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FROM THE ACADEMY

Position Paper

Position of the Academy of Nutrition and Dietetics:


Nutritional Genomics
ABSTRACT POSITION STATEMENT
It is the position of the Academy of Nutrition and Dietetics that nutritional genomics It is the position of the Academy of Nutrition
provides insight into how diet and genotype interactions affect phenotype. The practical and Dietetics that nutritional genomics pro-
vides insight into how diet and genotype
application of nutritional genomics for complex chronic disease is an emerging science interactions affect phenotype. The practical
and the use of nutrigenetic testing to provide dietary advice is not ready for routine application of nutritional genomics for com-
dietetics practice. Registered dietitian nutritionists need basic competency in genetics plex chronic disease is an emerging science
as a foundation for understanding nutritional genomics; proficiency requires advanced and the use of nutrigenetic testing to pro-
vide dietary advice is not ready for routine
knowledge and skills. Unlike single-gene defects in which a mutation in a single gene dietetics practice. Registered dietitian nutri-
results in a specific disorder, most chronic diseases, such as cardiovascular disease, tionists need basic competency in genetics
diabetes, and cancer are multigenetic and multifactorial and therefore genetic muta- as a foundation for understanding nutritional
tions are only partially predictive of disease risk. Family history, biochemical parame- genomics; proficiency requires advanced
knowledge and skills.
ters, and the presence of risk factors in individuals are relevant tools for personalizing
dietary interventions. Direct-to-consumer genetic testing is not closely regulated in the
United States and may not be accompanied by access to health care practitioners.
Applying nutritional genomics in clinical practice through the use of genetic testing
requires that registered dietitian nutritionists understand, interpret, and communicate
complex test results in which the actual risk of developing a disease may not be known.
The practical application of nutritional genomics in dietetics practice will require an
evidence-based approach to validate that personalized recommendations result in
health benefits to individuals and do not cause harm.
J Acad Nutr Diet. 2014;114:299-312.

published in 2003.2 Perhaps the most

T
HE SCIENCE OF GENETICS AND happened, both abnormal and normal.
genomics is moving at an Whereas new scientific discoveries and startling discovery was that the num-
accelerated pace. New tech- technologies continually inform the sci- ber of human genes was estimated to
nologies and scientific discov- ence of nutritional genomics, translating be significantly fewer than early esti-
eries are deepening our understanding these scientific discoveries into practical mates. Since the completion of the
of how nutrients and dietary patterns clinical application requires obtaining Human Genome Project, hundreds of
affect health maintenance and disease the same rigorous evidence that is the genomes have been sequenced from
development. Advances in epigenetics backbone of dietetics practice. the tiniest bacteria to the largest
and the influence of the microbiome mammal.3 Technological advances
on health and disease also are SEQUENCING THE HUMAN have dramatically dropped the cost of
contributing to the understanding of GENOME sequencing a human genome from $95
nutrition and health. Many omic The first draft of the human genome million in 2001 to <$6,000 in 2013.4
approaches—transcriptomics, proteomics, was published in 2001 through an in- However, these costs do not reflect
and metabolomics—will help us ternational effort called the Human the costs associated with the devel-
understand nutrientegenome in- Genome Project that took 20 years opment of bioinformatics, computa-
teractions. Genotyping alone will not be from inception to completion and cost tional tools, equipment, and the
sufficient to personalize diet for $3 billion. This incredible accomplish- analysis and interpretation of the
improved health.1 Understanding and ment was a mere 150 years after data.5 As the time and cost to sequence
manipulating how diet affects the Mendel manipulated the colors of a human genome continues to drop,
phenotype of an individual will require peas leading to his discovery of auto- the expectation that it will become an
technologies that can reveal the pro- somal recessive inheritance, 100 years integrated part of medical practice
cesses of what happens from the genetic after chromosomes were identified as becomes more of a reality. However,
blueprint through transcription and syn- bearing inherited traits, 50 years after translating whole genome sequencing
thesis of proteins to identification of me- Watson and Crick described the mo- into therapies that will benefit an in-
tabolites that will tell us what has lecular structure of genetic material dividual will require strategies to
as the double helix, and 30 years after handle large amounts of biological and
the first DNA sequencing technology medical data and the ability to identify
2212-2672/$36.00
was invented. The full sequence of significant and clinically meaningful
http://dx.doi.org/10.1016/j.jand.2013.12.001
the human genome was completed and results.6

ª 2014 by the Academy of Nutrition and Dietetics. JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS 299
FROM THE ACADEMY

GENETICS formation and, ultimately, metabolic and external/environmental factors,


Genes contain all of the biological in- function. Genes are turned on and off such as diet.
formation needed to build and main- in response to metabolic signals that Genes vary in size from a few hun-
tain a living organism (see Figure 1). the nucleus receives from internal fac- dred DNA bases to >2 million bases.
Genes are responsible for protein tors, such as hormones and enzymes, Human beings have between 20,000

Figure 1. Within the nucleus of cells throughout our body are 23 pairs of chromosomes; within each chromosome is the genetic
material organized into sequences known as genes. During the processes of transcription and translation, proteins are formed. In
transcription, the information stored in a gene’s DNA is transferred to RNA in the cell nucleus. Messenger RNA (mRNA) carries the
message from the DNA out of the nucleus into the cytoplasm. In translation, mRNA interacts with ribosomes to read the sequence
of mRNA bases. Each sequence of three bases, called a codon, usually codes for one particular amino acid. Each amino acid is
brought to the ribosome by transfer RNA (tRNA). These tRNAs are specific for the particular amino acid they carry and recognize the
codons along the mRNA.

