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Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270

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Spectrochimica Acta Part A: Molecular and Biomolecular


Spectroscopy
journal homepage: www.elsevier.com/locate/saa

Investigation of mineralogical and bacteria diversity in Nanxi River


affected by acid mine drainage from the closed coal mine: Implications
for characterizing natural attenuation process
Jianwen He a, Wenxu Li a, Jing Liu b,⁎, Shu Chen a, Ray L. Frost c,⁎
a
The Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
b
The School of Resource and Environment, Southwest University, Chongqing 400715, PR China
c
School of Chemistry, Physics and Mechanical Engineering, Science and Engineering Faculty, Queensland University of Technology, 2 George Street, GPO Box 2434, Brisbane, Queensland 4001,
Australia

a r t i c l e i n f o a b s t r a c t

Article history: Due to the supply-side reform and environmental protection in China, many small coal mines have been closed
Received 18 November 2018 since 2015. However, acid mine drainage from these coal mines are continuously discharging into many rural
Received in revised form 16 March 2019 creeks, which requires the systematical investigation on the variations of geochemical and environmental biolog-
Accepted 18 March 2019
ical aspects in these water systems. In this study, from a classic acid mine drainage (AMD) from a closed coal mine
Available online 21 March 2019
of Hunan, China, various sediments and water samples in different sections were collected and analyzed. Accord-
Keywords:
ing to the corresponding Mineralogical and simple bacterial characteristics analysis (16S rRNA gene sequencing),
Closed coal mine the main findings were: 1) Secondary iron-containing minerals gradually transited from Gr(CO2− 3 ) (green rust),

Mineral-water interface Sh (schwertmannite) to Akg (Akaganeite) and more stable Gt (Goethite); 2) compared to the pristine sediment,
Mineralogy these minerals decreased the acid-neutralizing capacity and cation exchange capacity (CEC) of sediments;
16S rRNA 3) Proteobacteria and Firmicutes were the dominant phyla and the obvious variation of Firmicutes species was ob-
Natural attenuation served in the creek affected by AMD, which probably could been a biological index to diagnose the natural atten-
uation of AMD. These results could be greatly significant to understand typical variations of creek attenuation and
bacterial community in the presence of high metal and sulfate concentration.
© 2019 Published by Elsevier B.V.

1. Introduction These minerals have different surface areas thereby having varying
potentials to remove. For example, schwertmannite is an iron-sulfate
Acid mine drainage (AMD) is environmental problem in many coun- hydroxide with a specific area of 200 m2/g compared to goethite with
tries due to the potential heavy metals and corrosive acidity. Pyrite is a 40 m2/g. The ability of these secondary minerals to adsorb heavy and
common mineral associated with coal and is a major contributor to toxic metals results in the natural attenuation of AMD within creeks
AMD. Coal often contains high concentrations of Fe (0.1–300 mg/L), Al [6]. However, the understanding on this field is still limited probably
(0.1–60 mg/L), Mn (0.1–100 mg/L) and SO2− 4 oxyanions due to the emphasis on active remediation on AMD [7].
(200–2000 mg/L) [1], which readily affect local creaks, rivers and oceans. Due to the supply-side reform and environmental protection, the
In AMD, based on their self-physical and chemical factors, including Chinese office of the state council promulgated a file in 2013 to
saturate index, water chemistry and transport velocity [2,3], various strengthen the closure of N2000 small-scale coal mines (annual output
metals finally form complex secondary minerals, such as labyrinthian is b6 × 105 tons of standard coal) since 2015, especially in Hunan prov-
mineral combination with different deposit types. Additionally, due to ince with abundant coal resources and complete coal types in China [8].
the geochemical variation along the river, amorphous iron hydroxides Additionally, the exposed pyrite-containing strata and excavation tun-
and aluminum-containing minerals, such as goethite (α-FeOOH), Jarosite nel in these mines are continuously exposed to oxidative wreathing.
(KFe3(SO4)2(OH)6) [4], aluminum-flocs (Al13O4(OH)24(H2O)7+ 12 ), alum These AMD-affected creeks and rivers often are in rural area; thus, the
(KAl3(SO4)2(OH)6) and gibbsite (Al(OH)3), are formed. More than forty contemporaneous and effective treatment cannot be done. Therefore,
iron, aluminum and manganese-containing secondary minerals have natural attenuation comes from the secondary minerals, primary prop-
been found in AMD [5]. erty of strata along watershed could be a main remediation mechanism.
Due to bacteria diversity physiological habits, the distinct zoning
⁎ Corresponding authors. maybe occurs in the runoff of AMD. For example, various acidophilic
E-mail addresses: Liujing-vip@163.com (J. Liu), r.frost@qut.edu.au (R.L. Frost). bacteria (YARDs1-4), acidithiobacilus ferroxidase and sulfur oxidizing

