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AWS Re:Invent 2019

Re:Cap
Chris Fregly

KubeFlow + GPU +
Keras/TensorFlow 2.0 + TF
Extended (TFX) +
Kubernetes + PyTo...
Chris Fregly

Hands-on Learning with

KubeFlow +
Keras/TensorFlow 2.0 + TF
Extended (TFX) + ...
Chris Fregly

Swift for TensorFlow -

27 of 71 
Tanmay Bakshi - Advanced
Spark and TensorFlow
2,511 views Meetup -...
Hands-on Learning with KubeFlow + Chris Fregly

Keras/TensorFlow 2.0 + TF Extended (TFX) +

PyTorch + TensorFlow +
Kubernetes + PyTorch + XGBoost + Airflow + RedisAI + Streams --

MLflow + Spark + Jupyter + TPU Advanced Spark and

TensorFlow Mee...
Chris Fregly
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TensorFlow Encrypted +
Chris Fregly, Founder @ PipelineAI, Databricks, Netflix, O'Reilly Author +Redis Streams + RedisAI -
 Following Advanced Spark and
TensorFl...
Chris Fregly
  

Spark SQL Catalyst

Published on Jun 17, 2019
Optimizer, Custom
Expressions, UDFs -
Title ...
Advanced Spark and T...
Hands-on Learning with KubeFlow + Keras/TensorFlow 2.0 + TF Extended
Chris Fregly

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philipphilip at philipphilip

