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BIOLOGY
Core Practical (IAL)
…
TIPS!
- Precise: A measurement with very little spread about the mean value. One with a lot of decimal
places.
- Reliable: The results can be repeated. The reliability of data within a single investigation can be
improved by carrying out repeat measurements.
- Valid: Measurements made are affected by a single independent variable only. They are not valid
if the investigation is flawed and control variables have been allowed to change.
· When drawing a table to record data, be sure to include the original observed measurements that
would be recorded during the experiments. You might include additional columns for calculated values
such as a difference or percentage change.
· One purpose of preliminary practical work is to determine appropriate conditions or values of the
controlled variables for the main data collection phase of the investigation. You should refer to specific
conditions and variables that are relevant to your investigation.
· Hypotheses and statistical tests make use of specific and precise scientific language. Use the correct
terminology of significant difference (T test – when testing two different discrete data sets)
or significant correlation (Spearman’s Rank correlation test – when testing for correlation
between two variables) to formulate a good null hypothesis.
· Make sure that you directly answer the question. If you are describing changes from the usual
course of events, be specific about the changes and describe their nature by using terms such as more /
fewer / greater / slower.
· When describing a method the phrase 'record the results' is very vague and should be avoided.
Specify exactly what should be recorded: for example, in the case of habituation, record the time
taken for the snail to fully re-emerge from its shell.
- X factor has not been taken into consideration e.g. health, age, gender, mass…
- When measuring the colour of the solution make sure to use a suitable reference cuvette / solution
UNIT 1
· Why Daphnia?
- Daphnia are small and show the results of the experiment quickly
- They have simple nervous systems so are less likely to feel pain
- They are abundant so easy to get hold of / No damage to environment when a few are removed
from it
- Volume of solution
- Time of acclimatisation
- Daphnia must be the same age / size
- Counting time
· Method:
- Independent variable: Caffeine concentration
- Place a Daphnia in each of 5 different solutions (4 different concentrations of caffeine and one with
distilled water to act as a control)
- Immobilize the Daphnia using a little cotton wool in a cavity slide and observe under microscope
Caffeine also affects the ventricles, leading to an increase in the rate of contraction and relaxation of
each heart beat. This means that, as well as beating faster, the heart's individual beats are associated
with an increased cardiac output.
· Variables to be controlled:
- Mass of fruit / age / source / …
- Temperature
· Method:
- Independent variable: Fruit juice
- Fill a plastic syringe with juice and add drops to the DCPIP until the blue of the DCPIP is lost. Record
the volume of juice added
- To calculate the actual Vitamin C concentration, the DCPIP solution must be calibrated. A solution
of known Vitamin C concentration is added to 1cm3 of DCPIP until it is decolourised and the volume
recorded.
- Conc. of Vitamin C in juice = (Con. of Vitamin C solution x Volume of Vitamin C solution needed to
decolourise 1cm3 DCPIP) ÷ Volume of fruit juice needed to decolourise 1cm3 DCPIP
· Limitations:
- Difficulty in controlling temperature
- End point difficult to judge as needs to be just when blue colour disappears especially in highly
coloured juices
- Age
- Storage
- Duration
- pH
- Bile salts
- pH
· Method:
- Independent variable: Temperature of water
- Using a cork borer and knife, cut 5 pieces of beetroot equal in mass and size
- Rinse the beetroot pieces with water and gently pat them dry with tissue before using them as,
when cutting, pigment is released from broken cells and must be removed before starting or solutions
will be darker than they should
- Place one piece into each of 5 tubes and add 5 1cm3 water to each one
- Place each tube into a water bath of different temperature (e.g. 15, 20, 25, 30, 35)
· Results and reasons: As temperature increases, % transmission slightly increases. This is due to
membrane molecules gaining more heat energy and vibrating more, creating large gaps in the
membrane that enable dye to be released. Proteins in membrane may become denatured, leaving large
pores through which the dye leaks.
· Limitations:
- Pigment is not equally distributed throughout the beetroot
- Volume of enzyme
- Volume of substrate
- Concentration of substrate
- pH
· Method:
- Take 5 test tubes. In 4, place increasing volumes of trypsin solution e.g. (1, 2, 3, 4 cm3 ) and make
up the volume to 4 cm3 using distilled water. The other test tube should be filled with 4 cm3 of water to
act as a control.
