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GVI Ecuador
Produced by
Chris Beirne – Field Manager
Oliver Burdekin – Field Staff
Simon Mitchell –Field Staff
Jennifer Sinasac – Field Staff
Kristina Spicer – Short-term Intern
and
Edited by
Karina Berg – Country Director
Added 18 new species to the reserve list, all birds; Tiny Hawk (Accipiter superciliosus),
Pale-tailed Barbthroat (Threnetes leucurus), White-necked Jacobin (Florisuga mellivora),
Tawny-throated Leaftosser (Sclerurus mexicanus), Black-banded Woodcreeper
(Dendrocolaptes picumnus), Chestnut-winged Foliage-gleaner (Philydor erythropterum),
Plain Xenops (Xenops minutus), Bicoloured Antbird (Gymnopithys leucaspis), Pygmy
Antwren (Myrmotherula brachyura), Crowned Slaty Flycatcher (Griseotyrannus
aurantioatrocristatus), White-winged Becard (Pachyramphus polychopterus), Golden-
crowned Spadebill (Platyrinchus coronatus), White-thighed Swallow (Neochelidon
tibialis), Black-faced Dacnis (Dacnis lineata), White-vented Euphonia (Euphonia minuta),
Fulvous Shrike-tanager (Lanio fulvus), Masked Tanager (Tangara nigrocincta), Canada
Warbler (Wilsonia canadensis).
Continued to collect data on the effect of structural habitat change on the amphibian and
reptile communities, using pitfall trapping and visual encounter surveys.
Continued with a project investigating the effects of disturbance from the road upon
butterfly communities.
Continued to sample dung beetles within different habitats around the reserve.
Continued with English lessons for local school children in Puerto Rico twice a week.
Welcomed four pasantes (work experience students) from the Yachana Technical High
School to join the expedition, in order to exchange language skills, knowledge and
experience.
Visited Yasuní National Park and Sumak Allpa, an island reserve and school run by a
local conservationist.
3
Continued helping the local organisation Amanecer Campisino with their projects in the
local region.
Participated in two mingas (community projects); one at Puerto Salazar and one at
Puerto Rico.
Conducted a stream quality assessment comparing stream health on the reserve and
stream health in the nearest community, Puerto Salazar.
4
Contents
List of Figures ....................................................................................................................6
1 Introduction ...................................................................................................................7
2 Avian Research ..........................................................................................................10
2.1 Avian Mistnetting....................................................................................10
2.2 Point Counts ..........................................................................................14
3 Mammal Incidentals ....................................................................................................20
4 Herpetological Research.............................................................................................20
4.1 The Effect of Structural Habitat Change on Herpetofaunal Communities20
5 Butterfly Research ......................................................................................................26
5.1 Assessment of Antropogenic Disturbance on Butterfly Communities .....26
6 Benthic Surveying .......................................................................................................31
7 Community Development Projects ..............................................................................35
7.1 Colegio Técnico Yachana (Yachana Technical High School) .................35
7.2 TEFL at Puerto Rico...............................................................................36
7.3 English Classes at Puerto Salazar .........................................................36
8 Future Expedition Aims ...............................................................................................37
9 References .................................................................................................................38
9.1 General References ...............................................................................38
9.2 Field Use References.............................................................................39
9.3 Avifuanal References .............................................................................40
9.4 Amphibian References ...........................................................................43
9.5 Butterfly References...............................................................................46
9.6 Benthic References ................................................................................46
10 Appendices .................................................................................................................48
10.1 GVI Species List ....................................................................................48
Class Aves ..............................................................................................................48
Class Mammalia ......................................................................................................53
Class Sauropsida ....................................................................................................54
Class Amphibia .......................................................................................................55
Class Arachnida ......................................................................................................56
Class Insecta...........................................................................................................56
10.2 Yachana Reserve Map .............................................................................................61
10.3 Complete Benthic Surveying Results .......................................................................62
5
List of Figures
Figure 2.1.1 - Map showing the location of each mist netting site
Figure 2.2.2 - Perecentage congruence with staff member versus hours of training.
Figure 4.1.2 - Number of individuals found on visual encounter surveys in Phase 102
Figure 4.1.3 - Number of individuals found in pitfall traps in total in the project so far
Figure 4.1.4 - Number of individuals found in total for visual encounter surveys in the project
so far
Figure 5.1.1 - The new standardised dot codes introduced in week six of Phase 101 and
used consistently through Phase 102
Figure 5.1.2 - Individual butterfly numbers as distributed in trap sites along the road, on the
trail and in the forest for Frontier and Columbia Trails
Figure 5.1.3 - Species diversity indicated by number of species collected at each of the
disturbance levels – road, trail and forest for Frontier and Columbia Trails during Phase 102
6
1 Introduction
The Rainforest Conservation and Community Development Expedition operated by Global
Vision International (GVI) is located in the Yachana Reserve in the Napo province (0° 50'
45.47"S/ -77° 13' 43.65"W; 300-350m altitude), Amazonian region of Ecuador. The reserve
is legally-designated a Bosque Protector (Protected Forest) consisting of approximately
1000 hectares of predominantly primary lowland rainforest, as well as abandoned
plantations, grassland, riparian forest, regenerating forest and a road. The Yachana
Reserve is owned and managed by the Yachana Foundation. It is surrounded by large
areas of pasture land, small active cacao farms and currently un-mapped disturbed primary
forest. The road within the Yachana Reserve is a large stone and gravel based road which
dissects the primary forest to the north and the abandoned cacao plantations and grassland
areas to the south.
GVI Amazon
Rio Napo, Napo Province
7
The Yachana Foundation is dedicated to finding sustainable solutions to the problems facing
the Ecuadorian Amazon region. The foundation works with rainforest communities to
improve education, develop community-based medical care, establish sustainable
agricultural practices, provide environmentally sustainable economic alternatives, and
conserve the rainforest. The Yachana Reserve is the result of the foundation’s efforts to
purchase blocks of land for the purpose of conservation. The Yachana Foundation has a
long-term plan of sustainable management for the reserve according to International Union
for the Conservation of Nature (IUCN) protected forest guidelines and guidelines laid out by
the Ministerio del Ambiente (Ecuadorian Ministry of the Environment). One of GVI’s main
roles at the reserve is to provide support where deemed necessary for the development of
the management plan. This includes reserve boundary determination, baseline biodiversity
assessments, visitor information support, and research centre development.
GVI also works closely with the Yachana Technical High School, a unique educational
facility for students from the surrounding region. The high school provides students with
meaningful education and practical experience in sustainable agriculture, animal husbandry,
conservation, eco-tourism, and small business operations. As part of their experiential
learning program, students use the Yachana Reserve and GVI’s presence as a valuable
educational tool. As part of their conservation curriculum, the students visit the reserve to
receive hands on training in some of GVI’s research methodology, as well as familiarization
with ecological systems. On a rotational basis, students spend time at the reserve where
they participate in the current research activities, and receive conversational English classes
from GVI volunteers.
GVI additionally conducts TEFL classes (Teaching English as a Foreign Language) at the
nearby village of Puerto Rico, twice a week. Classes are prepared the day before and last
for one hour. Groups of two or three volunteers conduct the classes, covering relevant topics
to the local school children. This allows GVI to integrate with the local community, whilst
giving volunteers the opportunity to experience firsthand involvement in community
development through teaching English. This is also currently laying the foundation to
introduce environmental education programmes to the Puerto Rico community in the future.
GVI also works with local research institutions. The Museo Ecuatoriano de Ciencias
Naturales, MECN, (Ecuadorian Museum for Natural Sciences) provides technical assistance
with field research and project development. The museum is a government research
institution which houses information and conducts research on the presence and distribution
of floral and faunal species throughout Ecuador. GVI obtains their investigation permit with
8
the support of MECN for the collection of specimens. The data and specimens collected by
GVI are being lodged with the MECN in order to make this information nationally and
internationally available, and to provide verification of the field data. MECN technicians are
continuously invited to the Yachana Reserve to conduct in-field training and education for
GVI and Yachana students, as well as explore research opportunities otherwise unavailable.
