Академический Документы
Профессиональный Документы
Культура Документы
S
Lelly Yuniarti, S.Si., M.Kes.
1
What is enzyme?
Itis a biological catalyst accelerating
chemical reactions without itself
undergoing any change.
Terminology; Substrate,
coenzyme(cofactors), Apoenzyme,
prosthetic group,
Holoenzyme = apoenzyme +
prosthetic group
Substrate specificity
2
Definition of Enzyme
Protein that function in the acceleration of chemical
reaction in biological system.
4
SOME OTHRE POINTS OF
ENZYMES
Apo enzyme
(Protein)
Holo Enzyme
6
Apo enzyme : an enzyme or a part
of an enzyme that consists of
polypeptide chains alone, lacking
required non protein co factors
7
An enzyme molecule is often very
much larger than a molecule of its
substrate
Enzymes have molecular weights
ranging from 10,000 to millions,
whereas substrate are usually in the
hundreds
Mostly, anyone enzymes will act on
the substrate
It show specificity
8
An enzyme molecule has an active
group (functional group) which attacks
the substrate molecule
This substrate molecule fit on the
enzyme at a particular site, called: the
active site or binding site or catalytic
site
Functional Group: One of the groups of
atoms that give rise to the characteristic
reactions of organic compounds
9
The Architecture of The Active Site
12
13
The interaction between enzyme
& substrate can be explained by
two models:
I. Fischer Lock and Key Hypothesis:
The active site has rigid structural features
which are complementary to the substrate
S
a b c
+
a c
b
E ES -
Complex
s
u
b
s
t a b c
r
a +
t
e
ES -
Complex
a b c
Enzyme
Active Site is 16
These
models explain some aspects of
enzyme specificity
That is:
Enzyme exhibit chemical and
stereochemical specificity
17
Enzymes exhibit specificity,
because:
The conformation of the complex
protein molecule
The uniqueness of its active site
The structural configuration of the
substrate molecule.
18
Chemical Specificity
Can be divided into two types of specificity:
1. Group Specificity:
Enzyme act on several different, but closely
related substrates
E.g.: Alcohol dehydrogenases catalyse the
oxidation of a variety of alcohol
2. Absolute Specificity:
Enzyme act only on one particular substrate.
e.g.: Glucokinase catalyse the transfer of
phosphate from ATP only to glucose.
19
Stereochemical Specificity
20
The Naming and
The Classification of
Enzymes
The naming of enzymes
The names of enzymes usually indicate
the substrate involved (with the ending:
-ase)
The Classification of Enzymes
The E.C of I.U.B (Enzyme Committee of
International Union of Biochemistry)
divided enzymes into six main classes,
on the basis of the reaction catalyzed.
21
Enzyme Class Type of Reaction
Catalyzed
1. Oxidoreductases Oxidation/Reduction reactions
2. Transferases Transfer of an atom or group between
two molecules
3. Hydrolases Hydrolysis reactions
4. Lyases Removal of a group from substrate
5. Isomerases Isomerations reactions
6. Ligases The synthetic joining of two molecules
coupled with the breakdown of
pyrophosphate bond in nucleotide
triphosphate
22
23
Enzyme catalyzed
reactions
E + S ES E + P
These are:
1. Temperatures
2. pH
3. The concentration of the enzyme
4. The concentration of the substrate
5. The presence of inhibitors
6. The presence of the other factors
25
The Effect of Temperature
26
The effect of temperature
Q10 (the temperature coefficient) = the
increase in reaction rate with a 10C rise in
temperature.
For chemical reactions the Q10 = 2 to 3
(the rate of the reaction doubles or triples with
every 10C rise in temperature)
Enzyme-controlled reactions follow this rule as
they are chemical reactions
BUT at high temperatures proteins denature
The optimum temperature for an enzyme
controlled reaction will be a balance between
the Q10 and denaturation.
27
2007 Paul Billiet ODWS
The effect of temperature
Denaturat
Q10 ion
Enzyme
activity
0 1 2 3 4 5
0 0 0 0 0
28
2007 Paul Billiet ODWS
Temperature / C
The effect of temperature
For most enzymes the optimum temperature
is about 30C
Many are a lot lower,
cold water fish will die at 30C because their
enzymes denature
A few bacteria have enzymes that can
withstand very high temperatures up to
100C
Most enzymes however are fully denatured at
70C
29
2007 Paul Billiet ODWS
The Effect of pH
By changing of pH, the tertiary
structure of the enzyme is disrupted.