https://doi.org/10.1016/j.saa.2019.03.069
1386-1425/© 2019 Published by Elsevier B.V.
264 J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270

bacteria were identified according to the 16S rRNA sequence. Robbins closed coal mine. The creek is approximately 14 km (from 29°38′00″N
investigated microbiology in AMD with pH b 4.5 and reported that to 29°40′00″N and from 111°08′00″E to 111°11′00″E) (Fig. 1).
there were 86 genera or species in it. Gónzalez-Toril [9] collected AMD
from the LaZarza-Perrunal mine in the Iberian pyrite belt and also 3. Materials and methods
found sulfate reducers in the initial site (pH = 3.1) and ion-oxidizers oc-
curred with the downstream distance. 3.1. Collection of sediment and aqueous samples
To investigate the potential natural attenuation in AMD-affected
water systems, the AMD-affected stream water is an ideal site. The min- Sediment and water samples were collected from eight locations
eralogy of sediments in the creek was characterized and bacteria diver- along the Nanxi River where changes in pH of the water were markedly
sity also was investigated with 16S RNA [10,11]. The potential different. A sample (S0) from clean creek before AMD input into the
neutralization and re-adsorption ability of sediments from downstream river was collected for the necessary comparative sample. The sample
was also evaluated. This study provides a better understanding for the (S1) was located at the entrance of the closed mine, not the tributary
potential of rehabilitating AMD-affected creeks and rivers in Hunan. of the Nanxi River. The longitude and latitude of these sites was deter-
mined with a portable GPS receiver (Trimble). Positions of sampling
2. Studied area sites were listed in Fig. 1. The pH values of water samples were mea-
sured with calibrated Portable Hach HQ40D immediately. Samples
The AMD-affected creek (Nanxi River) in Shimen, Changde, Hunan, were transferred to the laboratory where sediments were kept at 4 °C
China was chosen. The creek flows through Baiyun Town, where the for b2 days until the geochemical analysis were performed.
state has compulsorily closed a coal mine in October 2015, and finally All water samples were filtered using a 0.45 μm membrane and an-
joins into Shishui River. The creek is in suburb without influence from alyzed for total calcium concentration (Ca(T) detection limit was
any industrial and mining enterprise and other creeks, the creek should 0.002 mg/L), total iron concentration (Fe(T) detection limit was
be a typical one to study the natural attenuation affected by AMD from 0.002 mg/L) and total magnesium concentration (Mg(T) detection

Fig. 1. Map of the Nanxi River showing eight sampling points; the sampling position in the figure was S5 (bottom right corner).
J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270 265

limit was 0.001 mg/L) using an Inductively Coupled Plasma Emission immediately were sent to Changsha of Hunan, and send to Tianjin
Spectrometer (ICP-AES, iCPA6500 Thermo Fisher) after samples passed Nuohe Zhiyuan biological analytical center with refrigerated transport
through 0.45 μm membrane. Sulfate concentrations of aqueous samples within 2 days.
were determined with Ion chromatographic method (IC, Metrohm, 881
Compact pro) [12,13]. 4. Results and discussion

