SEMINAR ON DNA COMPUTING

Teacher Incharge: Ms.Sheenu (lect,Comp deptt) Presented by: Manisha Mittal Roll No.:1202144

3yr.CO1B

Topics of Discussion
Introduction How It Started? Alderman DNA computer experiment How DNA Computer Will Work? DNA:A Unique Data structure Research Activities Advantages Conclusion

Introduction
Microprocessors made of silicon will eventually reach their limits of speed and miniaturization Scientists have found the new material they need to build the next generation of microprocessors. Millions of natural supercomputers exist inside living organisms, including your body:DNA DNA computing is the use of DNA (Deoxyribose Nucleic Acid) molecules, the molecules which encode genetic information for all living things, in computers.

How It Started?
It was all started by a professor of Computer Science at USC by the name of Leonard M. Adleman His article outlined how to use DNA to solve a well-known mathematical problem, called the directed Hamilton Path problem.

The problem is also known as the "traveling salesman" problem. The goal of the problem is to find the shortest route between a number of cities, going through each city only once.

Aldeman DNA Computer Experiment

Adleman chose to find the shortest route between

seven cities. Strands of DNA represent the seven cities. In genes, genetic coding is represented by the letters A, T, C and G. Some sequence of these four letters represented each city and possible flight path. These molecules are then mixed in a test tube, with some of these DNA strands sticking together. A chain of these strands represents a possible answer.

Experiment(cont.)
Within a few seconds, all of the possible combinations of DNA strands, which represent answers, are created in the test tube. Adleman eliminates the wrong molecules through chemical reactions, which leaves behind only the flight paths that connect all seven cities. This early DNA computer is far from challenging silicon-based computers in terms of speed. Another drawback of his DNA computer is that it requires human assistance.

How DNA Computer Will Work?

This is accomplished in a suspended solution of DNA, where certain combinations of DNA molecules are interpreted as a particular result to a problem encoded in the original molecules present.

Working(cont.)
Three years after Adleman's experiment, researchers at the University of Rochester developed logic gates made of DNA These DNA logic gates rely on DNA code. They detect fragments of genetic material as input, splice together these fragments and form a single output.

Working(cont.)
For instance, a genetic gate called the "And gate" links two DNA inputs by chemically binding them so they're locked in an end-to-end structure, DNA computers can perform a staggering number of calculations simultaneously; specifically, on the order of 10^9 calculations per mL of DNA per second DNA computer components ,logic gates and biochips, will take years to develop into a practical, workable DNA computer

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Working(cont.)
In the cell, DNA is modified biochemically by a variety of enzymes, which are tiny protein machines that read and process DNA according to nature's design. There is a wide variety and number of these "operational" proteins, which manipulate DNA on the molecular level. For example, there are enzymes that cut DNA and enzymes that paste it back together. Other enzymes function as copiers, and others as repair units.

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DNA: A Unique Data Structure

The data density of DNA is impressive of nearly 18 Mbits per inch.In two dimensions, if you assume one base per sq. nanometer, the data density is over one million Gbits per square inch Just like a string of binary data is encoded with ones and zeros, a strand of DNA is encoded with four bases, represented by the letters A, T, C, and G. The bases (also known as nucleotides) are spaced every 0.35 nanometers along the DNA molecule, giving DNA an

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Data Structure(cont.)
Another important property of DNA is its double stranded nature. The bases A and T, and C and G, can bind together, forming base pairs. Therefore every DNA sequence has a natural complement. Double stranded DNA is similar to a RAID 1 array, where data is mirrored on two drives, allowing data to be recovered from the second drive if errors occur on the first.

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Data Structure(cont.)
Error correction is one example. Errors in DNA happen due to many factors. Occasionally, DNA enzymes simply make mistakes, cutting where they shouldn't, or inserting a T for a G. DNA can also be damaged by thermal energy and UV energy from the sun. If the error occurs in one of the strands of double stranded DNA, repair enzymes can restore the proper DNA sequence by using the complement strand as a reference
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Research Activities
Duke University/Caltech:Working on massively parallel addition using DNA tiles New York University :Assembling complex nanostructures out of DNA. Bell Labs :Fabricating DNA motors to assemble electronic components.

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Research Activities(cont.)
University of Southern California : Automating a self-contained lab system for DNA computing; proved, in theory, that DNA can crack DES data encryption standard University of Wisconsin: Adapting DNAchip technology to do DNA computation on a solid surface

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Advantages
Successor To Silicon Silicon microprocessors have been the heart of the computing world for more than 40 years. There are several advantages to using DNA instead of silicon As long as there are cellular organisms, there will always be a supply of DNA. The large supply of DNA makes it cheap resource. Unlike the toxic materials used to make traditional microprocessors, DNA biochips can be made cleanly. DNA computers are many times smaller than today's computers
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CONCLUSION
Currently, molecular computing is a field with a great deal of potential, but few results of practical value Currently, a functional DNA "computer" of the type most people are familiar with lies many years in the future. But work continues: in his article Speeding Up Computation via Molecular Biology Lipton shows how DNA can be used to construct a Turing machine, a universal computer capable of performing any calculation. While it currently exists only in theory, it's possible that in the years to come computers based on the work of Adleman, Lipton, and others will come to replace traditional silicon-based 18 machines.

GLOSSARY
Articles from the New York Times and Wired magazine. Both are well-written, fairly thorough introductions to molecular computing, written with a non-technical audience in mind. Primer on Molecular Genetics -This series of pages, put out by the U.S. Department of Energy, will tell you more than you ever wanted to know about DNA, chromosomes, genetics, gene mapping. Small is beautiful -a well-organized listing of sites pertaining to emerging science of Nano technology, or molecular fabrication. If youre building A molecular computer, why not build a molecular scale robot to go along with it? Daves deoxyribonucleic acid page -A collection
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QUERIES
Q U E R I E S
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