A major goal for GVI’s research is to shift focus from identifying species in the reserve to
collecting data for management concerns and publication. In collaboration with all local and
international partners, GVI focuses its research on answering ecological questions related to
conservation. With this in mind, several key goals have been identified:
In order to achieve the key goals, volunteers participate in five or ten weeks of each phase
and are trained by GVI personnel to conduct research on behalf of the local partners in
support of their ongoing work. This report summarises the scientific research and
community-based programmes conducted during the ten-week expedition from Friday 2nd
April to Friday 11th June 2010, at the Yachana Reserve.
9
2 Avian Research
Several studies have optimistically concluded that this expansion of secondary forest will
offset the loss of worldwide biodiversity through destruction of primary habitat (Wright 2005;
Wright and Muller–Landau 2006). Stating that, the observed time lags between habitat
destruction and species extinctions are of sufficient length to allow secondary forest to
mature and regenerate into suitable habitat (Brooks et al; 2002). Dunn (2004) states that;
regenerating tropical secondary forests recover sufficiently in 20-40 years to recover faunal
species diversity, but support lesser tree diversities than old growth forests. Species
compositions of flora and fauna communities often differ between secondary and primary
habitats (Blake and Loiselle 2000). The value of regenerating secondary forest will be
context and species dependant. There is a growing consensus that there is currently a lack
of empirical evidence to support the theories that regenerating disturbed habitats will be
sufficient to conserve most forest species in the future (Gardner et al. 2007). Undoubtedly,
further research needs to be performed before the true value of secondary regenerating
forest can be unequivocally determined.
There is currently a lack of consensus between many studies examining the impacts of
habitat change on bird communities. Despite birds being the most studied and understood
taxa in the Neotropics, a recent review of literature found that, pre-2008; only 17 studies
examined the value of secondary forest for tropical birds (Barlow et al. 2006). The majority of
studies conducted to date have concluded that secondary forests can support equivalent or
10
high levels of species richness compared to primary or relatively undisturbed forest (Barlow
et al, 2006). Despite these encouraging results, there are a whole host of problems with the
existing studies which make a strong conclusion of the value of secondary forest for
Neotropical birds impossible to determine (Gardner et al. 2006). For example, several of the
studies attribute the high species richness to the close proximity of primary habitat, resulting
in primary species being transiently recorded in secondary habitat. Several studies also
lacked a good primary forest baseline with which to compare their results (Barlow et al.
2006). This aims to address the problems highlighted by Gardner et al (2007), to compare
understory bird communities in the disturbed secondary patches of the Yachana Reserve
with the relatively undisturbed patches.
Methods
Study Plots
Four net locations were established around the reserve; two in relatively disturbed areas,
two in relatively undisturbed areas (see Fig. 2.1.1). The net locations were no closer than
500m apart at their nearest point as Barlow and Peres (2004) concluded, based on
recaptures of marked individuals, that plots 500m apart were spatially independent. The net
locations are restricted to trails within the reserve, as the hilly topography makes establishing
nets in other locations impossible without destroying large areas of native vegetation. Plots
are random with respect to tree fall gaps, fruiting trees or other factors which may influence
capture rates.
Mistnetting
Understory mistnetting was used to examine the avifauna at each of the four sites within the
reserve. Each site was sampled for 69 to 70 hours between the 12th April 2010 and the 3rd
June 2010. Four 12 x 2.5m mist nets with 10-40m spacing (to allow for difficult topography)
were established at each site. All nets could be checked within a 10-15 minute periods.
Captured birds were then released away from the net locations from an established banding
station. Nets were opened between 6.30am and 11.10am for four successive days, allowing
extra hours or days to account for periods of persistent wind or heavy rain. Nets were
checked every 30 minutes. All captures were placed in a bird bag and returned to the
banding station where they were be identified to species, banded, weighed, measured and
sexed whenever possible. All birds were banded to identify recaptures, except
hummingbirds, which have extremely delicate legs.
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Figure 2.1.1 Map showing the location of each mist netting site in Yachana Reserve
The pink dots represent the ‘less disturbed’ sites of Laguna and Frontier, whilst the green
dots represent the ‘more disturbed’ sites of Cascada and Ficus. The blue circles represent
required site separation outlined by Barlow and Perez (2004) to ensure the sites are
independent.
Vegetation Mapping
Around each mist-netting site six 100m transects were assessed. Each transect started
250m away from the mist-netting center point and ended 150m away from the center point
and were spaced evenly to avoid psuedoreplication. The transects were stratified and
placed randomly with regard to topography and habitat. Along each transect, five canopy
coverage estimations were made by two independent observers and the dominant type of
canopy was noted (Absent, Low, Middle and High). All Melostomatacae and Heliconidae
within five metres either side of the transect line were counted. All trees >30cm Diameter at
Breast Height (DBH) were measured within five metres either side of the transect line. The
presence or absence of trees of the genus Theobroma and coffee plants were also noted.
Results
Vegetation Profiling
On the basis of vegetation mapping results from Phases 094 (October-December 2009) and
101 (January-March 2010) Cascada and Ficus are classified as ‘more disturbed’ and Laguna
and Frontier are classified as ‘less disturbed’.
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Avifaunal Sampling
In Phase 102 (Fig. 2.1.2), 89 birds were captured in 279 hours of mist-netting between the
dates of 12th April 2010 and 3rd June 2010. Individuals caught at each site varied from
eleven individuals to 30. Each site was subjected to between 69 hours and 70 net hours of
sampling. The total number of individuals captured in the ‘more disturbed’ areas was 32,
whereas the total number of individuals captured in the ‘less disturbed’ areas was 57. The
number of species captured at the ‘less disturbed’ sites was also lower than the number
captured in the ‘more disturbed’ sites (see Fig.2.1.2). The understory birds caught at each of
the ‘more disturbed’ areas represented only ten different bird families, where as birds caught
at the ‘less disturbed’ areas each represented by eight and six different bird families.
Capture efficiencies, represented by number of individuals per mist net hour, where also
higher in the ‘less disturbed’ sites (0.24 and 0.22 indiv.h-1) in comparison to the ‘more
disturbed’ sites (0.19 and 0.12 indiv.h-1).
Figure 2.1.3 shows summary data for all of the mist netting sessions to date. All locations
have been subjected to between 200 and 207 hours of sampling. Frontier appears to be the
most diverse site, with 34 species recorded, followed by Laguna with 31. Cascada has
produced 24 species where as Ficus has recorded only 15. Frontier and Laguna have
recorded many more individuals than Cascada and Ficus too. In terms of families the ‘less
disturbed’ sites of Frontier and Laguna support 14, whereas the ‘more disturbed’ Cascada
and Ficus have recorded eleven and nine respectively.
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Discussion
Understory Mist-netting
Several differences between the ‘less disturbed’ and ‘more disturbed’ sites have been
observed. These include; the number of species caught, the number of individuals caught,
the number of families represented and the percentage of individuals from a given family
caught at each site. However, the current sample size of 296 birds is prohibitive of any
statistically relevant analysis. The differences observed could be due to, but not limited to,
genuine differences in understory bird community richness and structure in each area,
seasonal variations in bird foraging patterns, different weather conditions, or simply a
function of the low number of birds in the data set. The only way to begin to address these
potential factors is to increase the size of data set through repeated sampling at each study
site until enough data is obtained. Until that point, any conclusions will simply be
speculation.
Looking at the summary data from the project as a whole, it would appear that the quality of
sites is currently as follows: Frontier>Laguna>Cascada>Ficus. When related to the current
vegetation mapping classifications of each site, the data suggests that ‘less disturbed’ sites
are able to support more individual, more species and more bird families than ‘more
disturbed’ sites. Again, this is currently just a suggestion. More data is needed before firm
statistically significant conclusions can be made.
Future Work
Both the understory mist-netting and vegetation mapping will be continued in their current
forms as they appear to be functioning effectively.
