Академический Документы
Профессиональный Документы
Культура Документы
Biologic systems are essentially isothermic and use chemical energy to power living processes.
Entropy = is the extent of disorder or randomness of the system and becomes maximum as equilibrium is approached.
Enthalpy ( Heat ) = the internal energy of a system plus the product of the pressure and volume of the system.
Gibbs change in Free energy (ΔG) = portion of the total energy change in a system that is available for doing work.
Also known as the chemical potential.
Law of thermodynamics:
1st: The total energy of a system, including its surroundings, remains constant.( “Energy is neither lost nor gained.” )
( However, energy may be transferred from one part of the system to another, or may be
transformed into another form of energy. )
2nd: The total entropy of a system must increase if a process is to occur spontaneously.
( This formula shows the relationship between the free-energy change (ΔG) of a reacting system
and the change in entropy (ΔS) Under conditions of constant temperature and pressure )
The exergonic reactions are termed catabolism (generally, the breakdown or oxidation of fuel molecules), whereas the
synthetic reactions that build up substances are termed anabolism. ( Catabolism + anabolism = Metabolism )
3 Major sources of High energy phosphate taking part in energy conservation or energy capture:
1. Oxidative phosphorylation
2. Glycolysis
3. The Citric acid cycle
BIOLOGIC OXIDATION
Free energy change is proportionate to the tendency of reactants to donate or accept electrons. Thus free energy
change in terms of ΔG0′, can be expressed numerically as an oxidation-reduction or redox potential (E′0).
c. Hydroxyperoxidases - role in protecting the body against the harmful effects of reactive oxygen species (ROS).
-Uses hydrogen peroxide or organic peroxide a substrate
- 2 types of enzyme :
* Peroxidases- reduces hydrogen peroxide (Ex.in RBC glutathione peroxidase; catalyzes
the destruction of H2O2 )
* Catalase - can act as a peroxidase. also able to catalyze the breakdown of H2O2
formed by the action of oxygenases to H20 & O2
d. Oxygenases - catalyze direct transfer & incorporation of O2 into a substrate molecule.
- 2 steps in transfer & incorporation of O2:
1st : oxygen is bound to the enzyme at the active site.
2nd : the bound oxygen is reduced or transferred to the substrate
- 2 subgroups:
1. Dioxygenases -Incorporate Both Atoms of Molecular Oxygen into the Substrate
Ex. Homogentisate diooxygenase
2. Monooxygenase - ( Mixed-Function Oxidases, Hydroxylases) Incorporate Only
One Atom of Molecular Oxygen Into the Substrate.
Ex. Cytochrome P450
Cytochrome P450 - Important in Steroid Metabolism & for the Detoxification of Many Drugs.
- Mitochondrial cytochrome P450 systems are found in steroidogenic tissues and are concerned
with the biosynthesis of steroid hormones from cholesterol.
- inner membrane = selectively permeable ; enzymes = enzymes of the respiratory chain, ATP synthase, and
various membrane transporters. ( Phospholipid
cardiolipin is also found here )
Components of the Respiratory Chain are Contained in Four Large Protein Complexes Embedded in the Inner
Mitochondrial Membrane :
Electron flow
1st NADH-Q oxidoreductase (Complex I ) - electrons are transferred from NADH to coenzyme Q (ubiquinone)
2nd Q-cytochrome c oxidoreductase (Complex III) - which passes the electrons on to cytochrome c
3rd cytochrome c oxidase (Complex IV) - completes the chain, passing the electrons to O2 and causing it to be
reduced to H2O.
Some substrates with more positive redox potentials than NAD+/NADH pass electrons to Q ( 2nd ) via
a fourth complex, succinate-Q reductase (Complex II), rather than Complex I.
The Q Cycle Couples Electron Transfer to Proton Transport in Complex III
- process is believed to involve:
cytochrome c1,
cytochrome bL,
cytochrome bH
Rieske Fe-S ( (an unusual Fe-S in which one of the
Fe atoms is linked to two histidine residues rather than two cysteine residues )
Oxidative phosphorylation - flow of electrons through the respiratory chain generates ATP by this process.
- The proton motive force caused by the electrochemical potential difference (negative on the matrix side)
drives the mechanism of ATP synthesis. ( The chemiosmotic theory )
- proton motive force drives a membrane-located ATP synthase that forms ATP in the presence of Pi + ADP.