- Add 5 of milk powder (casein solution) as substrate and start the stopwatch
- Measure the cloudiness of the solution over time using a colorimeter (every 30 secs for 10 minutes)
against water as a reference / control
· As concentration of enzyme increases, rate of reaction increases up to a point, where all enzyme has
metabolised all substrate immediately
UNIT 2
5. Observing Mitosis
· Safety:
- Risk of injury to hands by sharp knife or mounted needle so wear thick gloves or cut away from
body
- Acid is corrosive so wear gloves to reduce risk of injury and safety glasses to reduce risk of injury to
eyes
- Stain may stain clothes and skin so wear gloves and lab coat
- Glass coverslip may break and cut your fingers so wear gloves to protect hands
· Method:
- Cut the last 0.5 cm off the end of actively growing garlic or onion root tips
- Treat with acid to soften tissue by breaking down the middle lamella so that the cells will separate
easily when squashed
- Add toluidine blue to stain the chromosomes, warming if needed to intensify the stain
· Variables to be controlled:
- Same age / size seeds
- Temperature
- Light Intensity
- Humidity
· Method:
- Use week-old mustard seedlings. Cut off the top 2cm (stem and leaves) and suspend in agar in a
test tube
- Leave for a week and look for new roots / leaves forming
- Cells at the bottom of the stem differentiate to become new roots which demonstrates
pluripotency
· Safety:
- The fibre could enter and injure the eye when it snaps so wear safety glasses to protect eyes
- Place layers of cloth beneath the mass hanger to stop masses from falling onto the foot and injuring
it
· Variables to be controlled:
- Length of fibre
- Same age
- Temperature
- Humidity
· Method:
- Soak nettle plant stems in water for a week to soften the tissues and allow the fibres to be easily
extracted
- Select adequate fibre (taking into account all variables) and attach one end to a clamp and stand
then progressively hang masses on the other end
8. Plant Mineral Deficiencies (Optimum concentration of substances
· Safety:
- There are no significant safety issues
· Preliminary Work:
- See if proposed method will work
· Things affecting enzyme action are: protein type, volume of solution, stirring, pH, temperature,
surface area, protein concentration…
· Variables to be controlled:
- Volume of mineral solution
- Concentration of solution
- Species of plant
- Light intensity
- Temperature
· Method:
- Dependent variable: E.g. mass of plant tissue, mass of fruit, length of shoot, number / colour of
leaves. Description of method of measuring change in dependent variable
- Take six plants / seedlings and place each of them into a test tube with a different concentration of
solution (one with distilled water to act as a control)
- Cover each tube with foil to exclude light and prevent algae growth that could affect concentration
of mineral ions
- Repeat at each concentration / for each mineral ion 5 times and calculate mean
- Use of graph to identify other values of concentration to test to identify optimum concentration
- Use of graph to estimate range for optimum / to identify other values of concentration to test to
identify optimum concentration
- Concentrations above those first reaching maximum rate of digestion would be wasteful
· Limitations:
- Difficult to control all variables affecting plant growth / protein digestion e.g. seeds do not
germinate at the same time, genetic differences between the plants… / surface area of stain, protein
concentration
- Limiting factor(s)
· Ethical Issues:
- Welfare of frogs e.g. frogs should be kept in suitable conditions / not be harmed when collecting
secretions
- Avoid skin contact with frogs e.g. wear gloves when handling them / wash hands after handling
them / wear eye protection
· Safety:
- Wipe working area with antiseptic solution / work close to a Bunsen Burner which sets up
convection currents of sterile air to prevent growth of unwanted harmful bacteria / contamination
- Secure lids with cellotape but don’t seal completely in order to avoid pathogenic anaerobic bacteria
to grow
- Don’t use 37 ºC as this is human body temperature and could encourage pathogenic bacteria to
grow
· Preliminary Work:
- Practise proposed method / see if proposed method will work
- Carry out experiments to determine a suitable method for collecting secretions from frog
- Carry out experiments to determine the most appropriate method of applying the secretions to the
plates
- Carry out experiments to determine the best parameters for another named variable e.g. suitable
timescale for measuring the inhibition of bacterial growth / conditions for growth of the bacteria / type
of bacteria / …
· Variables to be controlled:
- Concentration of plant material / antibiotic
- Disc size
- Temperature
· Method:
- Dependent variable: Zone of inhibition / absorbance of culture
- Prepare, under sterile conditions, petri dishes with a thin layer of agar in them
- Once the agar is set, spread a drop of bacterial culture (E. Coli) over the surface using a sterile glass
spreader to form a lawn
- Prepare the extract by crushing material using a pestle and mortar with alcohol if necessary
- Minimally lifting the lid, place on the centre of the agar and press lightly
- Secure lids with 2 pieces of cellotape but don’t seal completely in order to avoid pathogenic
anaerobic bacteria to grow
- Observe the plates and the zone of inhibition will be clear. Measure its diameter to give an idea of
relative antimicrobial strength / effectiveness against microbes
- Change in bacterial growth calculated e.g. by measuring area of zone of inhibition / absorbance of
culture
- Means calculated from repeat data
· Limitations:
- Difficult to control all variables (affecting bacterial growth)
- Other components of secretions may affect bacterial growth masking the effect of the antibiotics
- A variable may be acting as a limiting factor for bacterial growth (give example)
UNIT 4
· Safety:
- Possible risk of coconuts falling so collect coconuts beforehand.