Then, the enzyme denatured.
30
The effect of pH
Optimum pH values
Enzyme
activity Trypsin
Pepsin
1 3 5 7 9 11
2007 Paul Billiet ODWS pH 31
The effect of pH
Extreme pH levels will produce denaturation
The structure of the enzyme is changed
The active site is distorted and the substrate
molecules will no longer fit in it
At pH values slightly different from the
enzymes optimum value, small changes in the
charges of the enzyme and its substrate
molecules will occur
This change in ionisation will affect the binding
of the substrate with the active site.
32
2007 Paul Billiet ODWS
The Effect of Enzyme Concentration
If the amount of enzyme in a reaction
is doubled, the amount of substrate
converted to product is doubled.
33
The Effect of Substrate Concentration
Doubling of the substrate concentration,
doubles the reaction rates (while the
enzyme concentration is kept
constant)
34
Substrate concentration: Non-enzymic
reactions
Reaction
velocity
Substrate concentration
Vmax
Reaction
velocity
Substrate
concentration
Two Kinds of
enzyme catalyzed reactions
41
Some Important Points of Co-
Enzymes
43
From the structural and physiological
point of view, there is no similarity among
the member of B-complex vitamins
The only similarity is:
Almost all of them function as the co
enzyme.
Co enzyme function as group transfer
reagents:
47
Flavinnucleotide (FMN & FAD)
- They are derivative of riboflavin
- They act of oxidation reduction
reactions
Co enzyme A (CoA-SH)
- Contains panthotenic acid
- Act on several metabolic processes: bio
energetic metabolism, lipid metabolism,
carbohydrate metabolism, etc
48
FH4 (Tetrahydrofolate)
- Derivatives of folic acid
- Acts on: single carbon metabolism and
erythropoesis
49
Cobamide
Important co enzyme on:
erythropoesis, nucleate synthesis and
protein synthesis
PyridoxalPhosphate
- Derivatives of pyridoxine
- Acts on decarboxylation and
transamination process
50
ENZYME ASSAY
We can measure the concentration of
the enzyme, indirectly, by its activity
51
The activity of enzyme is often expressed in
International Unit (I.U)
52
The activity of enzyme can be expressed
also in specific activity.
It is defined as:
Units of enzyme activity related to the
total protein content of the sample
being assayed.
(It is expressed as: one unit/mg
protein)
53
INHIBITORS
The effect of Inhibitors on Enzyme
Action
There are two main classes of
inhibitors of enzyme action:
1. Irreversible inhibitors
2. Reversible inhibitors
54
1. Irreversible Inhibitors
When the enzyme is exposed to the
inhibitor, it forms a covalent bond which
is very difficult to be broken.
Then the EI-complex is permanently
inactive.
E + I EI E + P
E.g.: DIPF (Diisopropylphosphofluoridate)
potent nerve gas
55
2. Reversible Inhibitors
When the enzyme is exposed to the inhibitor,
it forms a loosely bond which easily
dissociates from the enzyme, leaving its
activity unimpaired.
E + I EI E+P
57
Competitive inhibition can be overcome by a
high concentration of substrate sufficiently
58
Non Competitive Inhibitors
The inhibitors bind to a site other than
the substrate binding site on the
enzyme.
It result in changing the structure of
the enzyme.
59
Non competitive inhibition cannot be overcome
by increasing the substrate concentration. 60
Uncompetitive Inhibitors
The inhibitors bind to a site other than the
substrate binding site on the ES complex
E+S ES E+P
+
I
EIS
E+P
61
Iso Enzymes
They are polymeric enzymes, which catalyze
the same chemical reaction, but migrate
differently on electrophoresis.
The mechanism for the formation of Iso
enzyme is:
The arrangement of subunits arising from two
different genetic loci in different combinations
to form the active polymeric enzyme.
Enzyme isoform (=isoenzyme) is an enzyme
that can exist in different forms in different
tissues.