A complicating factor in assessing the scale of the problem is that there is a current lack of
consensus on the extent to which large areas of regenerating and planted forests will be
able to offset biodiversity loss from destruction of primary forest areas (Barlow et al, 2007;
14
Daily, 2001; Lindenmayer and Hobbs, 2004; Wright and Muller-Landau, 2006; Brook et al.,
2006; Gardner et al., in press). Some authors have argued that degraded and abandoned
lands in deforested landscapes are of high importance for the future conservation of tropical
forest wildlife (Daily, 2001; Lindenmayer and Franklin, 2002; Wright and Muller-Landau,
2006), whilst others have speculated that this may be over-optimistic given the current lack
of knowledge the biodiversity value of secondary forests, (Brook et al., 2006; Gardner et al.
in press).
Avian biodiversity in particular has been strongly affected by anthropogenic change in land-
use (E.g Sodhi et al, 2004), with the world carrying capacity of overall numbers of individuals
also thought to have been greatly reduced due to agriculture-driven changes (Gaston et al
2002). As many as 85% of the threatened bird species are at risk as a result of habitat loss
and degradation (Birdlife International, 2000), with the majority of these in tropical
ecosystems. Therefore, assessing the avian communities of the Yachana Reserve along a
disturbance gradient should provide an insight into the relative avian biodiversity values of
forest suffering varying levels of disturbance. Since land-use change is also known to affect
many other taxa, findings could also be particularly pertinent if coupled with those from
similar projects which have been undertaken on other taxa (reptiles, amphibian and dung
beetle assemblages across disturbance gradients are also being investigated on the
Yachana Reserve). As a well studied taxonomic group, birds have also been shown in
several cases to work as surrogates for assessing overall biodiversity loss (E.g Garson et al,
2002; Rodrigues and Brooks, 2007; Stotz, et. al., 1996; Kati et al, 2003).
15
A point count methodology has the advantage that it detects higher proportions of the
species present than normally recorded via mist-netting (Blake & Loiselle, 2001). However,
point counts also have several potential limitations and are prone to a variety of biases.
Observer differences (Sauer et al. 1994, Kendall et al. 1996), habitat structure (Diehl 1981,
McShea and Rappole 1997), meteorological conditions (Mayfield 1981, Robbins 1981),
background noise (Simons et al. 2007), time of year (Best 1981, Skirvin 1981) and time of
day, (Robbins 1981, Skirvin 1981) are all factors known to affect detection probability.
Individual species which sing frequently are also far more likely to be detected than those
which sing infrequently, (E.g Farnsworth et al, 2002).
Recent years have seen a large increase in the number of people undertaking volunteering
work in the developing world, as an alternative to study or employment and conservation-
based projects are among the most popular (Year Out Group, 2010). Therefore determining
the capacity of these volunteers to undertake a point count methodology would have wider
applications which are expected to continue to expanding. It is hoped that by applying the
correct model to the data collected and teaching volunteers to a high enough level, a viable
analysis of the differing avian assemblages can also be conducted.
16
Methods
The Yachana Reserve (Bosque Protector) is located in the Napo Province, Ecuador, at
approximately 300m elevation. It is situated in an agricultural and extractive forest matrix.
The local topography is somewhat more undulating than neighbouring areas which may
have been one of the factors which preserved much of the areas of primary forest prior to its
attaining protected status. The presence of both primary and secondary-type forest within a
relatively small area provides an opportunity to explore the comparative biodiversity values
of primary and secondary forest at a small spatial scale. Though a single site analysis may
not be useful to highlight overall trends, the value of each forest type within large mixed
forest fragments has not been well-studied.
Twelve point count locations were distributed across forest of varying levels of disturbance.
Six were located in each primary-type relatively undisturbed and secondary-type disturbed.
The existing trail network was used to for point count locations, since for counts of infinite
radius (which normally record birds from 75m away or more), the influence of the forest
disturbance of trails is very minimal. Point count sites were located every 200m along a
survey transect following similar methodologies (E.g. Lees & Peres, 2006; Edwards et al.,
2010). This distance allowed for spatial independence of sites and minimised pseudo-
replication of individual birds.
At each site staff members and volunteers conducted a daily point count. These began at
around 0600 with each count lasting 15 minutes. During this period observers attempted to
identify all the species they could see or hear in the area independently. A complete set of
twelve point counts was deemed too many to be feasible in a single morning (since bird
song had dropped to virtually nothing by as early as 10am on some mornings). Each
volunteer conducted six sets of counts, on as many occasions as possible, in order to try
and generate a statistically significant and independent set of counts for each individual.
The starting point for each set of point counts was rotated every day as was the order of
points undertaken.
Results
Collected results took a significant amount of time to fully summarise. Therefore all that is
presented here are the results for increasing detection rates of six volunteers. In due course
it is expected that a full summary and analysis of results will be presented including the
results of all volunteers and investigating the differences in the avian communities in primary
and secondary forest.
17
Figure 2.2.1 shows that on an observer’s first survey they show between 0.26-0.45%
congruence with the fully trained staff observer. By the fourth survey congruence was
between 0.31-0.93%, this suggests a degree of improvement with increasing hours training.
The degree of improvement is shown visually on Figure 2.2.2.
Fig. 2.2.2 shows the percentage of congruence with staff member versus hours of training
the observer received up to that point. This graph shows the information contained in the
previous table as a scatter graph. The mean number of species recorded by each observer
(expressed as a percentage of the mean number of species recorded by staff on the same
survey), is plotted against the number of cumulative hours training received by each
18
Fig. 2.2.2 The percentage of congruence with staff member versus hours of training the
observer received up to that point
1.2
Adam Goldberg
1
Chris Morgan
Kristina Spicer
0.8
Edwin Vaca
Discussion
Of the six observers whose results were analysed (those who went out on the most
occasions were chosen), five of these showed a distinct positive correlation between number
of hours training and increased species detection rates (See Fig.2.2.2). Only one of this six
did not reflect this trend and showed a weak negative correlation or no correlation at all
(Kristina Spicer).
The trend found was not analysed for statistical significance. However, it was expected that
a full analysis of a greater amount of data from the project would be likely to show at
statistically significant correlation between hours training and species detection rates. It was
noted that volunteers, even after several hours training, were normally unable to record
much more than eighty percent of the detection rates recorded by staff. It was suspected
that for secondary forest a very high percentage of all the different species detected were
learned by volunteers, but that this was not necessarily reflecting primary forest results,
where the greater diversity of species meant that a smaller proportion of the calls were
recognised.
These initial results seem likely to be statistically significant which is very promising and
suggest that the current methodological is setup correctly in order to produce usable results
for a wider study. Therefore the project will continue to run under the same methodology as
19
it did for the previous phase and it is anticipated that additional results will yield more robust
results of which a full discussion can take place.
3 Mammal Incidentals
Introduction
GVI continues to document mammal species activity in the reserve predominately through
incidental mammal and track sightings. This is confined to incidental recordings due to the
low occurrence of conspicuous diurnal mammals. Excessive mammal surveying has proved
to not be sufficiently productive.
Methods
All mammal species encountered outside of specific mammal surveys were recorded.
Incidental sightings can take place during any of the other survey or project work within the
reserve, or during long walks into the forest. At the occurence of each incidence, the time,
location, date, species, and any other key characteristics or notes are taken and later
entered into a database in camp.
Sightings
During this phase various mammal species were recorded incidentally, whilst groups were
participating in other survey work or walks in the forest. Incidental sightings included
encounters with the Amazon Red Squirrel (Sciurus sp.), Black Agouti (Dasyprocta
fuliginosa), Black-mantled Tamarins (Saguinus nigricollis), Coatis (Nasua nasua), Kinkajou
(Potos flavus), Night Monkeys (Aotus sp.), Common Opossum (Didelphis marsupialis),
Water Opossum (Chironectes minimus) and Water Rat (Nectomys squamipes), Paca (Agouti
paca). Also recorded were various unidentified small rodents found in the amphibian pitfall
traps.