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and 25,000 genes. Most genes are the some terms used in this article is found contains all of the biological informa-
same from person to person, but <1% in Figure 3. tion needed to build and maintain a
of genes are slightly different between living organism. Omics refers to the
people, which translates to a differ- Gene Expression entire complement of a given category
ence of 3 million bases. Natural varia- of biological molecules and informa-
The central dogma of molecular
tions in a gene, DNA sequence, or tion being studied, measured, or
biology is the flow of information from
chromosome that occur with fairly described.9
DNA to RNA. In a tightly controlled
high frequency in the general popula- Nutritional genomics is the broad
process of transcription and trans-
tion are known as polymorphisms.7 term encompassing nutrigenetics,
lation, proteins are formed. The first
The most common type of poly- nutrigenomics, and nutritional epi-
step, transcription, occurs when the
morphism involves variation at a sin- genomics, all of which involve how
information stored in a gene’s DNA is
gle base pair and are known as single nutrients and genes interact and are
transferred to RNA in the cell nucleus.
nucleotide polymorphisms (SNPs), also expressed to reveal phenotypic out-
Messenger RNA (mRNA) carries the
referred to simply as polymorphisms comes, including disease risk. Nutrige-
message from the DNA out of the nu-
(see Figure 2). netics is the influence of genetic
cleus into the cytoplasm. The second
SNPs are the most common type of variability between individuals ac-
step, translation, occurs when mRNA
genetic variation in human beings. counting for the variations in health
interacts with ribosomes, which read
Each SNP represents a difference in a status and disease risk despite similar-
the sequence of mRNA bases. Each
nucleotide. For example, an SNP may ities in dietary intake.10 Nutrigenomics
sequence of three bases, called a codon,
replace cytosine with thymine in a encompasses the interactions between
usually codes for one particular amino
specific stretch of DNA. SNPs are dietary components and the genome
acid. Proteins are formed in a process
considered a normal variation in the and the resulting changes in proteins
of gene expression (see Figure 1).8
DNA; they account for the differences and other metabolites that affect gene
in human eye color, hair color, and expression.11 Despite these de-
blood type. Some SNPs may influence Nutritional Genomics lineations, nutrigenomics is often used
the risk of developing certain diseases The genome is the entire DNA synonymously with nutritional geno-
or disorders.7 A glossary that defines sequence of an organism; the genome mics. Nutritional epigenomics refers to

Figure 2. Single nucleotide polymorphisms (SNPs) are small sequence differences within genes where the DNA sequences of
many individuals vary by a single base; not all SNPs result in structural protein changes. For example, some people may
have a chromosome with an A at a particular site where others have a chromosome with a G. SNPs occur in about 1% of the
population.

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FROM THE ACADEMY

Term Definition
Allele An allele is one of two or more versions of a gene. An individual inherits two alleles for each
gene, one from each parent. If the two alleles are the same, the individual is homozygous for
that gene. If the alleles are different, the individual is heterozygous.82
Chromosomes Structure found in the nucleus of a cell, which contains the genes. Chromosomes come in
pairs, and a normal human cell contains 46 chromosomes.82
Codon In DNA or RNA, a sequence of three nucleotides that codes for a certain amino acid or signals
the termination of translation (stop or termination codon).82
DNA Deoxyribonucleic acid. The molecules inside cells that carry genetic information and pass it
from one generation to the next.
DNA methylation The degree to which methyl groups are present or absent from certain regions of genes.35
Epigenetics Changes in the regulation of the expression of gene activity without alteration of genetic
structure.82
Gene silencing Interruption or suppression of the expression of a gene at transcriptional or translational
levels.82
Genome The entire set of genetic instructions found in a cell. In human beings, the genome consists of
23 pairs of chromosomes found in the nucleus, as well as a small chromosome found in the
cells’ mitochondria. These chromosomes, taken together, contain approximately 3.1 billion
bases of DNA sequence.82
Genome wide GWAS searches the genome for small variations or SNPs that occur more frequently in people
association with a particular disease than in people without the disease. Each study can look at hundreds
studies (GWAS) or thousands of SNPs at the same time. These studies identify genes that may contribute the
risk of developing a certain disease.82
Genotyping Testing that reveals the specific alleles inherited by an individual; particularly useful when
more than one genotypic combination can produce the same clinical presentation, as in the
ABO blood group, where both the AO and AA genotypes yield type A blood.82
Histone A protein that provides structural support to a chromosome. For very long DNA molecules to
fit into the cell nucleus, they wrap around complexes of histone proteins, giving the
chromosome a more compact shape. Some variants of histones are associated with the
regulation of gene expression.82
Human Genome Project An international research effort to determine the sequence of the human genome and
identify the genes that it contains.83
messenger RNA (mRNA) A single-stranded RNA molecule that is complementary to one of the DNA strands of a gene.
The mRNA is an RNA version of the gene that leaves the cell nucleus and moves to the
cytoplasm where proteins are made. During protein synthesis, the ribosome moves along the
mRNA, reads its base sequence, and uses the genetic code to translate each three-base triplet,
or codon, into its corresponding amino acid.82
Methylenetetrahydrofolate This enzyme converts 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate. This
reductase (MTHFR) reaction is required for the multistep process that converts homocysteine to methionine.84
Microbiome The collective genomes of the microbes (composed of bacteria, bacteriophage, fungi,
protozoa and viruses) that live inside and on the human body.85
Multigenetic The combined contribution of one or more often unspecified genes and environmental
factors, often also unknown, which cause a particular trait or disease.82

(continued on next page)


Figure 3. Glossary of terms used in the Academy of Nutrition and Dietetics position paper on nutritional genomics. The terms in this
glossary are related to genetics, genomics, and epigenetics.