3.2. Mineralogical characterization of sediments 4.1. Aqueous chemical characteristics

Mineral composition of the sediment sample was determined using The pH values and chemical analysis of filtered samples (Table 1) re-
X-ray diffraction analysis. The minerals were identified from the XRD vealed the presence of sulfate, Ca(T), Fe(T) and Mg(T)at concentrations
patterns (diffract grams) according to position, intensity, shape and much greater than of comparative point (S0), which represents a tribu-
breadth of peaks [14]. Most of the important peaks were identified tary to the Nanxi River that is not contaminated. Due to Hunan province
within the 2θ range from 8° to 43°. After sediments were dried at 80 stratum is the product of pre-Cambrian boundary event of abrupt
°C for 24 h, they were passed through 100 mesh sieves for the XRD. change in paleoenvironment [17], the geological layer contains a lot of
And in the attenuated total reflectance Fourier transform infrared spec- calcium and sulfate. The concentrations of sulfate and calcium compar-
troscopy (ATR-FTIR) analysis, ATR mode was done directly on the sieved ative also higher than others elements in natural creek (S0). As showed
powder with Perkin Elmer Spectrum (4000–400 cm−1, a spectral reso- in Table 1, all pH values were from 4.77 to 8.10, closing to that of the
lution of 4 cm−1). comparative sample S0. The Fe(T) in these samples were decreased
from 46.27 to 0.05 mg/L, Ca(T) from 26.79 to 5.46 mg/L, and Mg(T)
3.3. Cation exchange capacity (CEC) from 14.76 to 1.12 mg/L. And, synchronously, the sulfate concentrations
were decreased from 2509.36 to 74.04 mg/L. Compared with the com-
After the creek goes through clay-rich barriers, the migration of cat- parative sample S0, the AMD-contaminated Nanxi River water quality
ions and molecules might be influenced, which can be characterized by seemed to recover to its initial level after about 2 km from the source
CEC. Adsorbed cations and anions are in equilibrium with similar cat- through self-purification.
ions and anions in solution. When a particular ion is adsorbed, it is
largely replaced by some previously-adsorbed on soil particles. Accord- 4.2. Sediment of FTIR and XRD analysis
ing to the cation exchange ability of sediment, the adsorption perfor-
mance of sediment can be determined to a certain extent. Compared The representative XRD and FTIR of sediments are shown in Figs. 2
with the common Ca, Mg, Na and K in the soil [11,15], under the influ- and 3. The XRD and FTIR shows GrCO2– 3 (green rust) was found in S1
ence of AMD, the sediment cations at the bottom of Nanxi River were and Gt (goethite) was found in S2, while Sh (schwertmannite) in both
mainly Fe, Ca and Mg. Therefore, in this study, only these three cations S1 and S2. Green rust compounds can be represented with the general
were determined. The potential purification capacity of the bottom sed- formula [FeII(6−x) FeIIIx (OH)12] x+[Ax/n− ∗ yH2O] x−, where A is an n−-
iment of the river could be measured according to the changes of CEC. valent anion (mainly Cl−, CO2− 2−
3 and SO4 ) (Eq. (1)). In groundwater,
The cation exchange capacity of sediment sample was measured ac- carbonate forms of Gr precipitated preferentially over its sulfate form
cording to the NaOAc (pH 8.2) method. The sum of adsorbed positive [18], these form can exchange due to sulfate was the dominant anion
charge per kg is the cation exchange capacity (CEC, units of cmolc/kg). in the Nanxi River.

3.4. Neutralization ability of sediment Fe6 ðOHÞ12 SO4 þ CO2− 2−


3 →Fe6 ðOH Þ12 CO3 þ SO4 ð1Þ
h i
The collected sediments were air-dried, passed through 100 mesh 2−  
K 1 ¼ SO2−
4 =CO3 Fe6 ðOH Þ12 CO3 =Fe6 ðOH Þ12 SO4
sieve and stored in a plastic bag. Approximately 1.0 g of each sample
was weighed and put into glass bottle (6 glass bottles in total), and
100 mL working solution with initial pH as 3.8 were added into each Gr (SO2−
4 ) consists of alternating positively charged brucite-like iron

bottle, which were agitated (150 r/min) at 30 °C. The pH values of solu- hydroxide layers of [Fe2+ 3+
4 Fe2 (OH)12]
2+
and negatively charged inter-
2−
tions were adjusted with H2SO4 solution. The pH of solution was mea- layers of anions [SO4·8H2O] , through which the electroneutrality is
sured at reaction time of 10, 20, 30, 40, 60, 80, 110, 140, 200, 320, 440, maintained [19]. Due to the oxidation of intermediate amorphous
1040 and 1760 min. According to the pH changes of solution, the neu- metal sulfides, such as amorphous FeS (asFeS), the unstable Gr(SO2− 4 )