· Ethical:
- Minimise disturbance to the habitat
· Preliminary Work:
- Practice proposed method to see if it will work
· Sampling Methods:
- Random Sampling: Used when measuring density of a plant species or slow moving animals.
1. Set up grid using tape measure and use random numbers to generate points to place at least 10
quadrats
3. Density = Total no. of plants counted / (Area of one quadrat x Total no. of quadrats taken)
- Systematic Sampling: A line transect is used to study changes in plant species across an area.
3. Record data
- Surrounding vegetation
- Slope
- Temperature
- Soil water
- Humidity
- O2 concentration
- pH
- Clear table which matches method description with headings and units
· Limitations:
- Difficult to control all variables (abiotic factors affecting the variables being investigated)
- Laboratory conditions may not relate to what happens in reality/real life situation
- We assume that the species is evenly distributed throughout the area and that the placing of the
quadrats is entirely random
- Movement of organisms
· Safety:
- Tissue culture may provide good growing conditions forbacteria
· Preliminary Work:
- Practise proposed method to see if proposed method will work
- Check for other variables that need to be taken into account / controlled
- Light intensity
- O2 concentration
- Mineral Concentration
- Water
- Food
- Time
- pH
· Method:
- Dependent variable: E.g. percentage change in mass of plant tissue / no. of hatched shrimp / height
for seedlings
- Independent variable: Concentration of plant growth regulator / temperature (at least 5 different
ones)
- Specific descriptions of plant tissue culture provided (e.g. need to grow on nutrient gel, aseptic
conditions, antibiotics in gel to prevent growth of microorganisms…) Same as for Totipotency
and Plant Tissue Culture
· Limitations:
- Difficult to control all variables affecting tissue growth + example e.g. exposure to bacteria
- Need for more than one type of plant growth regulator for effective growth
· An increase in environmental temperature causes the yield of some crops to decrease because less
material is stored. As temperature increases, so does respiration / photosynthesis / metabolism which
causes an increase in the GPP. Enzymes are more effective at higher temperatures below an optimum.
Temperature has a greater effect on respiration than photosynthesis so NPP will be smaller as NPP =
photosynthesis – respiration. Photosynthesis may be limited by another factor.
· Method:
- A mixture is prepared containing: the DNA sample, DNA polymerases (with v. high optimal
temperatures), DNA primers (short, single-stranded lengths of DNA that are complementary to those at
the start of the STRs, they have fluorescent markers attached that aid the production of the final profile)
and nucleotides
- The mixture is the placed into a PCR machine where it undergoes the following cycle
1. Sample is heated to 95 ºC à This separates the double helix into two strands
2. Mixture is cooled to 55 ºC à Allows the primers to bind to the start of the STRs
3. Further heating to 70 ºC à DNA polymerases attach to the primers and extend them, replicating the
STR sequence and the adjacent DNA
4. Cycle is repeated for about 25-30 times, which takes about 3 hours, to produce a mixture of
different-length fragments unique to the individual
- It synthesises a new strand of DNA complementary to the template strand in one direction. A
primer is needed to begin synthesis of the complementary strand.