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5 months ago

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10 months ago

 Hands-on Learning with KubeFlow +

Keras/TensorFlow 2.0 + TF Extended (TFX) +
Kubernetes + PyTorch + XGBoost + Airflow + MLflow +
Spark + Jupyter + TPU
1. End-to-End ML Pipelines TFX + KubeFlow + Airflow Chris Fregly Founder @ .
2. Founder @ PipelineAI Real-time Machine Learning and AI in Production Former Databricks,
Netflix Apache Spark Contributor O’Reilly Author High Performance TensorFlow in Production
Meetup Organizer Advanced Spark and TensorFlow Meetup Who Am I? (@cfregly)
3. Advanced Spark and TensorFlow Meetup (Global, Monthly Events)
https://meetup.com/Advanced-Spark-and-TensorFlow-Meetup
4. Community Edition https://community.pipeline.ai
5. 1 OK with Command Line? 2 OK with Python? 3 OK with Linear Algebra? Who are you? 4 OK
with Docker? 6 5 OK with Jupyter Notebook?
6. Note #1 of 10 IGNORE WARNINGS & ERRORS Everything will be OK!
7. Note #2 of 10 THERE IS A LOT OF MATERIAL HERE Many opportunities to explore on your
own.
8. Note #3 of 10 YOU HAVE YOUR OWN INSTANCE 16 CPU, 104 GB RAM, 200GB SSD And
access to TPUv3 Cluster
9. Note #4 of 10 DATASETS Chicago Taxi Dataset Fashion MNIST (and various others)
10. Note #5 of 10 SOME NOTEBOOKS TAKE MINUTES Please be patient. We are using large
datasets!
11. Note #6 of 10 QUESTIONS? Post questions to Zoom chat or Q&A. Antje and I will answer
soon. Antje Barth =>
12. Note #7 of 10 KUBEFLOW IS NOT A SILVER BULLET There are still gaps in the pipeline.
(But the gaps are shrinking.)
13. Note #8 of 10 THIS IS NOT CLOUD DEPENDENT* *Except for 2 small exceptions…
Patches are underway.
14. Note #9 of 10 PRIMARILY TENSORFLOW 1.x TF 2.x is not yet fully supported by TFX (We
have a section on TF 2.x)
15. Note #10 of 10 SHUTDOWN EACH NOTEBOOK AFTER We are using complex browser
voo-doo.
16. System 6 System 5System 4 Training At Scale System 3 System 1 Data Ingestion Data
Analysis Data Transform Data Validation System 2 Build Model Model Validation Serving
Logging Monitoring Roll-out Data Splitting Ad-Hoc Training Why TFX and Why KubeFlow?
Improve Training/Serving Consistency Unify Disparate Systems Manage Pipeline Complexity
Improve Portability Wrangle Large Datasets Improve Model Quality Manage Versions
Composability Distributed Training Configure
17. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with Airflow
and KubeFlow Agenda Hyper-Parameter Tuning with KubeFlow Deploy Notebook with
Kubernetes 2 3 4 5
18. Bonus Extras! 6 TPUs MLflow RedisAI + TensorFlow + PyTorch TensorFlow 2.0 TensorFlow
Privacy Libraries 7 8 9 10
19. Hands On 00_Explore_Environment
20. 1.1 Kubernetes TensorFlow Extended (TFX) Airflow ML Pipelines 1.0 Environment Overview
KubeFlow ML Pipelines 6 Hyper-Parameter Tuning (Katib) Prediction Traffic Router (Istio) 1.2 1.3
1.4 1.5 1.6
21. 1.1 Kubernetes Kubernetes NFS Ceph Cassandra MySQL Spark Airflow Tensorflow Caffe
TF-Serving Flask+Scikit Operating system (Linux, Windows) CPU Memory DiskSSD GPU FPGA
ASIC NIC Jupyter GCP AWS Azure On-prem Namespace Quota Logging Monitoring RBAC
22. Hands On 01_Explore_Kubernetes_Cluster
23. 1.2 TensorFlow Extended (TFX) Feature Load Feature Analyze Feature Transform Model
Train Model Evalute Model Deploy Reproduce Training
24. 1.3 Airflow ML Pipelines
25. 1.4 KubeFlow ML Pipelines
26. 1.5 Hyper-Parameter Tuning (Katib)
27. 1.6 Prediction Traffic Routing (Istio)
28. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with Airflow
and KubeFlow Agenda Hyper-Parameter Tuning with KubeFlow Deploy Notebook with
Kubernetes 2 3 4 5
29. 2.1 TFX Internals 2.0 TFX Components 6 Feature Load Feature Analyze Feature Transform
Model Train Model Evaluate Model Deploy Reproduce Training 2.2 TFX Libraries 2.2 TFX
Components
30. 2.1 TFX Internals Driver/Publisher Moves data to/from Metadata Store Executor Runs the
Actual Processing Code Metadata Store Artifact, execution, and lineage Info Track inputs &
outputs of all components Stores training run including inputs & outputs Analysis, validation, and
versioning resultsc Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training
31. 2.2 TFX Libraries 2.2.1 TFX Components Use These Core TFX Libraries: TensorFlow Data
Validation (TFDV) TensorFlow Transform (TFT) TensorFlow Model Analysis (TFMA) TensorFlow
Metadata (TFMD) + ML Metadata (MLMD) 2.2.2 2.2.3 2.2.4
32. 2.2.1 TFX Libraries - TFDV TensorFlow Data Validation (TFDV) Find Missing, Redundant &
Important Features Identify Features with Unusually-Large Scale `infer_schema()` Generates
Schema Describe Feature Ranges Detect Data Drift Feature Load Feature Analyze Feature
Transform Model Train Model Evaluate Model Deploy Reproduce Training Uniformly Distributed
Data è ç Non-Uniformly Distributed Data
33. Hands On 02_TensorFlow_Data_Validation (TFDV)
34. 2.2.2 TFX Libraries - TFT TensorFlow Transform (TFT) Preprocess `tf.Example` data with
TensorFlow Useful for data that requires a full pass Normalize all inputs by mean and std dev
Create vocabulary of strings è integers over all data Bucketize features based on entire data