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Term Definition
Nutrigenetics Impact of genetic differences between individuals on the response to dietary intake and the
ultimate influence on health status and disease risk.10
Nutrigenomics The interactions between dietary components and the genome and the resulting changes in
proteins and other metabolites that affect gene expression.11
Phenotype Observable characteristics of an organism produced by the organism’s genotype interacting
with the environment.82
Polygenic Genetic disorder resulting from the combined action of alleles of more than one gene (eg,
heart disease, diabetes, and some cancers). Although such disorders are inherited, they
depend on the simultaneous presence of several alleles; thus, the hereditary patterns usually
are more complex than those of single-gene disorders.82
Proteomics The study of protein expression and function.82
Ribonucleic A single-stranded molecule similar to DNA. An RNA strand has a backbone made of alternating
acid (RNA) sugar (ribose) and phosphate groups. Attached to each sugar is one of four bases: adenine (A),
uracil (U), cytosine (C), or guanine (G). Different types of RNA exist in the cell: mRNA, ribosomal
RNA, and transfer RNA. Some small RNAs have been found to be involved in regulating gene
expression.82
Ribosome A cellular particle made of RNA and protein that serves as the site for protein synthesis in the
cell.82
Ribosomal RNA (rRNA) The most abundant form of RNA. Together with proteins, rRNA form the ribosomes and play a
structural role and also a role in ribosomal binding of mRNA and tRNAs.82
Single nucleotide A type of polymorphism involving variation of a single base pair.82
polymorphisms (SNPs)
transferRNA (tRNA) A class of RNA that recognizes the triplet nucleotide coding sequences of mRNA and carries
the appropriate amino acid to the ribosomes, where proteins are assembled according to the
genetic code carried by mRNA.82
Figure 3. (continued) Glossary of terms used in the Academy of Nutrition and Dietetics position paper on nutritional genomics. The
terms in this glossary are related to genetics, genomics, and epigenetics.

the influence of diet on changes in disorders of nutrient metabolism in which encodes the 5,10-MTHFR enzyme
gene expression without changing the which dietary treatment that is imple- and uses folate to metabolize and
DNA sequence. Other omic areas are mented shortly after birth ameliorates thereby remove homocysteine. The
modified in response to diet. These the phenotype of severe cognitive C677T polymorphism in the MTHFR
include transcriptomics (the study of impairment and a host of medical gene reduces enzyme efficiency, so in
the transcriptome, the complete set of problems. Unlike PKU, most chronic many populations without folic acid
RNA transcripts produced by the disorders, such as cardiovascular dis- fortification, individuals with TT geno-
genome at any one time), proteomics ease (CVD), hypertension, diabetes, and type have a lower blood folate levels and
(the study of protein expression and cancer, are multigenetic and multifac- about a 20% higher homocysteine level
function), and metabolomics (the study torial.12 In these chronic diseases, a than those with the more common CC
of lowemolecular-weight molecules genetic variant, or SNP, does not genotype.14 The C677T polymorphism
found within cells and biological necessarily translate into a greater risk in the MTHFR gene has been associated
systems). of developing disease. Environmental with a moderately increased risk of
factors, such as smoking, physical ac- CVD occurrence in some genotyping
tivity, and diet modify genetic expres- studies in countries that do not fortify
Nutrigenetics sion and influence disease outcome.13 foods with folic acid, but overall the
The best-known example of nutrige- A nutritionally relevant SNP or CVD risk of individuals with the TT
netics is classic phenylketonuria (PKU) polymorphism involves folate and ho- genotype is unclear. Interestingly, folic
caused by mutations in the phenylala- mocysteine status, and potentially acid fortification, which occurred in the
nine hydroxylase gene. The primary CVD, neural tube defects, and other United States in 1998, may be lessening
treatment is a low phenylalanine disease risks. The C677T polymorphism the CVD risk in individuals with this
diet. PKU is among a small group is a common SNP of the methylenete- genotype. An inverse relationship of
of rare, autosomal recessive metabolic trahydrofolate reductase (MTHFR) gene, the TT variant and CVD mortality was