4 Herpetological Research
Two recent multiple taxa assessments, conducted on the cubraca cacao plantations of
Bahia, Brazil (Pardini et al. IN PRESS) and eucalyptus plantations of the Jari forestry project,
Brazil (Barlow et al. 2007), found that responses to structural habitat change were taxon
specific. Barlow et al. (2007) found that four of the fifteen taxa analysed (trees and lianas,
birds, fruit feeding butterflies, and leaf litter amphibians) were found to decrease in species
richness with increasing habitat disturbance. However, five taxa (large mammals, epigiec
arachnids, lizards, dung beetles and bats) exhibit idiosyncratic responses to habitat change
(Barlow et al. 2007). Both studies concluded that responses to structural habitat change will
be species specific, not simply taxon specific. Analysis of a generalised taxon response is
likely to hide a higher level of species specific disturbance responses which are important
when designing conservation strategies (Barlow et al 2007; Pardini et al. 2009). These
studies highlight the importance of performing multiple taxa assessments that are species
specific relating to the conservation value of secondary and plantation forests.
Problem Statement
The Neotropics are estimated to contain nearly 50% of the worlds amphibians (IUCN, 2007)
and 32% of the worlds reptiles (Young et al. 2004), this equates to over 3000 species of
each taxon. Within the continental Neotropics, the 17 countries in Central and South
America, there are 1685 species of amphibian and 296 species of reptiles considered
endangered. Amphibians and reptiles are considered to be the most threatened groups of
terrestrial vertebrates (J. Gardner 2007b). There have been many factors implicated in
threatening populations of amphibians and reptiles, including habitat loss and change, the
virulent Batrachochytrium dendrobatidis pathogen, climate change (Whitfield et al. 2007),
ultraviolet-B radiation (Broomhall et al. 2000), and agrochemical contaminants (Bridges et al.
2000).
Amphibians and reptiles are important primary, mid-level and top consumers in Neotropical
ecosystems; therefore, it is important to understand the responses of these organisms to
structural habitat change (Bell et al. 2006). Despite its apparent severity, the amount of
research time given to studying the impacts of habitat change on amphibian and reptile
21
populations is relatively low. This is especially true in the Neotropics which, despite an
estimated 89% of threatened species being affected by habitat loss, has only been the
subject of 10% of the world’s herpetological studies (Gardner et al 2007a). There is a
general consensus amongst herpetologists that the effect of structural habitat change on
determining amphibian and reptiles and distributions is limited (Pearman, 1997;
Krishnamurthy, 2003; Urbina-Cardona, 2006; Gardner et al, 2007b).
A recent global scale review of the state of amphibian and reptile research regarding
structural habitat change highlighted several serious deficiencies: i) There is currently a
strong study bias away from the Neotropics towards North America and Australia. ii)
Published studies report contradictory responses of amphibian and reptile populations to
habitat change. iii) There are several common limitations in study methodology and analysis
(Gardner et al. 2007a).
Methods
In Phase 102, pitfall data was collected for 10 days (16th April to 25th April) and 15 visual
encounter surveys were conducted from 15th April to 1st June.
Twelve 75m transects in both the primary and secondary locations were established. Care
was taken to space transects sufficiently to avoid psuedoreplication. Transects were marked
with coloured transect tape to avoid unnecessary habitat modification. Where possible, the
transects were located at least 10m from streams and 100m from forest edges to avoid
biases resulting from increases in species richness and abundance, which could result in
confusion about the true effect of structural habitat change on amphibian and reptile
diversity.
Visual encounter surveys have been shown to be one of the most effective methods for
sampling tropical herpetofaunas (Bell et al, 2006). They have been repeatedly shown to
22
yield greater numbers of individuals per effort than other sampling methods in recent
publications (Ernst and Rodel, 2004; Donnelly et al 2005) and GVI’s own preliminary
investigations. Each transect was searched by six observers (strip width = 6m, duration = 1h
30m).
Pitfall Trapping
Twelve pitfall arrays were also established in both primary and secondary forest. Each array
consists of four 25L buckets with 8m long by 50cm high plastic drift fence connecting them in
linear shaped design. When open, the pitfalls were checked once a day.
Particular care was taken to ensure that sampling effort is equal for both primary and
secondary habitats. This ensures maximum comparability in the resultant data sets.
Any amphibians or reptiles encountered through either method were identified in the field
using available literature and released. Any individual which could not be identified was
taken back to the GVI base camp for further analysis. A small proportion of the captured
individuals, including those that could not be identified, were anaesthetised with Lidocaine
and fixed with 10% formalin. All preseserved specimens are stored at the Museo
Ecuatoriano de Ciencias Naturales (MECN).
Surveying primary rainforest habitat is a privileged opportunity; however there is the potential
to negatively affect the ecosystem by passing infections between sites and species. Good
practices are strictly adhered to so as to ensure transmissions are not possible. This is
achieved by systematic cleaning of tools, equipment, and sterile bags are changed when
handling different individuals. Under no circumstances did amphibians or reptiles come in
contact with exposed human skin tissue.
Results
Species Encountered in 101
During this phase, 284 identified reptile and amphibian individuals were encountered,
comprising 19 species of amphibian and 16 species of reptile.
23
Pitfalls in Phase 102
Figure 4.1.1 Number of individuals found in pitfalls in Phase 102
Amphibians and reptiles Amphibians Reptiles
Total 51 38 13
Figure 4.1.2 Number of individuals found on visual encounter surveys in Phase 102
Amphibians and reptiles Amphibians Reptiles
During the whole project to date, 1666 identified reptile and amphibian individuals have been
encountered.
Pitfalls
Figure 4.1.3 Number of individuals found in pitfall traps in total in the project so far
Amphibians and Amphibians Reptiles
reptiles
Total 762 627 135
Figure 4.1.4 Number of individuals found in total for visual encounter surveys in the project
so far
Amphibians and Amphibians Reptiles
reptiles
Total 914 841 73
(approx 7110 mins survey
time with 5/6 searchers)
24
Figure 4.1.5 Distribution of species diversity at each pitfall trap
Pitfall species diversity was projected onto a map of the Yachana Reserve. The projection
shows clearly that there appears to be higher species diversity at the less disturbed ‘primary’
sites as opposed to the ‘secondary’ sites.
Discussion
The amphibian and reptile work continues to provide a wealth of species which are
continuing to show that some species are more prevalent than others and there are certainly
some differences in the numbers and types of species found within different areas of the
reserve. The amphibians Ameerga bilinguis, Pristimantis kichwarum, Pristimantis
lanthanites, Bolitoglossa peruvianus (Dwarf-climbing Salamander) and the lizard Lepsoma
parietale are still found in greater numbers than other species at various habitat types
around the reserve. The diversity projection (Fig. 4.1.5) appears to work well, in future
reports this will be expand to inclued all trapping techniques and surveys.
Data collection is now complete. The sites have been surveyed for one full year. In
following phases work will continue with new pitfall sites and visual encounter survey
transects. As a continuation of this project, the new sites will include riparian habitats in
addition to disturbed and less disturbed habitats.
As data collection is now complete further analysis can begin. This may involve multivariate
analysis such as principal component analysis in addition to decision tree analysis that may
25
be applied to the development of a model used to determine the types of amphibians and
reptiles found in specific habitat types.
5 Butterfly Research
Road systems sharply define and fragment forest ecosystems, resulting in changes to plant
species composition and structure from road edges to the surrounding interior (Bennett,
1991). The presence of roads and trails opens up the forest canopy, creating light gaps,
modifying plant communities and resources available for other species. Butterfly
communities have been shown to be sensitive to environmental variables, such as sunlight,
gaps and edges (Ramos, 2000). Sparrow et al. (1994) found 74% more butterfly species
along a road transect than in undisturbed forest.
