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Reading: chapter 2 chapter 3: membrane structure and composition, pgs 52-58 (pgs 56-62 if using 5th edition)
membrane proteins
can selectively transport molecules and ions can act as receptors to signal responses by the cell can form adhesions and junctions with other cells
messenger RNA
DNAs genetic code is transferred to mRNA via transcription and the message
ribosomal RNA
participates in reading the message and translating the message into the appropriate protein sequence (translation)
transfer RNA
transfers the appropriate amino acid in the cytoplasm to their designated site in the protein being constructed
6 main types
similar in all cells
rough ER
ER membrane covered with ribosomes that synthesize and release proteins into the ER lumen. The protein products can be secreted or transported to sites within the cell.
ribosome
constructed in the nucleus and programmed to carry out the synthesis of a single type of protein
smooth ER
ER membrane lacking ribosomes that serves to package and transport molecules synthesized in the rough ER. Portions of sER bud off to form transport vesicles that move to the Golgi complex for further processing
Golgi complex
sets of flattened, membrane-enclosed sacs stacked in layers and specialized for processing raw materials into finished products, and directing the products to their destinations including secretion
exocytosis
membrane enclosed vesicles containing finished products fuse with the plasma membrane thereby secreting the contents. (Figure 2-3, 2-4, 2-5)
Lysosomes
membrane-enclosed sacs derived from the Golgi complex containing hydrolytic enzymes to digest and remove unwanted material. These organelles fuse with endocytotic vesicles to breakdown internalized material.
endocytosis
the process by which extracellular material is brought into the cell (Figure 2-8; 2-9)
pinocytosis
invagination of the plasma membrane to form a pouch and internalize extracellular fluid
Peroxisomes
membrane-enclosed sacs containing oxidative enzymes which act to remove hydrogen from toxic molecules. This leads to the formation of hydrogen peroxide (H2O2) which is degraded by catalase contained within the peroxisomes catalase An antioxidant enzyme that decomposes H2O2 into H2O and O2.
Mitochondria
oval double membrane-enclosed organelles containing the enzymes responsible for aerobic metabolism and the production of cellular energy in the form of adenosine triphosphate. (Figure 2-9; 2-10)
Glycolysis
sequence of enzymatic reactions carried out in the cytosol in which a glucose molecule is converted into 2 molecules of pyruvic acid and 2 molecules of ATP are synthesized. This reaction sequence is responsible for anerobic metabolism (Figure 2-10; 2-11). The pyruvic acid molecules are transported into the mitochondrial matrix where each is enzymatically converted to a molecule of Acetyl-CoA and one molecule of CO2, and one molecule of NADH is synthesized
Electron transport
sequence of enzymatic reactions requiring O2 that are carried out in the inner mitochondrial membrane in which the donation of high energy electrons from
NADH and FADH2 lead to the production of ATP and H2O. Oxygen serves as the final electron acceptor and combines with H+ ions to form H2O. For each NADH molecule, 3 ATP molecules are formed and for each FADH2 molecule, 4 ATP molecules are formed (Figure 2-12; 2-13)
Summary
Glycolysis: Glucose => 2 Pyruvic acid + 2 ATP Pyruvate Metabolism: 2 Pyruvic Acid => 2 Acetyl-CoA + 2 CO2 + 2 NADH TCA cycle: 2 Acetyl-CoA => 4 CO2 + 2 ATP + 6 NADH + 2 FADH2 Electron transport: 8 NADH => 24 ATP + 4 H2O; 2 FADH2 => 8 ATP + 2 H2O Combined: 1 glucose => 36 ATP + 6 CO2 + 6 H2O
Cytosol: Semiliquid portion of the cytoplasm in which at least three major functions
take place:
Cytoskeleton
Complex intracellular protein network that provides structural support and the capability for transport of material and cellular movement. Composed of 4 major components.
microtubules
long, hollow, unbranched proteinaceous tubes composed primarily of tubulin and responsible for maintaining cell shape, and for controlling cellular movements such as vesicular (axonal) transport, movement of cilia and flagella, and distribution of chromosomes during cell division.