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found in a cohort in the period Generally, individuals with the E4 allele Several single gene mutations have
following folic acid fortification.15 It is have higher low-density lipoprotein been linked to severe obesity; however,
possible that the additional folic acid in (LDL) cholesterol levels and those with they represent only a small fraction of
the diet is protecting those susceptible the E2 allele have lower LDL cholesterol population-level obesity. Like most
individuals, although multiple path- levels than individuals with the common chronic disease, obesity is polygenic,
ways are involved in folate metabolism, E3/E3 genotype.18 However, the consis- involving complex geneegene and
which makes interpretation of folic tency in phenotypic outcome from gene geneeenvironment interactions.23
acid status complex. There is insuffi- variants is not always what is expected. More than 20 genes are associated
cient evidence regarding C677T poly- In the case of apoE, numerous studies with obesity-related anthropometric
morphism in the MTHFR gene to have investigated the effect of the apoE measures, including body mass index
modify current folate recommenda- genetic variant on CHD risk, including (BMI), waist circumference, and waist-
tions from those provided in the Di- three meta-analyses.18-20 Two of the an- to-hip ratio.24 Gene variants relating
etary Reference Intakes. alyses found that individuals with the E4 to the regulation of energy intake and
Folate, methionine, and choline are allele had an increased risk of CHD and expenditure include the adrenergic
intricately involved in the methylation those with the E2 allele showed no dif- receptors, uncoupling proteins, perox-
of DNA, RNA, and proteins; disturbing ference in CHD compared with the isome proliferator-activated receptor,
the metabolism of one results in common allele19,20; the third analysis proopiomelanocortin, melanocortin 4
compensatory changes in the others.16 showed less of an effect in individuals receptor, and fat mass and obesity
The importance of their interactions with the E4 allele and a stronger pro- associated (FTO) genes.23
is evident in the example of choline tective effect of the E2 allele.18 These Variation in the FTO gene has been
status in premenopausal women. Pro- analyses did not consider dietary influ- associated with obesity in genome-
viding a choline-deficient diet to hu- ence, which may have contributed to the wide association studies. Adults with
man beings results in reversible fatty inconsistent results. Other potential the FTO SNP genotype are likely to be
liver with liver and muscle damage.17 variables contributing to the in- more obese than those who do not carry
Premenopausal women are somewhat consistencies are the lack of statistical the risk allele.25 Energy intake is higher
resistant to these deleterious outcomes power, confusion by other gene variants, in children with the FTO risk allele, in-
because they have an estrogen- dietary interactions, and the lack of ac- dependent of body weight.26 Carrying
enhanced capacity for producing curate measurements of dietary fat.13 the A allele of the FTO gene increases the
choline through the phosphatidyletha- Early studies indicate that the apoE ge- risk of obesity but the risk can be
nolamine N-methyltransferase (PEMT) notype interacts with dietary saturated modified by either physical activity or
gene.17 The PEMT gene is induced by fat, increasing LDL cholesterol concen- by reducing energy intake.23 The ge-
estrogen and codes for an enzyme that trations and CHD risk, more in E4 carriers netic vulnerability to obesity may be
catalyzes the endogenous synthesis of than the other alleles.13 Insufficient evi- expressed in specific eating and activity
choline. However, premenopausal dence, study limitations, and other risk patterns that are heritable, but only
women who have an SNP in PEMT may factors for CHD preclude making dietary expressed when the environmental ex-
have an increased risk for developing fat recommendations based on apoE posures permit them to be expressed.
liver and muscle dysfunction when fed genotype testing. The established obesity-associated
a low-choline diet. In addition, pre- A similar scenario exists with the genes together explain <2% of the
menopausal women with an SNP in the cholesteryl ester transfer protein ge- interindividual BMI variation, which
methylenetetrahydrofolate dehydroge- notype. Initial research indicates an falls well below the estimated herita-
nase 1 (MTHFD1) gene, which codes for interaction between cholesteryl ester bility for obesity. The heritability of
another folate enzyme, were 15 times transfer protein SNP and alcohol con- BMI and waist circumference of 40% to
more likely to develop signs of choline sumption in determining high-density 70% indicates there may be much more
deficiency on the low-choline diet than lipoprotein cholesterol concentrations genetic variation left to uncover.24,27
those without the SNP.17 These SNPs and CVD risk. However, it has been Additional genetic factors, such as rare
may provide insight as to the interin- difficult to replicate these results.13 and low-frequency variants, copy
dividual variation in choline and folate Another CVD risk-related gene variant number variants, noncoding RNA (ie,
requirements. However, more research is the apolipoprotein A5. In this case, microRNAs that regulate gene expres-
is needed before clinical application of the SNP is associated with higher tri- sion after transcription), and epigenetic
genetic testing of the PEMT gene is glyceride concentrations and n-6 poly- modifications may be involved.24
available and adequate intake values unsaturated fatty acid dietary intake When additional functional genetic
for choline are adjusted. increases triglyceride levels.21 Although variants and further molecular and
The most widely investigated com- this finding is promising, more studies physiologic characterizations of the
mon SNPedisease association is the are required before practitioners can genes and pathways are uncovered,
relationship between the apolipoprotein provide dietary guidance based on therapeutic guidelines for obesity
E (apoE) genotype and coronary heart apolipoprotien A5 genotype. intervention based on genotype vari-
disease (CHD) risk. ApoE is a protein Genetic variations that predispose ance may become a viable approach.
involved in cholesterol and triglyceride individuals to obesity, inflammation,
metabolism and clearance. ApoE has dyslipidemia, and oxidative stress may
three isoforms (E2, E3, and E4) that interact with environmental exposures, Nutrigenomics
equate to three gene alleles; E3 is normal including diet, to alter an individual’s Energy restriction and dietary modifi-
whereas E2 and E4 are dysfunctional. risk for developing these conditions.22 cation in obese individuals are