Methods
Data collection continued on the established series of 200m transects on the Columbia and
Frontier Trails. The same sampling sites located every 50m continued to be monitored. The
Columbia and Frontier Trails run roughly perpendicular to the road and receive heavy usage
from GVI volunteers, Yachana tourtists and locals. Each sampling site was paired with an
26
undisturbed site located 75m perpendicular to the trail in the forest to assess the impact of
the trails on fruit-feeding nymphalid butterfly communities. Trap sites 1-10 were located on
Frontier while traps 11-20 were on Columbia. Trap sites 1, 12, 11 and 12 were located
alongside the well-used road in proximity to the two trails. The remaining odd-numbered
traps were on the trails while the even-numbered traps were in the forest.
As in the previous phases of the study, two baited traps were suspended at each trap site
approximately 5 metres apart with the base hanging approximately 1.5 meters above the
ground at each sampling site. The traps were baited with mashed, fermented bananas, was
prepared following the methods of DeVries and Walla (1999). New bait was added to the
traps every three days of sampling. Traps were checked daily in the afternoon and
maintained for 14 consecutive days for two sampling periods, 13th-26th April and 19th May-1st
June 2010 for a total of 28 days of sampling.
Captured butterflies were identified to species in the field by GVI volunteers and staff. When
identification in the field was not possible, photos of the specimen where taken for further
study. During previous phases of study butterflies had been marked on the hindwing with
non-toxic permanent marker and replaced in the traps in order to measure escape rates.
Although marking in order to measure recapture rates has continued since the initiation of
the project, the dot codes used to refer to different traps have been inconsistent, rendering a
long period of recapture data unusable. A standardized dot-code was developed in the latter
half of Phase 101, and was continuously used through Phase 102 to effectively mark
butterflies (Fig.5.1.1). Since Nymphalidae and other detritivorous families can have a life
span of three to six months (Florida Museum Of Natural History, 2010; Turner 1971)
recapture data should be considered unsafe for the next phase and carefully monitored until
no further discrepancies from the new dot codes are noted.
27
Figure 5.1.1 The new standardised dot codes introduced in week six of phase 101 and used
consistently through Phase 102.
It is worth noting that although specific, dot-code data is unreliable unless all butterflies
caught continued to be marked before release. However, butterflies are not marked if they
are too small (ie. smaller than Tigridia acesta), or their wings show dramatic effects of wear
(ie. if there are pieces of wing missing) to prevent further damage to the wings. Despite this,
it will still be possible to differentiate between recaptures and newly-caught individuals and
hence avoid any pseudo-replication.
Light levels, relative humidity and temperature were assessed at each sampling site.
However, this was inconsistent in Phase 102; a malfunctioning weather data collector only
allowed for three days in the early part of the phase for weather data to be collected.
Therefore, weather data pertaining to this survey is incomplete for this sampling set.
Since data collection to explore escape rates and the nymphalid-vegetation relationship had
both been undertaken at the outset of the project, it was not necessary to undertake further
vegetation mapping or escape experiments during Phase 102.
Results
Overall, 355 individual butterflies of 51 positively-identified species were trapped during two
14-day sampling periods from April–June 2010 (Figure 5.1.2). Of those, 23 individuals are
still pending identification. No new species were identified for the Yachana Reserve species
list, however those still awaiting identification may produce new reserve species.
28
There were no major differences in the number of individuals found at the three disturbance
levels; slightly fewer individuals (105) were collected at the road sites compared to the trail
and forest trap sites (Figure 5.1.2). Only slight variations were found otherwise and
individuals collected on the trail and forest sites for both Frontier and Columbia Trails were
comparable (Figure 5.1.2).
A preliminary analysis of species diversity by assessing the number of species shows that
there was no difference in the number of species collected in the road and trail disturbance
sites, both with 31 species found at each area over the 28 days sampling period (Figure
5.1.3). However, the preliminary species found at each site differed; Archaeoprepona
demophon (Charaxinae: Preponini), Opsiphanes invirae (Satyrinae: Brassolini) and Colobura
annulata (Nymphalinae: Nyphalini) were predominantly found at the highly-disturbed road
sites. Tigridia acesta (Nymphalinae: Nymphalini), Nessaea hewitsonii (Biblidinae: Epicaliini),
Colobura annulata (Nymphalinae: Nymphalini) and Nessaea obrina (Biblidinae: Epicaliini)
were predominantly found along semi-disturbed trail sites.
Figure 5.1.2 Individual butterfly numbers as distributed in trap sites along the road, on the
trail and in the forest for Frontier and Columbia Trails.
Road 65 40 105
Trail 59 63 122
Forest 63 65 128
Less-disturbed forest trap sites which encompassed more surrounding vegetation and higher
canopy cover demonstrated a higher species diversity overall with 38 species found
collectively at forest trap sites (Figure 5.1.3). Tigridia acesta (Nymphalinae: Nymphalini),
Nessaea hewitsonii (Biblidinae: Epicaliini), Archaeoprepona demophon (Charaxinae:
Preponini) and Caligo idomeneus (Satyrinae: Brassolini), were predominantly found at in
forest traps. Of those 38, 15 species (39%) were only found at forest sites, including Caligo
eurilochus (Satyrinae: Brassolini), Cithaerias aurora (Satyrinae: Haeterini) and Pyrrhogyra
otoldis (Biblidinae: Epiphilini).
29
Figure 5.1.3 Species diversity indicated by number of species collected at each of the
disturbance levels – road, trail and forest for Frontier and Columbia Trails during Phase 102.
Total number of species for the three disturbance levels are indicated in the final “Frontier
and Columbia” column.
Frontier Columbia Frontier and
Columbia
Road 23 19 31
Trail 17 26 31
Forest 27 24 38
Discussion
In phase 101, a total of 187 individuals were collected in the traps; 355 individuals in phase
102 accounts for a 53% increase in the number of individuals trapped in the same 28-day
sampling period. This increase can be a result of a number of factors. The seasonality of
lowland rainforest could affect the number of butterflies. During the months of April and May
2010, there was an increase in the amount of rain compared to the previous phase.
Seasonal effects in the feeding and reproductive cycles of butterflies can account for an
increase at various times of the year. However, this study will need to be continued for over
a year to gain the effects of annual trends in the butterflies feeding and breeding cycles.
This increase could also be an effect of the quality of the bait used; however, no deviations
were made in the process and fermentation times allotted for the preparation of the bait.
Species diversity was markedly higher at the forest trap sites than at the more disturbed trail
and road sites. A higher number of species at forest trap sites, including species found only
at forest sites and lacking at trail and road sites, indicates that a majority of Nymphalidae
butterflies prefer less-disturbed habitats. These sites have much less human traffic than the
other two types of sites; GVI staff and volunteers only enter these site areas when the
project is running, and for very short periods of time. Trail sites are used more heavily on a
regular basis by GVI personnel and locals, and the road is highly active by vehicle traffic.
This indicates that human activity could have a negative effect on the Nymphalidae butterfly
communities on the Yachana Reserve. A higher species diversity at the forest trap sites
could also be attributed to the preference of light levels that reach these sites, as canopy
cover is higher and less light reaches the forest floor, perhaps a preference among many
nymphalid species. This may affect the amount of natural food sources for these butterflies,
as well as plant diversity and host plants for many species, since plant diversity would be
assumed to be higher in the less-disturbed forest away from the trails and road.
30
This project will continue using the same methods as initially set out in the project proposal
(Brimble, 2009) next phase to acquire a larger sample size. A new, comprehensive
Nymphalidae butterfly identification plates have been developed for more accurate
identification on this project, ready for the upcoming Phase 103. Specimens and photos of
the unidentified species have been retained for future identification.
6 Benthic Surveying
The following is a pilot study into the potential use of BMWP score system for the
assessment of stream quality in the Yachana Reserve. The report was composed by a short
term intern, Kristina Spicer.
Introduction
The BMWP (Biological Monitoring Working Party) score system was developed in the UK as
a quick and easy method to assess water quality, using macroinvertebrates as bioindicators.