tralization ability of sediment was determined. tends to convert into Gt(α-FeOOH), which is the most stable iron
oxide mineral [20] (Eq. (2)). While Sh is commonly found in near-
3.5. 16S rRNA analysis on sediments from different sections surface environments and in unstable compounds. The dissolution reac-
tion of Sh was (Eq. (3)).
According to previous studies, microbial diversity was affected by
pH, ion concentration [16]. The natural attenuation trend of AMD pollu- 4Fe2þ þ HS− þ 7OH − →FeSðamÞ þ 3FeðOHÞ2 ðamÞ þ H 2 O ð2Þ
tion had an impact on the distribution of sediment biodiversity at the
bottom of the river. 16S rRNA sequence similarity is now accepted as a Table 1
method for judging the diversity of microbial communities. Therefore, The pH values and elemental compositions of water samples along the Nanxi River.
pelagic and particle-associated organisms from sediments were used Samples pH Element content
for 16S rRNA gene cloning and sequencing, including amplicon genera-
Fe(mg/L) Ca(mg/L) Mg(mg/L) SO4(mg/L)
tion, PCR products quantification and qualification, library preparation
and sequencing. The rarefaction curves, species richness estimators S0 8.50 0.03 3.84 0.56 281.84
S1 4.77 46.27 26.79 14.76 2509.36
and community diversity indices were obtained based on Qiime soft-
S2 3.83 23.09 25.20 14.78 2458.72
ware (Version 1.7.0). S3 5.66 2.26 10.94 4.62 796.61
In order to determine the bacterial diversity, five samples were S4 5.56 0.92 10.57 3.97 651.28
taken along line of creek. They were stored in centrifugal tubes and S5 7.68 0.03 7.67 1.83 224.81
kept in a 5 °C box with ice bags in order to decrease their bacteria vari- S6 7.61 0.06 6.26 1.39 111.27
S7 8.10 0.05 5.46 1.12 74.04
ation. Due to the sampling were done in summer, these samples
266 J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270

Fig. 3. ATR-FTIR spectra of sediment samples.

Fig. 2. XRD patterns of sediments from AMD-polluted Creek (GrCO2−


3 : Green Rust; Gp:
Gypsum; Sh: Schwertmannite; Gt: Goethite; Akg: Akaganeite; Kln: Kaolinite; Qz:
Quartz; Ill:illite).
The peaks from 900 to 1100 cm−1 of S5 and S6, are different from S1-
S4, could be the characteristic bending of Al-OH and stretching of Si\\O
vibrations, principally illite and kaolinite [25]. The peaks at 1163, 1088,
778, 693, and 438–475 could be the presence of quartz mineral [26–28].
Fe8 O8 ðOHÞ8−2x ðSO4 Þx þ ð24−2xÞHþ →8Fe3þ þ xSO2−
4
The XRD and ATR-FTIR comparing the sediments of each samples
þ ð16−2xÞH2 O ð3Þ showed that amorphous particles likely formed first, then aged to be-
come more iron oxyhydroxides, such as, Akg and Gt.

This might also explain Sh was not detected by XRD in S3–S6. An in-
tense band at 1124 cm−1 reflect a strong splitting of V3(SO4) due to the 4.3. Cation exchange capacity (CEC) of sediments
formation of a bidentate bridging complex between SO4 and Fe, while
the bend at 976 cm−1 was due to the presence of structural SO4 in VI As shown in Table 2, the CEC was decreased at the beginning and
(SO4) (Fig. 3) [21]. then increased within a broad range, indicating that the AMD had a sig-
Akg(akaganeite), occurs rarely in soils and is more commonly asso- nificant effect on the CEC of river sediments, probably including parent
ciated with chloride rich environments such as hot brines, has been material, age of weathering surface, climatic factors, degree of wreath-
found in marine environments, carbonate concretions and sulfide-rich ing, completeness of chemical and physical dispersion [29]. With the
sediments [22]. According some previous study [22,23], sulfate- discharge of AMD, the content of Fe and other cations in the river was
containing akaganeite was an intermediate phase between Akg and Sh gradually increased, causing the change in the form of ferriferous min-
[(Fe8O8(OH)−x 6 (SO4)x·nH2O), a structural analog of akaganeite, con- erals with a clear color change of river bottom sediment, from tan to
taining sulfate instead of chloride in tunnels]. In this creek, with the reddish brown. Thus, the change trend of CEC decreases. After the
high concentration of sulfate and the dissolution of Sh, sulfate- river self-purification and mineral natural attenuation, the CEC was
containing was formed in sample S4. Due to Gt(α-FeOOH) and Akg(β- gradually recovered to its initial natural level (approximately 45.21
FeOOH) have simile bands, the XRD results of S3-S4 had no significant cmolc/kg).
difference vibration peak. While the SO4 bands of S4 in 976 and
1174 cm−1 weaker compared with S1–S3, there are possible that chlo- Table 2
ride replace sulfate in Akg's tunnels. An intense bands at 615, 798, The cation exchange capacity (CEC cmolc/kg) of sediments.
905 cm−1 and 693, 844 cm−1 were due to the presence of Gt and Akg Samples S0 S1 S3 S4 S5 S6 S7
[24] (Fig. 3), which was consistent with XRD results, showing that Akg
CEC (cmolc/kg) 45.21 20.37 8.08 12.72 9.12 44.07 43.34
and Gt were mainly Fe-mineral forms in this acidic creek.
J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270 267