Respiratory Control Ensures a Constant Supply of ATP -Most cells in the resting state are in state 4, and respiration is
controlled by the availability of ADP.
- Energy-linked transhydrogenase, -protein in the inner mitochondrial membrane, couples the passage of
protons down the electrochemical gradient from outside to inside the mitochondrion.
- Transport of High-Energy Phosphate from Mitochondria is facilitated by the Creatine Phosphate Shuttle
- Mitochondria maintain or accumulate cations such as K+, Na+, Ca2+, and Mg2+, and Pi.
( assumed that a primary proton pump drives cation exchange. )
Classification of carbohydrates :
a. Monosaccharides - cannot be hydrolyzed into simpler carbohydrates. may be classified as trioses, tetroses,
pentoses, hexoses, or heptoses,depending upon the number of carbon atoms (3-7) and as aldoses or ketoses.
b. Disaccharide -2 monosaccharide units ( Ex. lactose, maltose, isomaltose, sucrose, and trehalose. )
c. Oligosaccharides - condensation products of three to ten monosaccharides. Most are not digested by
human enzymes.
d. Polysaccharides - condensation products of more than 10 m onosaccharide units. ( Ex. starches and
dextrins )
- In addition to starches and dextrins foods contain a wide variety of other polysaccharides that are
collectively known as nonstarch polysaccharides; they are not digested by human enzymes,
and are the major component of dietary fiber. (Ex. cellulose from plant cell walls & inulin, the
storage carbohydrate in some plants )
a. D and L isomerism - designation of a sugar isomer as the d form or its mirror image as the L form is
determined by its spatial relationship to the parent compound of the carbohydrates, the three-carbon sugar
glycerose.
b. Asymmetric carbon atoms also confers optical activity on the compound - rotates to the right
dextrorotatory (+) , to the left, levorotatory (−).
c. Pyranose and furanose ring structures - pyran (a six-membered ring) or furan (a five membered ring)
glucose in solution, more than 99% is in the pyranose form.
Polysaccharides:
- Starch - homopolymer of glucose forming an α-glucosidic chain, called a glucosan or glucan.
-the most important dietary carbohydrate in cereals, potatoes, legumes, and other vegetables.
- two main constituents are amylose & amylopectin
- Glycogen - is the storage polysaccharide in animals and is sometimes called animal starch.
- Inulin - polysaccharide of fructose (a fructosan) found in tubers and roots of dahlias, artichokes, and dandelions.
-readily soluble in water and is used to determine the glomerular filtration rate.
- Glycosaminoglycans (mucopolysaccharides) - are complex carbohydrates containing amino sugars and uronic
acids.
- Glycoproteins (also known as mucoproteins) - protein containing branched or unbranched oligosaccharide chains
including fucose
Glycemic index measure of its digestibility, based on the extent to which it raises the blood concentration of glucose.
Glycophorin is a major integral membrane glycoprotein of human erythrocytes.
The citric acid cycle (the Krebs or tricarboxylic acid cycle) - a sequence of reactions in mitochondria that oxidizes the
acetyl moiety of acetyl-CoA to CO2 & final common pathway for the oxidation of carbohydrate, lipid, and
protein because glucose, fatty acids, and most amino acids are metabolized to acetyl-CoA.
“ Acetyl CoA --> enters cycle by becoming ---> Citrate---> oxidized ---> CO2 w/ the reduction of coenzymes --->
Reoxidation of coenzymes ----> Phosphorylation of ADP to ATP”
( in 1 turn of the cycle = 9 ATP are generated via oxidative phosphorylation & 1 ATP from the conversion of succinyl
CoA to succinate w/c = 10 )
1 mol of Acetyl-CoA = 3 mol of NADH & 1 mol FADH2 is produce per cycle
citric acid cycle is not only a pathway for oxidation, but is also a major pathway for interconversion of metabolites
arising from transamination and deamination of amino acids and providing the substrates for amino acid
synthesis by transamination.
Oxaloacetate-------decarboxylation-----> phosphoenolpyruvate
( phosphoenolpyruvate carboxykinase ) = key enzyme that catalyzes net transfer out of the cycle into
gluconeogenesis.