BMWP score system utilizes the fact that each macroinvertebrate family exhibits different
sensitivity to pollutant and their presence or absence defines level of water quality. Each
family is therefore assigned a sensitivity value ranging from 1, being the most tolerant to 10,
being most sensitive (Stein et.al. 2008). The family level identification makes the index more
practical and applicable through out the world (Cao et.al., 1997); therefore, it has been
successfully applied in many countries. Czerniawska-Kusza, (2005), investigating
macroinvertebrate communities in the lower Nysa Klodzka River catchment in Poland, found
strong potential for application of the BMWP system in Poland. Further, in the tropics Azrina
et.al. (2006) used BMWP index to assess the water quality of the Langat River in Peninsular
Malaysia.
In the tropics, the use of benthic macroinvertebrates for assessment of water quality is yet
not well established, due to the fact that knowledge of their ecology and distribution is still
incomplete (Stein et.al., 2008). However, the necessity for development of biomonitoring
has been recognized and consequently there has been increase in the research and
development of biological monitoring and potential use of BMWP score system in the tropics.
In the Dominican Republic, Soldner et.al. (2004) sampled macroinvertebrates within the
Yacque del Norte River catchment area to determine whether macroinvertebrate monitoring
techniques that are routinely used elsewhere could be successfully applied in the tropics.
They found that, since BMWP scores have been developed for British macroinvertebrates,
not all families found in the study had designated scores and therefore had to be excluded
31
from the statistical analysis. However, they concluded that this is unlikely to have biased the
analysis, as a consistent approach has been used to analyze all sites (Soldner et.al., 2004).
Furthermore in the Neotropics, BMWP index has been used and modified for Costa Rica.
Stein et.al. (2008) used such adapted BMWP-CR index while testing two different sampling
methods in order to determine water quality and possible anthropogenic influences on the
river Do Novillos. In Ecuador, this biological monitoring technique is still not widely applied
and there has not been attempt to adapt BMWP index to Ecuadorian macroinvertebrate
fauna.
In the Yachana Reserve, previously Escolar et.al. (2009) used EPT and Sensitivity Indices to
assess the water quality, though their results were contradictory. Therefore, the aims of this
study were:
To determine whether BMWP index can be applied in the Yachana Reserve.
To assess and compare water quality of primary rainforest stream and stream near
the villages.
To give the account and comparison of diversity of macroinvertebrates in both
streams.
To determine whether kick nets are more efficient and reliable than surber nets in
sampling benthic macroinvertebrates.
Methods
The study was conducted in Yachana Reserve and village of Puerto Rico. Two sites were
selected. The first site was within Stream 1 of the Yachana Reserve in primary forest. The
second site selected, Stream 2, was in close proximity of the community of Puerto Rico.
Stream 1 has been chosen on the assumption that it is of a good quality since there are no
anthropogenic disturbances, while Stream 2 is in close proximity of farmland and is
subjected to uncontrolled pesticide influx. The main criteria in selection of two sites were
safe and easy access, similar width, presence of riffles and 100 m distance from any road.
At each site three measurements of width of the stream were taken and flow velocity was
measured by timing a floating object over a 10m stretch of the river with the stop watch. For
the collection of the macroinvertebrates a hand held net was used. At each site four
samples were taken by employing kick sampling technique. One observer was disturbing
and kicking the substrate for three minutes, while the other was catching dislodged
invertebrates in a net held at a short distance downstream. The content of the net was then
emptied on the tray where another two observers were sorting and placing
macroinvertebrates in the killing jars with 70% ethanol.
32
The macroinvertebrates were sorted in four jars:
1. Coleoptera
2. Trichoptera
3. Ephemeroptera
4. Everything else
The two observers that were collecting samples moved 5, 10 and than 15m upstream, to
avoid biases from sampling disturbances, so that in total four samples were taken. Collected
specimens were taken to the base, where they were identified to family level using Carrera
and Fierro (2001) taxonomic key. Precipitation levels on the days of surveying were
recorded, then BMWP indices for all sites were calculated.
Results
Stream 1 in the primary forest was sampled on two occasions; on the 25th May 2010 and 26th
May 2010 and four samples were taken each day. In total 209 individuals belonging to 19
families were found. The most diverse order was Trichoptera, represented by four different
families, followed by Coleoptera and Ephemeroptera both represented by three families.
The most abundant order was Coleoptera (69 individuals), followed by Trichoptera (53) and
Ephemeroptera (42), (see Appendix 10.3).
Stream 2 was sampled on the 24th May 2010 and 27th May 2010, and four samples in total
were taken. 246 individuals, belonging to 17 families were found. The most diverse order
was Diptera, represented by four families, followed by Coleoptera (three families), and
Ephemeroptera, Odonata, Trichoptera and Oligochaeta, all represented by two families. The
most abundant order was Ephemeroptera (51), followed by Coleoptera (48 individuals) and
Trichoptera (47), (see Appendix 10.3).
Order Oligochaeta of which Annelidae and Tubificidae were present and family
Chironomidae and Simuliidae from order Diptera were only found in stream 2.
Plot 1, at Steam 1 scored 134, while plot 2 scored 119. Mean BMWP index for Stream 1
was 126.5 (see Fig. 6.1.1) which indicates excellent water quality.
33
Plot 1, at Stream 2 scored 90, while plot 2 scored 92. Mean BMWP index for Stream 2 was
91 (see Fig. 6.1.2), which indicates regular quality, eutrophic, medium polluted stream.
Discussion
High BMWP score of Stream 1 is associated with clean, unpolluted conditions in primary
forest. On the contrary, lower BMWP score (91) of Stream 2 was expected, as it is in close
proximity of farm and certain influx of pesticides can be expected. However, as Stream 2 is
not surrounded by vast area of farmland, the medium polluted score fits in with our
expectations. Our results correlate with findings of Azrina et.al. (2006). They found that
pristine upstream stations of Langat River scored high BMWP indices, while downstream
stations which received anthropogenic impact scored lower, indicating lower water quality.
Therefore it can be assumed that BMWP scoring system can be used in and around
Yachana Reserve. However, even though BMWP index has been reported easily applicable
and reliable in assessing water quality in other countries, results obtained from it should be
regarded with some caution (Soldner et.al., 2004). Ideally, it should be adapted to the
country it is used in. Adaptations should include additions of new families and changes in
some scores (Zamora-Munoz et.al., 1995). Since not enough samples were taken, further
statistical analysis of the sample would be unreliable and therefore has not been performed.
Although, it is apparent that order Oligochaeta and family Chironomidae and Simuliidae are
only found in Stream 2, which correlates with findings of Cao et.al. (1997) which stated that
polluted sites, particularly intermediate polluted sites, gain some tolerant species which are
very rare or absent at clean sites. Oligochaeta is known to be able to tolerate pollutants and
their high density is a good indicator of organic pollution (Azrina et.al., 2006). Similarly,
Chironomidae show higher abundance with increase in organic pollution. They appear to be
least affected by environmental changes and have efficient recolonization mechanisms
(Czerniawska-Kusza, 2005).
34
The use of adapted kick nets proved to be effective though, as suggested by Escolar et.al.
(2009) combination of both surber and kick net should be used to yield best results. Also,
macroinvertebrates found in the Stream 1 were significantly smaller than ones found in the
Stream 2. As samples were sorted by untrained volunteers, there is a high chance that high
number of individuals was overlooked and discarded from samples collected in Stream 1.
This potentially resulted in higher number of individuals found in Stream 2.
Furthermore, the identification key used was quite basic and substantial amount of
individuals had to be classed as other, which meant their BMWP score was 0. This
potentially resulted in limited accuracy of the study. To further help with identification
laminated plates from Contreras et.al. (2008) were used, however photos were so shaded
that they were not useful for identification of Ephemeroptera, since their gills, which are key
identification features could not be distinguished.
BMWP score system could be used in Yachana Reserve, although potentially one adapted
to the Neotropics would gather better results. A photograph or diagramatic key with a larger
number of individuals should be used in the future. Ideally, a benthic macroinvertebrate key
for Yachana Reserve should be constructed and potential bioindicators should be identified.
Also, more samples should be taken to allow reliable statistical analysis as well as greater
area should be sampled. Sampling should be done using the combination of surber and kick
nets.