distribution Outputs a TensorFlow graph Re-used across both training and serving Uses Apache
Beam (local mode) for Parallel Analysis Can also use distributed mode
`preprocessing_fn(inputs)`: Primary Fn to Implement Feature Load Feature Analyze Feature
Transform Model Train Model Evaluate Model Deploy Reproduce Training import tensorflow as tf
import tensorflow_transform as tft def preprocessing_fn(inputs): x = inputs['x'] y = inputs['y'] s =
inputs['s'] x_centered = x - tft.mean(x) y_normalized = tft.scale_to_0_1(y) s_integerized =
tft.compute_and_apply_vocabulary(s) x_centered_times_y_normalized = x_centered *
y_normalized return { 'x_centered': x_centered, 'y_normalized': y_normalized,
'x_centered_times_y_normalized':x_centered_times_y_normalized, 's_integerized':
s_integerized }
35. Hands On 03_TensorFlow_Transform (TFT)
36. 2.2.3 TFX Libraries - TFMA TensorFlow Model Analysis (TFMA) Analyze Model on Different
Slices of Dataset Track Metrics Over Time (“Next Day Eval”) `EvalSavedModel` Contains Slicing
Info TFMA Pipeline: Read, Extract, Evaluate, Write ie. Ensure Model Works Fairly Across All
Users Feature Load Feature Analyze Feature Transform Model Train Model Evaluate Model
Deploy Reproduce Training
37. Hands On 04_TensorFlow_Model_Analysis (TFMA)
38. 2.2.4 TFX Libraries – Metadata TensorFlow Metadata (TFMD) ML Metadata (MLMD) Record
and Retrieve Experiment Metadata Artifact, Execution, and Lineage Info Track Inputs / Outputs
of All TFX Components Stores Training Run Info Analysis and Validation Results Model
Versioning Info Feature Load Feature Analyze Feature Transform Model Train Model Evaluate
Model Deploy Reproduce Training
39. 2.3 TFX Components ExampleGen StatisticsGen SchemaGen ExampleValidator Evaluator
Transform ModelValidator Trainer Model Pusher2.3.92.3.1 2.3.2 2.3.3 2.3.4 2.3.5 2.3.6 2.3.7
2.3.8 Slack (!!)2.3.10
40. 2.3.1 ExampleGen Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Load Training Data Into TFX Pipeline Supports
External Data Sources Supports CSV and TFRecord Formats Converts Data to tf.Example Note:
TFX Pipelines require tf.Example (?!) Difficult to use non-TensorFlow models like XGBoost from
tfx.utils.dsl_utils import csv_input from
tfx.components.example_gen.csv_example_gen.component import CsvExampleGen examples
= csv_input(os.path.join(base_dir, 'data/simple')) example_gen =
CsvExampleGen(input_base=examples)
41. 2.3.2 StatisticsGen Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Generates Statistics on Training Data Consumes
tf.Example instances from tfx import components compute_eval_stats =
components.StatisticsGen( input_data=examples_gen.outputs.eval_examples, name='compute-
eval-stats' )
42. 2.3.3 SchemaGen Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Schema Needed by Some TFX Components Data
Types, Value Ranges, Optional, Required Consumes Data from StatisticsGen Auto-gen
`schema.proto` from training data Schema used by TFDV, TFT, TFMA Libraries Uses TFDV
Library to infer schema Best effort and basic Human should verify feature { name: "age"
value_count { min: 1 max: 1 } type: FLOAT presence { min_fraction: 1 min_count: 1 } } from tfx
import components infer_schema = components.SchemaGen(
stats=compute_training_stats.outputs.output)
43. 2.3.4 ExampleValidator Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Identifies Anomalies in Training Data Used with
serving data to detect drift / skew Uses StatisticsGen and SchemaGen Outputs Produces
Validation Results Uses TFDV Library for Input Validation feature { name: "age" value_count {
min: 1 max: 1 } type: FLOAT presence { min_fraction: 1 min_count: 1 } } from tfx import
components infer_schema = components.SchemaGen(
stats=compute_training_stats.outputs.output )
44. 2.3.5 Transform Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Uses Data from ExampleGen and SchemaGen
Transformations Become Part of TF Graph (!!) Helps Avoid Training/Serving Skew Uses TFT
Library for Transformations Designed for Transformations that Require Full Pass Through Entire
Dataset Global Reduction Across All Batches Create Word Embeddings & Vocabs String <=>
Index Conversion Normalize & Bucketize PCA Feature-Crossing def preprocessing_fn(inputs): #
inputs: map from feature keys # to raw not-yet-transformed features # outputs: map from string
feature key # to transformed feature operations
45. 2.3.6 Trainer Feature Load Feature Analyze Feature Transform Model Train Model Evaluate
Model Deploy Reproduce Training Trains / Validates tf.Examples from Transform Uses
schema.proto from SchemaGen Produces SavedModel and EvalSavedModel Uses Core
TensorFlow Python API Works with TensorFlow 1.x Estimator API TensorFlow 2.0 Keras Support
Coming Soon from tfx import components trainer = components.Trainer(
module_file=taxi_pipeline_utils, train_files=transform_training.outputs.output,
eval_files=transform_eval.outputs.output, schema=infer_schema.outputs.output,
tf_transform_dir=transform_training.outputs.output, train_steps=10000, eval_steps=5000,
warm_starting=True )