Pyruvate ------ carboxylation -------> Oxaloacetate ( “This rxn is impt in maintaining an adequate concentration
(pyruvate carboxylase) of oxaloacetate for the condensation reaction with acetyl-CoA”)
fatty acid synthesis is a cytosolic pathway; the mitochondrial membrane is impermeable to acetyl-CoA.
For acetyl-CoA to be available in the cytosol, citrate is transported from the mitochondrion to the cytosol, then
cleavedi n a reaction catalyzed by citrate lyase.
Regulation of the Citric Acid Cycle Depends Primarily on a Supply of Oxidized Cofactors.
Hyperammonemia, - occurs in advanced liver disease and a number of (rare) genetic diseases of amino acid
metabolism, leads to loss of consciousness, coma and convulsions, and may be fatal.
- largely because of the withdrawal of α-ketoglutarate to form glutamate and then glutamine leading to
lowered concentrations of all citric acid cycle intermediates, and hence reduced generation of
ATP.
GLYCOLYSIS
Glycolysis- principal route for carbohydrate metabolism. The ability of glycolysis to provide ATP in the absence
of oxygen is especially important, because this allows skeletal muscle to perform at very high levels of work output
when oxygen supply is insufficient, and it allows tissues to survive anoxic episodes.
Under anaerobic conditions, the NADH cannot be reoxidized through the respiratory chain, and pyruvate
is reduced to lactate catalyzed by lactate dehydrogenase.
Under aerobic conditions, pyruvate is transported into mitochondria and undergoes
oxidative decarboxylation to acetyl-CoA then oxidation to CO2 in the citric acid cycle.
Pyruvate dehydrogenase complex - is analogous to the α-ketoglutarate dehydrogenase complex of the citric acid
cycle.
- Pyruvate is decarboxylated by the pyruvate dehydrogenase component of the enzyme complex to a
hydroxyethyl derivative of the thiazole ring of enzyme-bound thiamin
diphosphate.
- The reaction is completed when the reduced lipoamide is reoxidized by a flavoprotein, dihydrolipoyl
dehydrogenase, containing FAD. Finally, the reduced flavoprotein is oxidized by
NAD+, which in turn transfers reducing equivalents to the respiratory chain.
( Pyruvate + NAD+ + CoA → Acetyl-CoA + NADH + H+ + CO2 )
Metabolism of Glycogen
Glycogen = the major storage carbohydrate in animals, corresponding to starch in plants; it is a branched polymer of
α-d-glucose.
= occurs mainly in liver and muscle, with modest amounts in the brain.
= Muscle glycogen provides a readily available source of glucose-1-phosphate for glycolysis within the muscle
itself.
= Liver glycogen functions as a reserve to maintain the blood glucose concentration in the fasting state.
( Failure of gluconeogenesis is usually fatal, Hypoglycemia causes brain dysfunction, which can lead to coma and death.
Glucose is also important in maintaining adequate concentrations of intermediates of the citric acid cycle )
Pyruvate carboxylase - catalyzes the carboxylation of pyruvate to oxaloacetate, an ATP-requiring reaction in which the
vitamin biotin is the coenzyme.
Fructose 1,6-bisphosphatase - Its presence determines whether a tissue is capable of synthesizing glucose
(or glycogen) not only from pyruvate, but also from triose phosphates.
Glucagon and epinephrine - inhibit glycolysis and stimulate gluconeogenesis in the liver by increasing the
concentration of cAMP.
- This in turn activates cAMP-dependent protein kinase, leading to the phosphorylation and inactivation of
pyruvate kinase.
- responsive to a decrease in blood glucose.
Phosphofructokinase (phosphofructokinase-1) - key position in regulating glycolysis and is also subject to feedback
control.
- inhibited by citrate and by normal intracellular concentrations of ATP and is activated by 5′
AMP.
fructose 2,6-bisphosphate - most potent positive allosteric activator of phosphofructokinase- 1 and inhibitor of
fructose 1,6-bisphosphatase in liver.
Diabetes mellitus type 2 (noninsulin-dependent diabetes, NIDDM) - as a result of impaired sensitivity of tissues to
insulin action.
( PLEASE REFER TO THE SUMMARY SECTION FOR MORE INFORMATION THAT HAVE BEEN SKIPPED OR IF LACKING
THANK YOU)