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This document provides a thesis submitted in partial fulfillment of the requirements for a Master's degree in software engineering. It compares variants of the Basic Local Alignment Search Tool (BLAST), which is commonly used to compare biological sequences like DNA and proteins. The thesis analyzes BLAST variants like BLASTN, BLASTP, BLASTX, TBLASTN, and TBLASTX. It compares their algorithms, parameters, and performance, and discusses when each variant is most advantageous based on different conditions and circumstances. The goal is to understand how BLAST variants can be improved by addressing deficiencies and adding new features.
This document provides a thesis submitted in partial fulfillment of the requirements for a Master's degree in software engineering. It compares variants of the Basic Local Alignment Search T…