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FROM THE ACADEMY

providing insights into how nutrients variables that could confound the consuming high-soy diets to the
affect gene expression. Studies are results. maternal diet led to similar outcomes.38
finding that when overweight and Dietary factors can act via epigenetic
obese individuals modify their diet, mechanisms throughout the lifespan,
genes related to metabolism and EPIGENOMICS and also may extend across genera-
insulin-like growth factor are decreased Epigenetics are the heritable changes tions. Individuals exposed to famine
or down-regulated.28,29 not encoded in the DNA sequence it- provide evidence that early-life envi-
Future nutrigenomic studies, which self, but that play an important role in ronmental conditions can cause epige-
examine how diet and dietary patterns the control of gene expression.33 Epi- netic changes in human beings that
affect gene expression, may help guide genetics is the process that regulates persist through generations. Six de-
clinicians in classifying obese patients how and when genes are silenced and cades after individuals were prenatally
into subtypes and identify different activated; epigenomics refers to the exposed to famine during the Dutch
phases of weight loss, such as acute or analysis of epigenetic changes in a Hunger Winter in 1944-1945, they had
long-term weight loss.30 Although cell.34 Diet can cause epigenetic less DNA methylation of the maternally
nutrigenomic and gene profiling tests changes that may turn certain genes on imprinted insulin-like growth factor 2
are not validated for clinical practice, or off, ultimately affecting cellular gene, which is a key factor in human
future testing may allow for more tar- function and metabolism.34 One growth and development, compared
geted therapy to subclasses of obese epigenetic mechanism is DNA methyl- with their unexposed, same-sex sib-
patients and aid in the development of ation, which refers to the degree to lings.39 The association occurred in the
obesity treatment strategies. which methyl groups are present or periconceptional period, reinforcing
The effects of diet intervention on absent from certain regions of genes. that very early mammalian develop-
gene expression is beginning to emerge Generally, hypomethylation allows ment is a crucial period for establishing
in other diseases, including cancer. gene expression to be activated; and maintaining epigenetic marks.39
Nutrigenomic testing was used in a hypermethylation interferes with gene The individuals exposed to famine
pilot study of low-risk prostate cancer expression. Both hypomethylation or periconceptionally have had a higher
patients who declined traditional hypermethylation describe an aberrant incidence of chronic diseases, including
treatment and participated in an scenario and the influence on a gene a doubling in the incidence of schizo-
intensive nutrition and lifestyle inter- will depend on the specific genes, the phrenia, type 2 diabetes, CHD, hyper-
vention.31 After 3 months, the men time point, and the tissues.35 cholesterolemia, and some cancers.40
were consuming about 12% energy This concept of early programming
from fat, exercising >3.6 hours per mechanisms in human adaptation to
week, and practicing stress manage- Nutritional Epigenomics the social environment can have
ment for 4.5 hours per week. CVD risk The nutrients folate, methionine, generational effects.
factors were improved, including re- choline, vitamin B-12, and vitamin B-6 The chronic low-grade inflamma-
ductions in BMI, waist circumference, are involved in one-carbon metabolism tory state that is associated with
blood pressure, and lipid levels. Gene and play a critical role in maintaining obesity, insulin resistance, CVD, and
expression analysis detected 48 up- DNA methylation. The intake of too metabolic syndrome may also be un-
regulated and 453 down-regulated much or too little of any of these nu- der epigenetic regulation.41 Human
transcripts after the intervention. In trients affects one-carbon metabolism trials are looking at DNA methylation
particular, a set of RAS family onco- and has the potential to disrupt DNA patterns before and after dietary in-
genes were down-regulated, which and histone methylation patterns.36 In terventions. In a small study of obese
may function as an androgen receptor animal studies, diets deficient in men on a weight loss regimen, hypo-
coactivator, and for which expression is methionine, choline, vitamin B-12, or caloric diets induced changes in the
increased in tumor tissues.31 A double- folate induce global hypomethylation DNA methylation pattern. There were
blind placebo-controlled randomized and site-specific hypermethylation and noted differences in methylation be-
clinical trial, the Molecular Effects of have been linked to increased cancer tween those men considered to be
Nutrition Supplements, also looked at development.36 high responders (lost >5% body
nutrient intervention and gene ex- Some of the strongest evidence that weight) compared with the low re-
pression in low-risk cancer patients diet plays a role in epigenetics, through sponders (lost 5% body weight). Af-
and found no effects of diet on gene methylation, was done in the agouti ter the weight loss intervention,
expression. Men with low-risk prostate mouse model. The wild type agouti methylation changes from baseline
cancer were stratified based on self- mice have a yellow coat color and are were apparent, leading to the premise
reported dietary consumption of fish genetically prone to obesity. The addi- that some of the markers affected
and tomatoes and then randomized to tion of folic acid, vitamin B-12, choline, could be used as early indicators of
receive supplemental lycopene, fish oil, and betaine to the maternal diet of response to the metabolic effects of a
or placebo. After 3 months, gene ex- pregnant mice altered the wild type weight-loss program.42 Future epige-
pression analysis revealed no signifi- phenotype of yellow coat and obesity to netic research will likely focus on
cant individual genes that were a phenotype characterized by a less quantifying the importance of epige-
associated with high intake of fish or yellow coat color; pseudo-agouti; and netic regulation in the etiology and
tomato.32 Limitations of this study lower prevalence of cancer, diabetes, development of obesity and the char-
include not controlling the patients’ and obesity.37 Adding genistein at acterization of the genes involved in
dietary intake and the multiple lifestyle levels comparable with human beings the processes.41