tubulin
small globular protein (Figure 2-17; 2-18)
axonal transport
bidirectional movement of large molecules and vesicles along the axon of neurons (Figure 2-18; 2-19).
cilia
motile, hair-like protrusions allowing cells to move materials across their surface. They line the respiratory airways and the oviducts. (Figure 2-20; 2-21)
flagella
single, long whip-like appendage that enables cells to move thru their environment. Form the tails of spermatozoa.
microfilaments
filaments composed of two strings of actin molecules that function in cellular contraction and mechanical support of cellular extensions such as microvilli.
intermediate filaments
irregular thread-like protein molecules that provide structural support for cellular components subject to mechanical stress, such as neuronal extensions, muscle cells, and skin cells
microtrabecular lattice
fine interlinked filaments that pervade the cytoplasm and are connected to the inner layer of the plasma membrane. Forms a lattice that suspends other components of the cytoskeleton and organelles. Acts as the cells skeleton by providing shape, rigidity and structural support. (Figure 2-24; 2-27)
Intercellular Communication
Gap junctions
Communicating junctions that permit the passage of small molecules
Direct signaling
Extracellular protein-protein interactions
How are extracellular chemicals secreted by one cell detected by another? 1. G protein coupled receptors, coupled to 2nd messengers pathways e.g. cAMP, IP3 pathways
These pathways ultimately bring about a cellular response by altering the structure and function of proteins (Figure 4-24, 4-25; 3-8, 3-9). 2. Activation of ion channels Ion channels are membrane proteins that permit small soluble ions such as Na, K, Ca and Cl to pass across the plasma membrane. There are two major types: leak channels, which are always open, and gated channels, which open and close in response to various stimuli. Different types of gated channels are gated by changes in membrane voltage, mechanical deformation, or binding of chemical messengers. For the latter category, there are two types: Ionotropic signaling Activation of ion channels by direct binding of extracellular chemical messenger Metabotropic signaling Activation of ion channel via 2nd messenger pathway.
Membrane Transport
The movement of substances across the plasma membrane for the purpose of maintaining homeostasis or carrying out specific functions. The plasma membrane is selectively permeable to certain substances. Therefore some substances can move passively across the plasma membrane while others must be transported. Selective permeability (Figure 3-2). The chemical structure of the plasma membrane (i.e. bilayer of phospholipids)
makes it selectively permeable to lipid soluble substances or to small molecules and ions. Polar molecules or macromolecules cannot permeate the membrane.
Passive transport
Movement of substances across the plasma membrane without expenditure of cellular energy, via direct permeation. This type of transport can occur by movement along an electrical or chemical gradient or by carrier mediated mechanisms.
Active transport
Movement of substances across the plasma membrane that requires the expenditure of cellular energy. This process may occur for substances that must be transported against their electrochemical gradient, or for substances for which the plasma membrane is impermeable (e.g. sugars, amino acids, proteins). There are two general types of active transport, membrane pumps and vesicular transport (next page).
Electrochemical gradient
The combined force of concentration and electrical gradients that act on molecular and ionic substances. Diffusion through a membrane (Figure 3-8; 3-12)
Osmosis
A special case of passive transport occurring when water diffuses down its concentration gradient to regions of higher solute concentration. When this process occurs across the selectively permeable plasma membrane the diffusion of water can exert osmotic pressure. (Figures 3-10, 3-11, 3-12, 3-13; 3-15 thru 3-18)
Case 1: membrane permeable to both water and solute. Case 2: membrane permeable to water, impermeable to solute. Case 3: same as case 2, different initial conditions.
osmotic pressure
The magnitude of opposing hydrostatic pressure that is necessary to stop osmosis. This pressure is proportional to the difference in solute concentrations that exist across the plasma membrane. Because of this effect, solute concentrations in the intracellular and extracellular spaces are kept in careful balance to avoid substantial changes in cellular pressure or volume.
