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010005 (2009)
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Using Monte Carlo simulations and finite-size scaling analysis, the critical behavior of
attractive rigid rods of length k (k-mers) on square lattices has been studied. An ordered
state, with the majority of k-mers being horizontally or vertically aligned, was found. This
ordered phase is separated from the disordered state by a continuous transition occurring at
a critical density θc , which increases linearly with the magnitude of the lateral interactions.
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In a recent paper, Fischer and Vink [15] indi- der survives in the presence of attractive lateral in-
cated that the transition studied in Refs. [10–14] teractions; (ii) the critical density shifts to higher
corresponds to a liquid-gas transition, rather than values as the magnitude of the lateral interactions
I-N. This interpretation is consistent with the 2D- is increased; and (iii) the continuous transition be-
Ising critical behavior observed for monodisperse comes first order for interaction strength w > wc
rigid rods on square lattices [11]. This point will (in absolute values).
be discussed in more detail in Sec. III. The outline of the paper is as follows. In Sec.
In contrast to the systems studied in Refs. [10– II we describe the lattice-gas model and the sim-
14], many rod-like biological polymers are formed ulation scheme. In Sec. III we present the MC
by monomers reversibly self-assembling into chains results. Finally, the general conclusions are given
of arbitrary length. Consequently, these systems in Sec. IV.
exhibit a broad equilibrium distribution of fila-
ment lengths. A model of self-assembled rigid II. Lattice-gas model and Monte
rods has been recently considered by Tavares et
al. [16]. The authors focused on a system composed
Carlo simulation scheme
of monomers with two attractive (sticky) poles that We address the general case of adsorbates assumed
polymerize reversibly into polydisperse chains and, to be linear rigid particles containing k identical
at the same time, undergo a continuous I-N phase units (k-mers), with each one occupying a lattice
transition. The obtained results revealed that ne- site. Small adsorbates would correspond to the
matic ordering enhances bonding. In addition, the monomer limit (k = 1). The distance between k-
average rod length was described quantitatively in mer units is assumed to be equal to the lattice con-
both phases, while the location of the ordering tran- stant; hence exactly k sites are occupied by a k-mer
sition, which was found to be continuous, was pre- when adsorbed (see Fig. 1). The surface is repre-
dicted semiquantitatively by the theory. sented as an array of M = L × L adsorptive sites
Beyond the differences between lattice geometry in a square lattice arrangement, where L denotes
and the characteristics of the rods (self-assembled the linear size of the array. In order to describe
or not), one fundamental feature is preserved in the system of N k-mers adsorbed on M sites at a
all the studies mentioned above. This is the as- given temperature T , let us introduce the occupa-
sumption that only excluded volume interactions tion variable ci which can take the values ci = 0
between the rods are considered (except in Ref. [16], if the corresponding site is empty and ci = 1 if
where monomers with two attractive bonding sites the site is occupied. On the other hand, molecules
polymerize into polydisperse rods). Moreover, one adsorb or desorb as one unit, neglecting any pos-
often encounters phrases in the literature, such sible dissociation. Under these considerations, the
as “This theory [Onsager’s theory] shows that re- Hamiltonian of the system is given by
pulsive interactions [excluding volume interactions]
alone can lead to long-range orientational nematic
X X
H=w ci cj − N (k − 1)w + o ci (1)
order, disproving the notion that attractive inter- hi,ji i
actions are a prerequisite” [17], which could be am-
biguous with respect to the role that attractive lat- where w is the nearest-neighbor (NN) interaction
eral interactions between the rods should play in constant which is assumed to be attractive (nega-
reinforcing (or not) the nematic order. tive), hi, ji represents pairs of NN sites and o is
In this context, it is of interest and of value to the energy of adsorption of one given surface site.
inquire how the existence of lateral interactions be- The term N (k − 1)w is subtracted in eq. (1) since
tween the rods influences the phase transition oc- the summation over all the pairs of NN sites over-
curring in the system. The objective of this paper estimates the total energy by including N (k − 1)
is to provide a thorough analysis in this direction. bonds belonging to the N adsorbed k-mers. Be-
For this purpose, an exhaustive study of the phase cause the surface was assumed to be homogeneous,
transition occurring in a system of attractive rigid the interaction energy between the adsorbed dimer
rods deposited on square lattices was performed. and the atoms of the substrate o was neglected for
The results revealed that (i) the orientational or- the sake of simplicity.
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