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FROM THE ACADEMY

Other epigenetic mechanisms individual’s risk of developing disease for heritable disorders in at-risk pop-
include histone modifications, gene or maintaining health. ulations, and conduct population-wide
silencing by microRNA, and chromo- newborn screening. Currently, there
some stability. DNA is tightly coiled are about 2,000 genetic tests available
around proteins known as histones;
Family History for use in clinical settings,50 most of
histone modification refers to how Family history is an important which test for rare single-gene disor-
tightly the DNA strand is wrapped screening tool to determine risk of ders. In single-gene disorders, a defec-
around the histones. Histone modifi- inherited diseases. Family history pro- tive gene may confer as high as 100%
cations are known to influence protein vides information on the genes, be- probability of the disorder, such as in
transcription, DNA repair processes, haviors, and environmental exposures Huntington’s disease. In regard to
DNA replication, and chromatin that relatives share in common. How- breast cancer genes—BRCA1 and BRCA2—
condensation. Promising evidence in ever, a state-of-the science conference there is a significant increase in proba-
human beings suggests that diet and convened by the National Institutes of bility of developing breast cancer
environmental factors directly influ- Health found that the usefulness of associated with these genes. Testing
ence these epigenetic mechanisms.33 family history in assessing the risk and for single-gene disorders occurs pri-
Genomic imprinting, which can targeting interventions for chronic marily within the traditional medical
occur through DNA methylation or disease is limited.45 A complete family testing.51
histone modification, is another mech- history can take 15 to 20 minutes to Complex disorders, such as cancer,
anism that allows for gene expression. record, and its accuracy is influenced CVD, and diabetes, are caused by ge-
In genomic imprinting, only the pater- by factors such as patient uncertainties netic and environmental factors and
nally or maternally inherited allele is regarding the details of their relatives’ genetic mutations are only partially
expressed. For example, Prader-Willi health or a poor understanding of the predictive of risk. Because of the large
syndrome that leads to severe obesity medical terms. Generally, health care number of possible geneeenvironment
arises from imprinted gene muta- practitioners are not obtaining family interactions, the interplay among
tions.35 Interestingly, loss of expression histories and, if they are, the family environment, genes, and disease is
on the paternally inherited allele history is not being done thoroughly.46 poorly understood.6 Tests for some
causes Prader-Willi syndrome, whereas The utility of the family history is still complex disorders are commercially
absence of expression of the maternal relevant. In the case of type 2 diabetes available to the public primarily
allele results in Angelman syndrome,43 mellitus, in which more than 40 loci through direct-to-consumer (DTC) ge-
a neurodevelopmental disorder char- have been associated with the disease, netic testing companies. Unlike genetic
acterized by severe mental retardation a positive family history of diabetes tests for single-gene disorders, tests for
and not associated with obesity.44 predicts risk and genetic variation.46 complex disorders, which look for
Although there is promising evi- People with a family history of colo- mutations in SNPs, are only predictive
dence that diet can influence epige- rectal cancer are at increased risk of of an altered risk associated with dis-
netic mechanisms, there are still many developing this disease.47 Family his- ease development. Because not all SNP
unanswered questions that need to tory also may help guide decisions associations and other factors that
be addressed. Such questions include regarding the use of genetic testing in contribute to the development of a
whether the nutritional influences on at-risk individuals. For example, the particular disease are known, the ab-
epigenetic modifications observed in Evaluation of Genomic Applications in solute risks from SNP association tests
animal and cell models correlate with Practice and Prevention Working are low and they are not of significant
manifestations in human beings, and Group recommends that all individuals utility to alter the standard of care at
further, what is the optimal type, dose, with a new diagnosis of colorectal this time.51
duration, and timing of the nutritional cancer be offered genetic testing for The need to define the validity and
intervention and the potential trans- hereditary nonpolyposis colorectal usefulness of genetic tests offered in
generational influence.35 cancer or Lynch syndrome, to help medical settings and directly to con-
prevent cancer in their close rela- sumers in predicting disease and to
tives.48 For CVD, traditional risk factors, determine whether identifying muta-
such as lipid levels, blood pressure, and tions improve patient outcomes promp-
APPLICATION OF NUTRITIONAL the use of family history, are beneficial ted the Centers for Disease Control
GENOMICS TO DIETETICS for assessing disease risk. However, for and Prevention (CDC) Office of Public
PRACTICE persons with CVD, there is insufficient Health Genomics to develop the ACCE
The practical application of nutritional evidence to recommend genomic model. The ACCE model defines analyt-
genomics on a personalized level re- profiling testing because the health ical validity, clinical validity, and clinical
quires knowledge of an individual’s benefit from the testing is negligible.49 utility and ethical considerations of ge-
potential susceptibility to disease. This netic tests as follows:
information may be obtained in several
different ways. Family history; bio- Genetic Testing  Analytic validity refers to how
chemical parameters; the presence of During the past decade, the availability accurately and reliably the test
risk factors for disease such as obesity, of genetic tests has increased markedly. detects whether a specific ge-
hypertension, or hyperlipidemia; and Historically, genetic tests were used netic variant is present or absent.
results from genetic testing may pro- within a traditional medical setting to For example, a test that might
vide useful information about an confirm a suspected diagnosis, screen be used in the diagnosis of

306 JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS February 2014 Volume 114 Number 2
FROM THE ACADEMY

familial hypercholesterolemia  pharmacogenomic testing to consumers; DTC genetic testing has


(FH) would accurately and inform safety and effectiveness become increasingly available online
consistently determine the of medications; and during the past 10 years due to
presence of mutations in the  single-gene disorders and chro- declining costs, improved testing tech-
LDLR, APOB, or PCSK9 genes.52 mosomal abnormalities for diag- nologies,57 and lack of regulation.58
 Clinical validity refers to nosis, management, and carrier Typically, a customer sends a DNA
whether the test accurately de- testing for these disorders. sample, such as a cheek swab, through
tects or predicts the presence of the mail and results are returned by
The CDC determined the following
a disorder or disease. Using the mail, over the telephone, or posted
genomic applications are not ready for
FH example, if specific mutations online.59 A health care provider is
routine practice because they lack an-
are present in the LDLR, APOB, or typically not involved in either ordering
alytic validity, clinical validity, and
PCSK9 genes, the test would the test or interpreting the results,60
clinical utility:
confirm a diagnosis of FH. although some DTC genetic testing
 Clinical utility refers to how  genetic risk factors for common companies do provide access to a health
likely it is that the test will diseases; care practitioner.
improve patient outcomes. In  >400 emerging genomic tests Currently available DTC genetic tests
the FH example, the test results for various intended uses; and include >100 disease susceptibility
allow for meaningful clinical  next-generation sequencing/ markers, a number of traits (eg, eye
decision making for the whole genome sequencing to color), carrier and diagnostic testing,
individual. assess risk for common diseases. drug response, and ancestry and
 Ethical, legal, and social impli- kinship testing.51 Despite claims by
Genetic tests are added or re-
cations that may be associated DTC testing companies that the infor-
categorized as their status changes,
with use of the test. mation provided allows consumers to
depending on the outcome of several
make more informed health care de-
The CDC categorized genetic tests evidence-based evaluation mecha-
cisions, the health value of this testing
and their application in practice by nisms, including from the Evaluation of
remains questionable.57 Moreover, the
level of evidence.53 This categorization Genomic Applications in Practice and
results that are returned to consumers
assists clinicians in the application of Prevention Working Group and the US
is an interpretation of risk, and the
genomic tests.49 Currently, the CDC Preventive Services Taskforce54; the
accuracy of the interpretation is
Office of Public Health Genomics pro- CDC website is periodically updated.
dependent on many factors, including
vides evidence-based recommenda-
the particular panel of risk SNPs used
tions for the following genomic tests Regulation and Oversight of by the company and the other envi-
that can be recommended for clinical Genetic Tests ronmental factors that contribute to
use, having achieved analytic validity, Multiple federal and state govern- the risk of developing disease.61
clinical validity, and clinical utility: mental entities share responsibility DTC nutrigenetic testing companies
 newborn screening panel of 31 for the oversight of genetic tests. A that offer tailored diets and advice
core conditions for all newborns; comprehensive review is available in US regarding the use of dietary supple-
 BRCA1/2 analysis for women System of Oversight of Genetic Testing: A ments based on SNP analysis prolifer-
with specific history of breast or Response to the Charge of the Secretary of ated during the early 2000s. The
ovarian cancer; Health and Human Services.55 concern about the lack of regulation of
 Lynch syndrome screening; There are two categories of genetic DTC nutrigenetic tests was brought to
 FH among relatives of persons tests used in clinical practice. In vitro wide attention during 2006 with the
with FH; diagnostic tests are manufactured to be publication of a US Government
 human leukocyte antigen testing distributed to multiple laboratories. Accountability Office report62 that
for abacavir sensitivity for pa- Laboratory-developed tests are solely found selected tests misled consumers
tients with human immunodefi- used in the test developer’s laboratory. and provided nutrition advice based
ciency virus; and New technologies and testing plat- primarily on medical and family his-
 human epidermal growth factor forms, such as gene panels and whole- tory. The Federal Trade Commission
receptor 2 mutation testing in genome tests that analyze many notified several companies that their
breast cancer in patients with variants and DTC genomic testing, are advertising claims mislead consumers
invasive breast cancer. challenging conventional regulatory because their tests had not demon-
paradigms. DTC genetic tests are strated clinical validity or utility. Most
According to the CDC, the genomic considered laboratory-developed tests of these companies went out of busi-
applications that have demonstrated but their classification is unclear ness or changed their business
analytic and clinical validity but have because they often use a gene chip, a model.63 Other DTC companies market
insufficient evidence for clinical utility tool that identifies variations in genes, their tests as lifestyle behavior ap-
include: bought from a third party.56 proaches rather than disease diag-
 breast cancer gene expression nosis59 and have been able to avoid the
profiles to estimate risk of DTC Genetic Testing and regulatory red flags of selling medical
recurrence and target therapy; Nutrigenetic Testing devices. Regulatory agencies, such as
 family history for common DTC genetic testing refers to genetic the Federal Trade Commission and
diseases; tests that are marketed directly to the Food and Drug Administration,