Facilitated diffusion
The binding of the substance can directly cause the protein to change its conformation and thereby facilitate its diffusion across the membrane (Figure 3-14; 3-19). Because the energy of binding is used to induce the conformational change, this is a passive process. Alternatively, the conformational change can be induced by a separate energy-dependent process, such as phosphorylation. This is an active process. The latter mechanisms are often referred to as membrane pumps.
Membrane pumps
Active transport of one or more ionic species against their electrochemical gradients. Examples include the hydrogen-ion pump and the Na+/K+ ATPase
Hydrogen-ion pump
Active transport protein moves H+ against its concentration gradient (Fig 3-16; 3-21) *Animation*
Na+/K+ ATPase
Active transport protein that transports Na+ out of the cell and K+ into the cell . Three Na+ ions are transported out for every two K+ ions in (Figure 3-17; 3-22). This pump is present in every cell and has 3 main functions: maintenance of Na+ and K+ concentration gradients maintenance of osmotic balance establishment of energy gradients are used for co-transport of other substances
Vesicular transport
The movement of large polar molecules or macromolecules across the plasma membrane by means of endocytosis and exocytosis.
Concentration gradient (Table 3-3) Macromolecular anions (A-) High intracellular concentration of nucleic
acids and proteins which carry a net negative ionic charge. Na+ High extracellular concentration due to the Na+/K+ ATPase (Figure 3-23; 3-29) K+ High intracellular concentration due to the Na+/K+ ATPase (Figure 3-23; 3-29) Leak channels: Permit ions to flow down concentration gradients Na/K ATPase: Establishes and maintains concentration gradients
Permeability of the membrane A- Impermeable, nearly infinite resistance Na+ Low permeability, relatively high resistance K+ High permeability, low resistance Diffusion of K+ and Na+ ions through the membrane (Figure 3-20, 3-21;
3-26, 3-27) Because the resistance to the flow of K+ is low, and its concentration gradient is high, K+ tends to flow out of the cell down its concentration gradient. Because K+ ions are positively charged and the inside of the cell is negatively charged, there is an opposing electrostatic force that attracts the K+ ions back into the cell. When these two opposing forces, the concentration gradient and the transmembrane voltage, become equal and
opposite, there is no net flow of K+ ions across the membrane. The transmembrane voltage at this point is referred to as the equilibrium potential for that ion. The equilibrium potential for a particular ionic species can be calculated using the Nernst Equation (Vm = 61 log[co]/[ci]), where Vm is the transmembrane voltage, co and ci are the extracellular and intracellular concentrations of the ionic species, respectively. This equation describes the membrane voltage that exactly counterbalances the concentration gradient for a particular ionic species:
EK = -90 mV ENa = +60 mv *If the permeability of the membrane to a particular ion transiently increases, the Vm will shift towards the equilibrium potential for that ion. Magnitude of the resting potential
Most (not all) of the resting membrane potential, is due to the flow of K+ ions. This is because the resting permeability of the membrane is highest to K and so Vm tends to be dominated by EK (-90 mV). Two other factors contribute to the resting membrane potential in neurons. The first is passive flow of Na+ down its electrochemical gradient. Although the plasma membrane has a low permeability to Na+, there is a high electrochemical gradient acting to pull Na+ into the cell. Therefore the passive flow of Na+ into the cell tends to make the transmembrane potential more positive. The Na+/K+ ATPase transports 3 Na+ ions out of the cell for every 2 K+ ions it transports into the cell. This results in a net movement of positive charge out of the cell, making the inside of the cell more negative. Because of this property, the Na+/K+ATPase is often referred to as an electrogenic pump and it makes a small contribution to the resting membrane potential. The end result of all of these processes acting together tends to give most neurons a resting membrane potential around -65 mV (Figure 3-22; 3-28).