Sampling should also be carried out for a longer period of time to determine whether
seasonal variations of precipitation levels influence macroinvertebrate abundances.
Precipitation levels were taken for this study, although since sampling was done over short
period of time any sort of analysis would probably be inaccurate. Volunteers should also be
given short training before sampling, in order to become familiar with benthic
macroinvertebrates, leading to less individuals being overlooked and discarded while sorting.
Fifteen English classes were given at Puero Rico this phase. This resulted in 60 ‘volunteer
hours’ of teaching, to 22 older students (7-13 years old) and 14 younger students (4-7 years
old). The next expedition will see the continuation of these lessons, augmented by an
occasional tropical ecology class given at the end of each five weeks. The English lessons
and interaction with the Puerto Rico community has had the long term aim of developing and
encorporating environmental education for the children at the school. One conservation
class was given druring the expedition. They addressed the topics: Why is rainforest
Important?, What happens if you cut down the rainforest?, What does GVI do on the
Yachana Reserve?
Five informal English classes were given at Puerto Salazar on Saturday afternoons. The
feedback from both the children and the volunteers was fantastic. We hope to continue and
expand on these classes in the future, however are somewhat tied to time and resources
given that Puerto Salazar is approximately 45 minutes walk away from GVI base camp in the
Yachana Reserve. GVI is aiming to support the communities around the reserve as much
as possible, but also very aware of the limitations due to fluctuations in numbers of
volunteers and therefore do not want to over-commit to programmes with the communities
when there are high numbers of volunteers on base, to then find that if the numbers drop
GVI is unable to maintain the local commitments. For this reason the work with Puerto
36
Salazar will continue on the occasions when it is convenient to both the local community and
the GVI Amazon schedule, with a view to continuing the work in the future.
Avian research will continue, including point counts and mist netting.
Herpetological research will continue, repeating pitfall trapping and visual encounter
surveys, and incorporating the collection of environmental data (temperature, humidity,
air flow and light levels) at each of the surveying sites, so that specific climatic conditions
can be compared.
The butterfly project will continue, examining the effects of road and trail disturbance
upon fruit feeding species, in relation to changes in vegetation.
GVI will continue to participate in exchanges with the Yachana Technical High School.
TEFL at Puerto Rico will continue with a defined focus for each ten week block, for each
age group and the aim is to encourage students to put their learning into practise and get
them conversing in English.
Simple environmental lessons will be continued at the school in Puerto Rico (to be given
in Spanish).
An expansion of teaching will branch out with weekend lessons at the local community of
Puerto Salazar. These lessons will be the basis for a future opportunity of more
structured teaching times within this community.
37
9 References
Allen, T., Ginkbeiner, S.L., and Johnson, D.H., 2004. Comparison of detection rates of
breeding marsh birds in passive and playback surveys at Lacreek National Wildlife refuge,
South Dakota. Waterbirds 27, 277-281.
Bennett, A. F., 1991. Roads, roadsides and wildlife conservation: A review. In: Saunders, D.
A., Hobbs, R. J. (eds.). Nature Conservation 2: The role of corridors. Chipping Norton, NSW,
Australia: Surrey Beatty 99-118.
Daszak, P., Berger, L., Cunningham, A.A., Hyatt, A.D., Green, D.E., Speare. R., 1999.
Emerging infectious diseases and amphibian population declines. Emerging Infectious
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18: 586-608.
Gardner T.A., Fitzherbert E.B., Drewes R.C., Howell K.M., Caro T., 2007. Spatial and
temporal patterns of abundance and diversity of an east African leaf litter amphibian fauna.
Biotropica 39(1):105-113.
Heyer W.R., Donnelly M.A., McDiarmid R.W., Hayek L.A.C., Foster M.S., 1994. Measuring
and Monitoring Biological Diversity - Standard Methods for Amphibians.
Kroodsma, D.E., 1984. Songs of the Alder Flycatcher (Empidonax alnorum) and Willow
Flycatcher (Empidonax traillii) are innate. Auk 101, 13-24.
Lacher, T., 2004. Tropical Ecology, Assessment, and Monitoring (TEAM) Initiative: Avian
Monitoring Protocol version 3. Conservation International, Washington, DC.
www.teaminitiative.org.
Menendez-Guerrero P.A., Ron S.R. and Graham C.H., 2006. Predicting the Distribution and
Spread of Pathogens to Amphibians. Amphibian Conservation 11:127-128.
Ridgely, R.S., Greenfield, P.J., 2001. The birds of Ecuador. Volume I. Status, Distribution,
and Taxonomy. Cornell University Press, New York.
Sutherland, W.J., 1996. Ecological census techniques: a handbook. University press,
Cambridge.
Weldon, C., du Preez, L.H., Hyatt, A.D., Muller, R., Speare, R., 2004. Origin of the
amphibian chytrid fungus. Emerging Infectious Diseases. 10 (Issue 12).
38
9.2 Field Use References
Bartlett, R.D., Bartlett, P., 2003. Reptiles and amphibians of the Amazon. An ecotourist’s
guide. University Press of Florida, Gainsville.
Bollino, M., Onore G., 2001. Butterflies & moths of Ecuador. Volume 10a. Familia:
Papilionidae. Pontificia Universidad Católica del Ecuador, Quito.
Carrera, C., Fierro, K., 2001. Manual de monitoreo los macroinvertebrados acuáticos.
EcoCiencia, Quito.
Carrillo, E., Aldás, S., Altamirano, M., Ayala, F., Cisneros, D. Endara, A., Márquez, C.,
Morales, M., Nogales, F, Salvador, P., Torres, M.L., Valencia, J., Villamarín, F., Yánez, M.,
Zárate, P., 2005. Lista roja de los reptiles del Ecuador. Novum Milenium, Quito.
DeVries, P.J., 1997. The butterflies of Costa Rica and their natural history. Volume II:
Riodinidae. Princeton University Press, Princeton.
Eisenberg, J.F., Redford, K.H., 1999. Mammals of the Neotropics: The central Neotropics.
Volume 3 Ecuador, Peru, Bolivia, Brazil. The University of Chicago Press, Chicago.
Emmons, L.H., Feer, F., 1997. Neotropical rainforest mammals. A field guide, second
edition. The University of Chicago Press, Chicago.
Moreno E., M., Silva del P., X., Estévez J., G., Marggraff, I., Marggraff, P., 1997. Mariposas
del Ecuador. Occidental Exploration and Production Company, Quito.
Ridgely, R.S., Greenfield, P.J., 2001. The birds of Ecuador. Volume I. Status, distribution
and taxonomy. Christopher Helm, London.
Ridgely, R.S., Greenfield, P.J., 2001. The birds of Ecuador. Volume II. A field guide.
Christopher Helm, London.
Tirira S., D., 2001. Libro rojo de los mamíferos del Ecuador. SIMBIOE/EcoCiencia, Quito.
39
9.3 Avifuanal References
Mist Netting
Barlow, Luiz A.M. Mestre, Toby A. Gardner, Carlos A. Peres (2006) The value of primary,
secondary and plantation forests for Amazonian birds Biological Conservation 136(2): 212-
23
Blake and Loiselle (2000) Diversity of birds along an elevational gradient in the Cordillera
Central, Costa Rica The Auk (3)663-686
Blake and Loiselle (2001) Bird assemblages in second and old growth forests costa rica,
persepectives from mist nets and point counts The Auk 118(2): 304-326
Blake and Loiselle (2009) Species Composition of Neotropical Understory Bird Communities:
Local Versus Regional Perspectives Based on Capture Data Biotropica 41( 1): 85-94
Brooks, T.M. et al. (2002) Habitat loss and extinction in the hotspots of biodiversity. Conserv.
Biol. 16, 909–923
Dunn, R.R. (2004) Recovery of faunal communities during tropical forest regeneration.