4.4. Neutralization ability has returned to its natural level. Compared to the initial sediment (S0)
and the lowest downstream sediments, the pH value of sediment from
As shown in Fig. 4, all sediments had a different respond to acidic so- AMD-affected creek was quickly decreased to pH = 3–4, indicating
lution (pH = 3.8). Sh has two dissolution reaction Eqs. (3) and (4), the formation of secondary iron-containing minerals might result in
the enhance of an acidity in the creek.
Fe8 O8 ðOHÞ8−2x ðSO4 Þx ¼ 4Fe2 O3 þ 2xH þ þ xSO2−
4 þ ð4−2xÞH 2 O ð4Þ
4.5. 16S rRNA diversity analysis
In S1 and S2, pH value was slight decreased to 3.5 and 2.4 with extra
H+ added. In S3, pH value was gradually increased due to the neutrali- According to the results of species annotation, 10 species with the
zation reaction between H+ and the stable Fe-containing minerals. In highest abundance of each sample at phylum classification level were
S4, because Gt (α-FeOOH) was more stable than Akg (β-FeOOH) [30]. selected to generate a column cumulative graph of relative abundance
Additionally, because OH– and H2O could form a complex with Fe3+ to visually characterize the relative abundance of species and their pro-
or Fe2+, the formation of a complex in an aqueous solution was actually portions at phylum levels for each sample. The result (Fig. 5) showed
a reaction in which a ligand replaced H2O in a hydrated ion to form a the bacterial composition and the similarity of the all eight Nanxi
new complex. Furthermore, H+ with high concentration in the reaction River sediment samples, indicating that Proteobacteria and Firmicutes
mixture competed with positive ions for the adsorption sites [31], and were the dominant phyla, accounting for 39.2%–57.2% and 0.5%–25.6%
the pH value of S4 solution was decreased to 3.3. relative abundance in phylum, respectively. This is consistent with pre-
Self-purification of the stream is attributed to the mineral that com- vious studies [32,33]. In addition to Proteobacteria and Firmicutes, the
pose fraction of the sediments, these minerals include Qz, Kln and Ill. other two most AMD-affected microbial phyla are Acidobacteria
The neutralization capacity of the downtown sediments (S5 and S6) (3.1–10.7%), and Bacteroidetes (4.4–20.9%). Bacteroidetes was one of

Fig. 4. The pH changes with the reaction time after an acidic solution was added.
268 J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270

Fig. 5. UniFrac UPGMA cluster of microbial communities in different sediment samples, which was constructed on the basis of Illumina sequencing data (left); relative abundance of
bacteria in sediments as term of phylum (right).

the most abundant phyla in mining area sediment, up to 17.2% [34]. In material stream [36,37] and some metal sediments. In this acidic
this study, the abundance was gradually increased from 7.4% to 20.9% creek, may due to the influence of AMD and other bacterial, with the
relative abundance in phylum with the AMD influence, and then de- pH was higher than 5.6, the Acidobacteria abundance was increased.
crease to 4.4%. The similarity among the microbial communities in the eight sedi-
Further analysis of microbial composition of Nanxi River sediments ment samples was evaluated with cluster analysis. As shown in Fig. 5,
showed a community dominated by microorganisms commonly found bacterial communities could be clustered into two groups. Group I con-
in AMD environments such as iron-, sulfur-, sulfide- and thiosulfate- tain samples S1 to S4. Groups II contain S0, S5-S7, respectively. These re-
oxidizing bacteria (Fig. 5). And the tendency of Acidobacteria abundance sults indicated that microbial community structure was probably
was gradually decreased from 7.0% to 2.6% when the pH value was de- correlated directly with the AMD, which could be also demonstrated
creased from 8.5 to 5.6. When pH was increased from 5.6 to 8.1, the in the canonical correspondence analysis (CCA) [38]. As shown in
abundance was increase from 2.6% to 10.7%. This correlation between Fig. 6, the microbial communities of S0, S6, S5 and S7 were positively
Acidobacteria and pH was consistent with a series of studies on soil correlated with pH, while those of S3, S2, S1 and S4 were positively cor-
and sediment [35]. However, a negative correlation between related with sulfate and metal ion (Fe, Mg and Ca). These results con-
Acidobacteria and pH was also observed in the presence of some firmed the effect of AMD on bacterial diversity in sediments. The

Fig. 6. The canonical correspondence analysis (CCA) between 16S rRNA gene date and environmental parameters. The arrows show the direction and size of environmental parameters
associated with bacterial community structure.
J. He et al. / Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217 (2019) 263–270 269

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