Graded Potentials
Local changes in membrane potential that decay over short distances. Can occur as depolarizations or hyperpolarizations and most often result from chemical synaptic transmission (Figures 4-1, 4-2, 4-3, 4-4). depolarization - decrease in membrane polarization to more positive values than rest. Most often produced by excitatory synaptic transmission. hyperpolarization - increase in membrane polarization to more negative values than rest. Most often produced by inhibitory synaptic transmission.
Action Potential
Brief all-or-nothing reversal in membrane potential (spike), lasting on the order of 1 millisecond, that is brought about by rapid changes in membrane permeability to Na+ and K+ ions. Initiated in axonal or somatic membranes when the membrane potential is depolarized beyond a threshold potential and can propagate along axonal (and dendritic) membranes at a velocity that is determined by several factors. Because of their ability to propagate, action potentials are the primary mechanism used by the nervous system to transfer information over long distances (i.e. 0.1 - 1000 mm) (Figure 4-6).
Voltage-gated channels
Action potentials occur when Na+ and K+ channels in the plasma membrane open in response to depolarization. Because of their sensitivity to membrane depolarization these channels are referred to as voltage-gated channels (Figure 4-7).
Events underlying the rising (Na+) and falling (K+) phases of the action potential (Figure 4-9 in 5th edition only) *Animation* Summary of permeability changes and ion fluxes (Figure 4-9; 4-10). Voltage-gated Na+ channel
Opens (activates) quickly (< 0.5 ms) in response to depolarization, allowing Na+ to flow down its electrochemical gradient into the cell. This movement of positive charge into the cell causes further depolarization, which in turn causes more Na+ channels to open, which leads to more depolarization. This is an example of positive feedback, and this property of the Na+ channel is responsible for the all-or-nothing character of the action potential. Voltage-gated Na channels have both an activation gate (main gate) and an inactivation gate (ball and chain). The channel transitions between three conformations: deactivated (closed but capable of opening), where the activation gate is closed and the inactivation ball is not lodged in the pore. In this state, no current flows. Opening can occur in response to depolarization; activated (open), where the activation gate is open and the inactivation ball is not blocking the pore. Current flows thru the channel; inactivated (closed and incapable of opening), where the activation gate is open but the inactivation ball has swung in to block the pore. No current flows.
In addition the channel is not capable of opening in response to depolarization, because the ball does not respond to depolarization. Removal of inactivation (dislodgement of the ball) is dependent on repolarization back to ~ resting potential. threshold This is the membrane potential which, when reached, leads inevitably to the occurrence of a spike. inactivation Occurs more slowly than channel opening (activation) and contributes to the termination of a spike absolute refractory period A brief period during a spike in which a second spike cannot be generated due to inactivation (Figure 4-13; 4-14). Voltage-gated K+ channel Opens in response to depolarization with a time course that is slower than the Na+ channel. This allows K+ ions to flow out of the cell down their electrochemical gradient, which in turn leads to repolarization of the membrane potential as positive charge leaves the cell. Voltage-gated K channels have only an activation gate, and therefore exist in either open (activated) or deactivated (closed) states. Repolarization is necessary for their deactivation. after hyperpolarization (AHP) A brief period at the end of a spike in which the membrane potential is more negative than rest. relative refractory period A brief period following a spike during which a higher intensity stimulus is needed to generate a second spike (Figure 4-13; 4-14). Na+/K+ ATPase Restores the concentration gradients for Na+ and K+.
Propagation
Action potentials propagate when locally generated depolarizing current spreads to adjacent regions of membrane causing it to depolarize (Figure 4-11; 4-12). Conduction velocity is proportional to axonal diameter and is increased by myelin.
Contiguous conduction
Propagation of action potential in unmyelinated fibers. Is relatively slow and inefficient, especially for small diameter fibers.