Conservation. Biology. 18, 302–309
Faria D., Mateus Luı´s Barradas Paciencia, Marianna Dixo, Rudi Ricardo Laps, Julio
Baumgarten, (2007) Ferns, frogs, lizards, birds and bats in forest fragments and shade
cacao plantations in two contrasting landscapes in the Atlantic forest, Brazil Biodiversity
Conservation 16:2335–2357
Gardner, Jos Barlow, Luke W. Parry, and Carlos A. Peres (2007) Predicting the Uncertain
Future of Tropical Forest Species in a Data Vacuum BIOTROPICA 39(1): 25–30
Hawes J., Jos Barlow, Toby A. Gardner, Carlos A. Peres (2008) The value of forest strips for
understorey birds in an Amazonian plantation landscape Biological Conservation 141(9):
2262-2278
Loiselle and Blake (1992) Population Variation in a Tropical Bird Community BioScience 42
(11): 838-845
40
Wright and Muller-Landau (2006) The Future of Tropical Forest Species Biotropica 38(3):
287–301
Point Counts
Alldredge, M., W., Simons, T., R., Pollock, K., H., Factors Affecting Aural Detections of
Songbirds Ecological Applications, 17:3 (Apr., 2007), pp. 948-955
Barlow J., Mestre, L., Gardner, T., A., Peres, C., A., 2007 The value of primary, secondary and
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47
10 Appendices Accipiter superscilious Tiny Hawk**
48
Recurvirostridae Plovers and Lapwings
Gruiformes
Trogoniformes
Pteroglossus inscriptus Lettered Aracari
Trogonidae Trogons and Quetzals
Pteroglossus pluricinctus Many-banded Aracari Pharomachrus pavoninus Pavonine Quetzal
51
Tyrannus savana Fork-tailed Flycatcher Dendroica fusca Blackburnian Warbler
52
Dichrozona cincta Banded Antbird
Xenarthra
Mymotherula brahyrura Pygmy Antwren**
Megalonychidae
Phlegopsis erythroptera Reddish-winged Bare-eye
Dasypodidae Armadillos
Thamnomanes ardesiacus Dusky-throated Antshrike
53
Mustelidae Weasel
Felidae Cat
Callitrichidae Gekkonidae
54
Prionodactylus oshaughnessyi White-striped eyed lizard Oxyrhopus formosus Yellow-headed calico snake
Enyalioides laticeps Amazon forest dragon Pseustes sulphureus Giant bird snake
Mabuya nigropunctata Bothriopsis bilineata bilineata Western Striped Forest Pit Viper
Black-spotted skink
Bothrops atrox Fer-de-lance
Amazonian Hog-Nosed
Tropiduridae Bothrops hyoprora Lancehead
Tropidurus (Plica) plica Collared tree runner Lachesis muta muta Amazon Bushmaster
Kentropyx pelviceps Forest whiptail Boa constrictor imperator Common boa constrictor
Tupinambis teguixin Golden tegu Corallus enydris enydris Amazon tree boa
Snakes
Colubridae Elapidae
Atractus elaps Earth snake sp3 Micurus hemprichii ortonii Orange-ringed coral snake
Atractus occiptoalbus Earth snake sp2 Micrurus lemniscatus Eastern ribbon coral snake
Chironius fuscus Olive whipsnake Micrurus spixii spixxi Central amazon coral snake
Chironius scurruls Rusty whipsnake Micurus surinamensis surinamensis Aquatic coral snake
Leptophis cupreus Brown parrot snake Bolitoglossa peruviana Dwarf climbing salamander
55
Rhinella marina Cane Toad Phyllomedusa tarsius Warty Monkey Frog
Rhinella complex margaritifer Crested Forest Toad Phyllomedusa tomopterna Barred Monkey Frog
Rhinella dapsilis Sharp-nosed Toad Phyllomedusa vaillanti White-lined monkey Tree Frog
Dendrophryniscus minutus Orange bellied leaf toad Trachycephalus venulosus Common milk Tree Frog
Centrolene sp. undescribed Glass Frog Chiasmocleis bassleri Bassler's Sheep Frog
Ameerega ingeri Ruby Poison Frog Prystimantis conspicillatus Chirping Robber Frog
Colostethus marchesianus Ucayali Rocket Frog Prystimantis sulcatus Broad-headed Rain Frog
Dendrobates duellmani Duellmans Poison Frog Prystimantis variabilis Variable Rain Frog
Cruziohyla craspedopus Amazon Leaf Frog Engystomops petersi Painted Forest Toadlet
cf. Sphaenorhychus carneus Pygmy hatchet-faced Tree Frog Leptodactylus andreae Cocha Chirping Frog
Dendropsophus bifurcus Upper Amazon Tree Frog Leptodactylus knudseni Rose-sided Jungle Frog
Dendropsophus rhodopeplus Red Striped Tree Frog Leptodactylus rhodomystax Moustached Jungle Frog
Dendropsophus triangulium Variable Clown Tree Frog Leptodactylus wagneri Wagneris Jungle Frog
Hemiphractus aff. scutatus Casque-headed Tree Frog Lithodytes lineatus Painted Antnest Frog
Hylomantis hulli
Ranidae True Frogs
Hypsiboas boans Gladiator Tree Frog
Rana palmipes Neotropical Green Frog
Hypsiboas calcarata Convict Tree Frog
Trachycephalus resinifictrix Amazonian Milk Tree Frog Euchroma gigantea Giant Ceiba Borer
56
Homoeotelus d'orbignyi Pleasing Fungus Beetle Eunica alpais
Eunica amelio
Hamadryas laodamia
Eurysternus confusus
Nessaea batesii
Eurysternus foedus
Nessaea hewitsoni
Eurysternus inflexus
Nica flavilla
Eurysternus plebejus
Panacea prola
Panacea regina
Grylloptera
Paulogramma peristera
Panacanthus cuspidatus Spiny Devil Katydid
Phrrhogyra amphiro
Hemiptera
Pyrrhogyra crameri
Dysodius lunatus Lunate Flatbug
Pyrrhogyra cuparina
Pyrrhogyra cf nasica
Lepidoptera
Pyrrhogyra otolais
Lycaenidae
Temenis laothoe
Celmia celmus
Janthecla sista
Charaxinae
Thecla aetolius
Agrias claudina
Thecla mavors
Archaeoprepona amphimachus
Colobura annulata
Archaeoprepona demophon
Colobura dirce
Archaeoprepona demophon muson
Archaeoprepona licomedes
Nymphalidae
Consul fabius
Apaturinae
Hypna clytemnestra
Doxocopa agathina
Memphis arachne
Doxocopa griseldis
Memphis oenomaus
Doxocopa laurentia
Memphis philomena
Doxocopa linda
Memphis offa
Prepona eugenes
Biblidinae
Prepona dexamenus
Biblis hyperia
Prepona laertes
Callicore cynosura
Prepona pheridamas
Catonephele acontius
Zaretis isidora
Catonephele esite
Zaretis itys
Catonephele numilia
Diaethria clymena
Cyrestinae
Dynamine aerata
Marpesia berania
Dynamine arthemisia
Marpesia crethon
Dynamine athemon
Marpesia petreus
Dynamine gisella
Appias Drusilla
Adelpha erotia
Ithomia amarilla
Phyciodes plagiata
Heliconiini
58
Catoblepia generosa Magneuptychia tiessa
Cithaerias menander
Parides sesostris
Morphini
Calospila emylius
59
Lyropteryx appolonia
Mesophthalma idotea
Mesosemia loruhama
Mesosemia latizonata
Napaea heteroea
Nymphidium mantus
Nyphidium nr minuta
Nymphidium lysimon
Nymphidium balbinus
Nymphidium caricae
Nymphidium chione
Pandemos Pasiphae
Perophtalma lasus
Pirascca tyriotes
Rhetus arcius
Rhetus periander
60
10.2 Yachana Reserve Map
61
10.3 Complete Benthic Surveying Results
Legend:
P1= Abundances at site 1 at Stream 1 (25/05/10)
P2= Abundances at site 2 at Stream 1 (26/05/10)
S1= Abundances at site 1 at Stream 2 (24/05/10)
S2= Abundances at site 2 at Stream 2 (27/05/10)
62