46. 2.3.7 Evaluator Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Uses EvalSavedModel from Trainer Writes Analysis
Results to ML Metadata Store Uses TFMA Library for Analysis TFMA Uses Apache Beam to
Scale Analysis from tfx import components import tensorflow_model_analysis as tfma
taxi_eval_spec = [ tfma.SingleSliceSpec(), tfma.SingleSliceSpec(columns=['trip_start_hour']) ]
model_analyzer = components.Evaluator( examples=examples_gen.outputs.eval_examples,
eval_spec=taxi_eval_spec, model_exports=trainer.outputs.output)
47. 2.3.8 ModelValidator Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Validate Models from Trainer Uses Data from
SchemaGen and StatisticsGen Compares New Models to Baseline Baseline == current model in
production New Model is Good if Meets/Exceeds Metrics If Good, Notify Pusher to Deploy New
Model Writes Validation Results to Metadata Store import tensorflow_model_analysis as tfma
taxi_mv_spec = [tfma.SingleSliceSpec()] model_validator = components.ModelValidator(
examples=examples_gen.outputs.output, model=trainer.outputs.output)
48. 2.3.9 Model Pusher (Deployer) Feature Load Feature Analyze Feature Transform Model
Train Model Evaluate Model Deploy Reproduce Training Push Good Model to Deployment
Target Uses Trained SavedModel Writes Version Data to Metadata Store from tfx import
components pusher = components.Pusher( model_export=trainer.outputs.output,
model_blessing=model_validator.outputs.blessing, serving_model_dir=serving_model_dir)
49. 2.3.10 Slack Component (!!) Feature Load Feature Analyze Feature Transform Model Train
Model Evaluate Model Deploy Reproduce Training Runs After ModelValidator Adds Human-in-
the-Loop Step to Pipeline TFX Sends Message to Slack with Model URI Asks Human to Review
the New Model Respond ‘LGTM’, ‘approve’, ‘decline’, ‘reject’ Requires Slack API Setup /
Integration export SLACK_BOT_TOKEN={your_token} _channel_id = 'my-channel-id'
_slack_token = os.environ['SLACK_BOT_TOKEN’] slack_validator = SlackComponent(
model_export=trainer.outputs.output, model_blessing=model_validator.outputs.blessing,
slack_token=_slack_token, channel_id=_channel_id, timeout_sec=3600, )
https://github.com/tensorflow/tfx/tree/master
/tfx/examples/custom_components/slack/slack_component
50. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with Airflow
and KubeFlow Agenda Hyper-Parameter Tuning with KubeFlow Deploy Notebook with
Kubernetes 2 3 4 5
51. 3.0 ML Pipelines with Airflow and KubeFlow Feature Load Feature Analyze Feature
Transform Model Train Model Evaluate Model Deploy 3.1 Airflow KubeFlow3.2
52. 3.1 Airflow 6 Feature Load Feature Analyze Feature Transform Model Train Model Evaluate
Model Deploy Reproduce Training Most Widely-Used Workflow Orchestrator Define Execution
Graphs in Python Decent UI Good Community Support
53. Hands On 05_Airflow_ML_Pipelines (Chicago Taxi Dataset)
54. Hands On 06_Airflow_Feature_Analysis
55. Hands On 07_Airflow_Model_Analysis
56. 3.2 KubeFlow 6 Feature Load Feature Analyze Feature Transform Model Train Model
Evaluate Model Deploy Reproduce Training Pipelines Based on Argo CI/CD Project from Intuit
TFJob Supports Distributed Training KubeFlow Fairing Project (!!) Run a notebook as a
production job Deploy training code with dependencies
57. Hands On 08_Simple_KubeFlow_ML_Pipeline
58. Hands On 09_Advanced_KubeFlow_ML_Pipeline (Chicago Taxi Dataset)
59. Hands On 10_Distributed_TensorFlow_Job
60. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with Airflow
and KubeFlow Agenda Hyper-Parameter Tuning with KubeFlow Deploy Notebook with
Kubernetes 2 3 4 5
61. 4.0 Hyper-Parameter Tuning 6 Experiment Single Optimization Run Single Objective
Function Across Runs Contains Many Trials Trial List of Param Values Suggestion Optimization
Algorithm Job Evaluates a Trial Calculates Objective Feature Load Feature Analyze Feature
Transform Model Train Model Evaluate Model Deploy Reproduce Training
62. Hands On 11_Hyper_Parameter_Tuning
63. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with Airflow
and KubeFlow Agenda Hyper-Parameter Tuning with KubeFlow Deploy Notebook with
Kubernetes 2 3 4 5
64. 5.0 Deploy Notebook as Job Feature Load Feature Analyze Feature Transform Model Train
Model Evaluate Model Deploy Reproduce Training 6 5.1 Wrap Model in a Docker Image Deploy
Job to Kubernetes5.2
65. 5.1 Create Docker Image Feature Load Feature Analyze Feature Transform Model Train
Model Evaluate Model Deploy Reproduce Training
66. 5.2 Deploy Notebook as Job Feature Load Feature Analyze Feature Transform Model Train
Model Evaluate Model Deploy Reproduce Training
67. Hands On 12_Deploy_Xgboost_Notebook
68. 1 Setup Environment with Kubernetes TensorFlow Extended (TFX) ML Pipelines with TFX,
Airflow, and KubeFlow Agenda Hyper-Parameter Tuning with TFX and KubeFlow Deploy
Notebook with Kubernetes 2 3 4 5
69. Bonus Extras! 6 TPUs MLflow RedisAI + TensorFlow + PyTorch TensorFlow 2.0 TensorFlow
Privacy Libraries 7 8 9 10
70. Thank you! https://pipeline.ai @cfregly @PipelineAI
71. Upcoming Hands-On Workshops

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