- In the context of primer annealing / 40 to 70 ºC / step 2 à If temperature is too high less binding of
primers will occur
- In the context of extension / 70 to 80 ºC / step 3 àIf temperature is too low synthesis of new DNA
strands would not be completed à If temperature is higher than 95 ºC, the enzyme will denature
· Collect and analyse samples from more than one individual of each
species because:
- One individual does not represent the whole species
- There will be genetic variation between individuals of the same species, testing more than one
sample will control for these differences
4. Gel Electrophoresis
After using PCR, gel electrophoresis can be used to separate them according to their size and an image
of the fragments produced
· Method:
- Separating the fragments
1. The sample mixture is mixed with a coloured dye and placed carefully into wells at one end of
agarose gel
2. The gel is immersed in a buffer solution in a tank and a potential difference is set up across it
3. DNA is –vely charged so will move towards the +ve electrode at the other end of the gel
4. Smaller fragments will move faster so mixture is separated out into a pattern of bands
5. The wells have a reference mixture of DNA fragments of known length to compare your samples to
2. DNA can be transferred from the gel to a nylon membrane by Southern blotting, which can be
treated with a DNA probe. This binds to the bands and carries either a fluorescent or radioactive marker.
Radioactive ones can be seen using autoradiography
3. Coloured DNA probes can be added to gels to see the bands directly
- Graphs can be plotted of the size of fragment against level of fluorescence (gives abundance of
fragment)
UNIT 5
6. Investigating Respiration
· Method:
- Place known mass of organism (maggots) into the respirometer.
- Allow time for them to acclimatise to their surroundings and then move the drop of coloured liquid
back to 0 on the scale using a syringe
- Start the stopwatch and note the position of the coloured liquid at regular intervals of 5 minutes.
Subtract the final value from the first to give the overall distance moved.
- Mass/number of seeds
- Age of seeds
- Ph
- No. of organisms
- Time
· Yeast will respire faster using glucose because glucose is the starting point for glycolysis reactions in
respiration; it is the first molecule to be phosphorylated. / Yeast will respire sucrose faster because it
can be broken down into molecules of glucose and fructose; providing double the substrate for
glycolysis / Yeast will respire sucrose more slowly because sucrose needs to be hydrolysed to glucose
and fructose in order to be used in glycolysis. / Rate of uptake of sugars differs: larger molecules may be
taken up more slowly.
· Effects of:
- No oxygen during investigation à No/less movement of the liquid in the respirometer. No/less
change in volume/pressure of the gas. Aerobic respiration stops / Anaerobic respiration takes place.
Anaerobic respiration produces no carbon dioxide.
- Increasing temperature à Will increase rate of respiration (as it is enzyme controlled) but also the
volume of air in the apparatus
- The apparatus can be calibrated so that the movement of the lid corresponds to a given
volume.
- A canister containing soda lime is inserted between the mouthpiece and the floating chamber. This
absorbs the CO2 that the subject exhales.
- A disinfected mouthpiece is attached to the tube, with the tap positioned so that the
mouthpiece is connected to the outside air. The subject to be tested puts a nose clip on (to ensure
no breathing occurs via the nose), places the mouthpiece in their mouth and breathes the
outside air until they are comfortable with breathing through the tube.
- Switch on the recording apparatus and at the end of an exhaled breath turn the tap so that the
mouthpiece is connected to the spirometer chamber. The trace will move down as the person breathes
in. After breathing normally the subject should take as deep a breath as possible and then exhale as
much air as possible before returning to normal breathing.
- Repeats could be for same student at same time each day for a week or with 10 different students
(same age, gender, health, etc.)
· Variables to be controlled:
- Same person / age / gender / time of day
- Temperature
- Standardise exercise
· How breathing is controlled by the nervous system in response to changing positions e.g. standing
up and sitting down: More energy is needed when standing up. The sympathetic nerve increases heart
rate. The ventilation centre in the medulla responds to chemoreceptors in the carotid that detect
changes in levels of carbon dioxide in blood. Motor cortex. Nerve impulses go to muscles involved in
breathing.
· Ethical issues:
- Snails must be handled carefully so as not to harm or stress it
· Safety:
- Snail secretions may irritate skin or cause allergies or carry microbes à hands should be washed
thoroughly before and after handling snails
- Background Noise
- Humidity
- Light Intensity
- Species
- Age
- Gender
· Method:
- Dependent variable: Time taken to fully emerge
- Allow time until snail has fully emerged from shell and has acclimatised
- With a moistened cotton wool bud, firmly but carefully touch the snail between the eye stalks,
starting the stopwatch immediately
· Outcome: As the number of stimuli increase, the time taken for the snail to re-emerge decreases.
· Limitations:
- Snails already handled before the experiment may not react in the same way
· An increase in temperature increases the rate of chemical reactions in the snail, allowing it to re-
emerge more quickly. To control temperature use incubator/conditioner at constant temperature
suitable for snail