significant decreasing the size of the zeolite rooms for the hindrance of the surface derivatives, strongly affect the
presence of embedded metal atoms, as it is clearly shown reagent availability in local reactive surface environments,
by the cis/trans isomerization 3D-tdMC Ea values reported which could be also modified by molecular concentration
in Table 1. In any case, the evaluation of the diffusion and energy gradient effects.
contribution considered as a constant fraction of the Finally, Molecular Dynamics (MD) is at present con-
desorption Ea has to be refined in order to reproduce more sidered to mimic in details the gas-phase phenomena
realistically the experimental findings. Quantum chemical occurring above the interface, characterizing two-phase
calculations of surface molecular diffusion events are qc-3D-T-tdMC surface simulations. This would allow one

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Top Catal (2009) 52:431–443 443

to follow by the deterministic MD treatment the gas-phase J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Pet-
processes and by the three dimensional thermal quantum ersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R,
Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H,
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