February 2014 Volume 114 Number 2 JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS 307
FROM THE ACADEMY

Agency Genetic testing activities Comments Website


Food and Drug  Regulates genetic tests as  FDA has exercised its reg- www.fda.gov/MedicalDevices/
Administration medical devices if they ulatory authority over IVDs default.htm
(FDA) provide medical informa- and approved several www.fda.gov/NewsEvents/
tion used to diagnose, tests for specific genetic Testimony/ucm219925.htm
treat, or prevent disease61 factors
 Regulates IVDa genetic  LDTs have been increas-
tests that are made by ingly used to assess high-
one company then sold as risk common conditions
a kit to a laboratory often with minimal or no
 Regulates genetic tests findings to support their
based on risk/degree of clinical usefulness
harm of inaccurate test
results, not dependent on
type of test or who makes
the test
 FDA has authority over
LDTsb, but has limited its
regulation because
historically LDTs were low-
risk diagnostic tools
interpreted by experts in
test developer’s laboratory
Centers for  Regulates clinical labora-  Does not address the www.cms.gov/Regulations-and-
Medicare & tory testing in the United clinical validity or utility of Guidance/Legislation/CLIA/
Medicaid States through CLIAc tests64 index.html?redirect¼/clia/
Services  Ensures analytical validity
(CMS) of genetic tests
Federal Trade  Administers consumer  Relevant for DTCd genetic www.consumer.ftc.gov/articles/
Commission protection laws, especially testing because 0166-home-genetic-tests
(FTC) related to unfair or companies market
deceptive trade practices, products directly to
such as misleading adver- consumers rather than to
tising claims physicians or health care
companies
 FTC can enforce action to
prohibit DTC companies’
claims of clinical validity if
there is inadequate scien-
tific evidence for such
claims
National  Central location for  Does not independently www.ncbi.nlm.nih.gov/gtr/docs/
Institutes voluntary submission of verify information code/
of Health (NIH) genetic test information submitted
Genetic Testing by CLIA-certified  Does not endorse tests or
Registry (GTR) laboratories laboratories listed

(continued on next page)


Figure 4. Regulation and oversight of genetic tests and personal genetic information.

308 JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS February 2014 Volume 114 Number 2
FROM THE ACADEMY

Agency Genetic testing activities Comments Website


 Information included is  Submitters must abide by
the test’s purpose, meth- Code of Conduct that for-
odology, validity, evidence bids them to make claims
of test usefulness, and that NIH approves or en-
laboratory contacts and dorses tests or informa-
credentials tion submitted
Consumer
Protection Description Comments Website
Genetic  Prohibits discrimination  Genetic information is www.genome.gov/24519851
Information by health insurance com- defined as information
Nondis panies and employers on about an individual’s ge-
crimination the basis of genetic netic tests, genetic tests of
Act of 2008 information family members, and
(GINA) manifestation of a disease
or disorder in family
members
 Does not cover life,
disability, and long-term
care insurance
a
IVD¼in vitro diagnostic.
b
LDT¼laboratory-developed tests.
c
CLIA¼Clinical Laboratory Improvement Amendment.
d
DTC¼direct to consumers.
Figure 4. (continued) Regulation and oversight of genetic tests and personal genetic information.