Saltatory conduction
Propagation of action potential in myelinated fibers by jumping from node to node Myelin - a multilayered sheath of plasma membrane, derived from specialized glial cells, that wraps around axonal fibers and acts as an insulator to the flow of current (Figure 4-14; 4-15). The sheaths occur at regular intervals (~1mm), and are interrupted by gaps in the insulation called Nodes of Ranvier. The nodes contain high densities of voltage-gated Na+ and K+ channels and can generate action potentials. In myelinated axons, action potentials propagate by jumping from node to node through a process called saltatory conduction (Figure 4-16 in 5th edition only). This process greatly increases the speed of propagation. Schwann Cells - myelin-forming glial cells in the peripheral nervous system. Oligodendrocytes - myelin-forming glial cells in the central nervous system. Demyelinating Diseases - certain diseases, such as multiple sclerosis, result from the degeneration myelin.
Synapses
Junction between two neurons, or between a neuron and a muscle or gland that enables one cell to electrically and/or biochemically influence another cell (Figure 4-15; 4-17). Synaptic transmission is the primary means of rapid inter-neuronal communication in the brain Presynaptic cell initiates the signal Postsynaptic (target) cell receives the signal Postsynaptic targets can be another neuron, a muscle or a gland
Electrical Synapse
A direct electrical connection between two cells, formed by a gap junction, that allows current to pass from one cell to another (Figure 3-6). Composed of multiple proteins called connexons. This type of synaptic connection has no delay and is less common than chemical synapses.
Chemical Synapse
Anatomical junction between two neurons, or between a neuron and a muscle or gland where a chemical neurotransmitter is released by the presynaptic neuron which diffuses across the synaptic cleft and binds to receptors on the postsynaptic neuron to exert a physiological response (Figure 4-16; 4-18). The presynaptic release of neurotransmitter, the postsynaptic response, and the removal of transmitter from the synaptic cleft are each governed by complex mechanisms.
Presynaptic release
Neurotransmitter is concentrated into synaptic vesicles in the presynaptic terminal, and is released through exocytosis when the vesicles fuse with the plasma membrane. Vesicle fusion depends on the presence Ca++ ions in the intracellular medium. Because the intracellular concentration of Ca++ is kept very low (on the order of 100nM), Ca++ must enter the synaptic terminal from the extracellular space. This occurs when an action potential propagates into the synaptic terminal and strongly depolarizes the membrane, causing voltage-gated Ca++ channels to open and allowing Ca++ to flow down its electrochemical gradient. The entry of Ca++ promotes the fusion of the vesicles with the plasma membrane and the neurotransmitter is released into the synaptic cleft. The opening of Ca++ channels in response to depolarization provides the mechanism that tightly links the release of transmitter to the occurrence of an action potential. At any given synapse there is usually, but not always, one type of neurotransmitter released.
Postsynaptic response
This response most commonly consists of a rapid and graded change in membrane potential in the postsynaptic neuron referred to as a post-synaptic-potential (PSP). PSPs occur when a neurotransmitter binds to a membrane protein called the postsynaptic receptor causing it to change its conformation and increase its permeability to one or more ions. For each type of neurotransmitter there is a distinct class of postsynaptic receptors. PSPs can exhibit a wide range of properties, but most commonly fall into two major categories (Figure 4-17; 4-19):
Excitatory-Post-Synaptic-Potentials (EPSP)
A depolarizing potential that tends to bring the cell towards threshold for generation of an action potential. These PSPs usually result from an increase in membrane permeability to a combination Na+ and K+ ions. The driving force pulling Na+ into the cell is greater than that pulling K+ out of the cell and the net result is depolarization. The most common excitatory neurotransmitters are glutamate (Glu) and acetylcholine (ACh).
Inhibitory-Post-Synaptic-Potentials (IPSP)
A hyperpolarizing potential that tends to bring the cell away from threshold for generation of an action potential. These PSPs usually result from an increase in membrane permeability to either K+ or Cl- ions. When the permeability to K+ is increased, K+ will flow out of the cell. When the permeability to Cl- is increased, Cl- will flow into the cell. In both cases, this leads to a hyperpolarization resulting from a net decrease in the amount of positive charge inside the cell. The most common inhibitory neurotransmitters are gamma-amino-butyric acid (GABA) and Glycine (Gly).