monitor the industry (see Figure 4).61,64 other health-related information and unrelated or incidental findings,69
A recent Food and Drug Administration genetic exceptionalism. Genetic ex- informing clients about results that
panel recommended that some DTC ceptionalism refers to information that are not in their purview may have
genetic tests sold online no longer be identifies family relationships, can pre- serious ramifications depending on the
readily available to consumers and that dict future health events, may be of specific findings. Disclosure of the
pre-symptomatic, high predictor tests interest to third parties such as insurers presence of a gene variant from SNP
that are available for at-home use and employers, and can be recovered analysis to a relative may pose undue
without a prescription should not be from stored biological specimens in the burden and should also be handled by
used without the involvement of a future.68 There are protections in place geneticists or genetic counselors. In the
physician or genetic specialist.65 arising from the Genetic Information case of genetic variants, it is difficult to
Nondiscrimination Act of 2008, which predict disease risk in an individual; to
prohibits discrimination by health in- extrapolate results to family members
Ethical, Legal, and Social Issues surance companies and employers on would be questionable. As an integral
Ethical issues associated with nutri- the basis of genetic information (see part of a team approach to patient care,
tional genomics relate to research, ge- Figure 4). Ethical questions arise an RDN may collaborate with a primary
netic testing, and clinical practice. The regarding the obligation of informing care physician and/or genetics profes-
same regulations that apply to using nutrigenomic study participants of re- sional in the interpretation of genetic
human subjects in research66 apply to sults of genotypic tests in which the testing results and development of a
nutritional genomic research. Nutri- consequences of particular genotypes care plan. However, disclosure of ge-
tional genomics research ethics chal- may be unknown.67 netic test results should be the re-
lenges traditional human research Whether or not registered dietitian sponsibility of primary care physicians
ethics because genetic information is nutritionists (RDNs) inform clients in conjunction with geneticists or ge-
often generated through large-scale about genetic test results is an ethical netics counselors. As genetic testing
population studies.67 The generation issue and the course of action is not expands to genome sequencing and the
of genetic information raises issues of well defined. Although it has been potential to detect the presence of ge-
whether or not genetic data per se suggested that RDNs inform clients of netic mutations of unknown signifi-
should be treated differently from genetic test results that might include cance, recessive disease carrier status,

February 2014 Volume 114 Number 2 JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS 309
FROM THE ACADEMY

and genes that predict adult-onset blood glucose and glycosylated hemo- eat with concern for specific health
conditions in children, interpretation globin levels, the man was diagnosed effects, and many fall somewhere be-
and decisions regarding disclosure of with type 2 diabetes triggered by a tween those. Current public health
results to clients and patients should viral infection. The implementation of messages provide important nutrition
be handled by genetics professionals. dietary changes and increased exercise guidance for the general population.
normalized this man’s biochemical Nutritional genomics may help RDNs
RDNs’ Knowledge of Genetics parameters without the use of medi- bridge the gap from overarching public
and Nutritional Genomics cations. Although this was a single health messages to more individualized
subject, the case highlights several dietary guidance. Although the disci-
The application of nutritional genomics
important aspects of the application of pline of nutritional genomics holds
in clinical practice requires that health
nutritional genomics to dietary prac- promise for tailoring diet to a person’s
care professionals understand, inter-
tice. The use of multiple technologies genotype and influencing chronic dis-
pret, and communicate complex test
combined in ways that identify medical ease development, the science is still
results in which the actual risk of
risk and monitor physiologic states developing. The knowledge gained
developing a disease may or may not
is a model that will link associated from nutritional genomics requires an
be known.70 Yet most health care pro-
disease risk alleles with the develop- evidence-based approach to validate
viders are not trained in clinical ge-
ment of actual disease or maintenance that personalized recommendations
netics and molecular testing and have
of health. This model provides an op- result in health benefits to individuals34
limited ability to discuss probability
portunity to positively change out- and do not cause harm.79 Whether or
and risk.70
comes and influence standards of care. not the knowledge gained from nutri-
For more than a decade, surveys of
In addition, RDNs as integral members tional genomics can be integrated into
RDNs in the United States, Canada, and
of health care teams will have the the everyday lives of consumers is yet
the United Kingdom have found low
advantage of intervening early in unknown.81
knowledge of nutritional genomics
chronic disease progression with the
and poor confidence in incorporating
aim of prevention.
this science into practice.71-74 Genetics
The 2012-2022 Dietetics Workforce References
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59. Saukko PM, Reed M, Britten N, Hogarth S. 68. Zimmern RL, Khoury MJ. The impact of Practice and Standards of Professional
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This Academy of Nutrition and Dietetics position was adopted by the House of Delegates Leadership Team on September 17, 2013. This position
is in effect until December 31, 2016. Requests to use portions of the position must be directed to the Academy at journal@eatright.org.
Authors: Kathryn M. Camp, MS, RD, CSP, Kelly Government Solutions, Rockville, MD (Consultant to the Office of Dietary Supplements, National
Institutes of Health, Bethesda, MD); Elaine Trujillo, MS, RD, Division of Cancer Prevention, National Cancer Institute, National Institutes of Health,
Bethesda, MD.
Reviewers: Sharon Denny, MS, RD (Academy Knowledge Center, Chicago, IL); Oncology dietetic practice group (DPG) (Suzanne Dixon, MPH, MS,
RD, The Health Geek, LLC, Portland, OR); Dietitians in Integrative and Functional Medicine DPG (Colleen Fogarty Draper, MS, LDN, Nestlé Institute
of Health Sciences, EPFL Campus, Lausanne Switzerland); Johanna T. Dwyer, DSc, RD (Tufts University, Boston, MA); Lynnette R. Ferguson, DPhil
(Oxon), DSc, FNZIFST (The University of Auckland, Auckland, New Zealand); Donna A. Israel, PhD, RD, LPC, FADA (Baylor University, Waco, TX);
Quality Management Committee (Barbara Kamp, MS, RD, Johnson & Wales University, Miami, FL); Mary Pat Raimondi, MS, RD (Academy Policy
Initiatives & Advocacy, Washington, DC); Research DPG (Colleen Spees, PhD, MEd, RD, LD, Ohio State University, Columbus, OH); Alison Steiber,
PhD, RD (Academy Research & Strategic Business Development, Chicago, IL).
Academy Positions Committee Workgroup: Linda B. Godfrey, MS, RD, SNS, LD (chair); Christine A. Rosenbloom, PhD, RD, LD, CSSD; and Tanya Agurs-
Collins, PhD, RD (content advisor).
The findings and conclusions of this report do not necessarily represent the views of the National Institutes of Health or the US Department of
Health and Human Services.

312 JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS February 2014 Volume 114 Number 2

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