62
Some Enzymes which posses
isoform
Lactate dehydrogenase (LDH)
Creatine Kinase (CK)
Phosphofructokinase
63
LDH
A tetrameric enzyme
Only two distinct subunits have been elucidated,
i.e.: H (heart type) and M (muscle type)
These two subunits are combined in five different
types:
Type Compositio Location
n
LDH1 HHHH Myocardium & RBC
LDH2 HHHM Myocardium & RBC
LDH3 HHMM skeletal muscle &
Kidney
64
muscle
Phosphofructokinase
A tetrameric enzyme
Consists of two types of subunit : M
(nuscle type) and L (liver type)
These two types are combined to form
five tetramer:
M4, M3L, M2L2, ML3, and L4
66
KINTETICS OF THE ENZYME
CATALYZED REACTIONS
NEXT LECTURE
67
Enzymes: Clinical Application
Diagnosis of disease
Prognosis of disease
Enzymes as therapeutic agents
68
Clinical Diagnosis
The possibility that enzymes can be used as
markers for disease is based on:
1. Some enzymes are found only in specific
or in a limited number of tissues
2. Many enzymes arising from a variety of
sources can be detected in a plasma or
serum.
3. Therefore, an increase of any tissue
specific enzyme in the blood indicates
some kind of tissue damage.
69
4. Some enzymes are secreted into the
plasma and function there. (Called:
Functional Plasma Enzymes)
For this group:
Injury to the organ(s) producing these
enzymes will cause a decrease or even a
lost in activity
E.g.:
- Coagulation enzymes (Thrombin etc)
- Cholinesterase
70
5. Some are intracellular and function there
(Termed: Non Functional Plasma Enzymes)
For this group:
They are only found in plasma in significant
quantities when cells are damaged as a
consequent of the leaky cell membranes.
Thus, the assay of the enzyme activity in this
group will be related to the number of cells
damaged.
These enzymes are useful in clinical
diagnosis, both in the initial stages of the
diseases, and during the period of recovery
and repair.
71
Distribution of enzymes in
tissues and serum patterns
If the concentration of a particular enzyme in a
tissue is normally high, then a damage to a tissue
will cause release into plasma of a high
concentration of this enzyme.
And Vice Versa
The nature of the enzyme released as the
consequence of damage depends on its
subcellular localization
If the damage is minimal, only cytoplasmic
enzymes will leak out.
If the damage is extensively, mitochondrial
enzymes will also be released.
72
73
Patterns of activities in human
organs
74
2. Lactate dehydrogenase is found in a
great amount in muscle and in liver,
but is very minimal in lung.
Therefore:
Determination of several enzymes will
be useful to provide information about
the site and extent of pathological
change.
75
Glutamate dehydrogenase activity in human organs
76
Lactate dehydrogenase activity in human organs
77
Examples of the use of serum
enzymes in diagnosis
Enzyme Disease
Glutamate Myocardial Infarction
oxaloacetate
transmainase (SGOT)
Glutamate pyruvate Viral Hepatitis
transaminase (SGPR)
Amylase, Lipase Acute pancreatitis
Creatine kinase Muscle disease
Acid phosphatase Prostate carcinoma
Alkali phosphatase Bone disease 78
Clinical
Enzymolog
y
79
Objectives
Listthe clinically important enzymes and
isoenzymes.
Outline
different ways of measuring plasma
enzymes
80
Enzymes
Biological catalysis
Very efficient can increase reaction
rates at the order of x 10
All are proteins- so liable to
denaturation
Specific to substrates
Partly specific to tissues
Assay by measure of rate of specific
reaction catalyzed by that enzyme
81
Measurement of serum
enzymes
Diagnostic enzymology
Enzymes are normally intracellular and LOW
concentration in blood
Enzyme release (leakage)in the blood indicates
cell damage (cell death, hypoxia, intracellular
toxicity)
Quantitative measure of cell/tissue damage
Fairly non invasive possible to do repeated tests
Organ specificity- but not absolute
specificity in spite of same gene content.
Most enzymes are present in most cells-
82
differing amounts
Information from enzymes
measurements in serum
Presence of disease
Organs involved
Aetiology /nature of disease:
differential diagnosis
Extentof disease-more damaged
cells-more leaked enzymes in blood
Time course of disease
83
Enzymes routinely
measured
NAME OF THE ENZYME PRESENT IN
86
LACTATE DEHYDROGENASE
(LDH)
Pyruvate Lactate (anaerobic glycolysis)
87
Isoenzyme Composition Composition Present in Elevated in
name
Acute
Myocardium
CK-2 MB myocardial
/ Heart
infarction
Skeletal
CK-3 MM muscle,
Myocardium
90
ALANINE TRANSAMINASE (ALT) AND
ASPARTATE TRANSAMINASE( AST)
In viral hepatitis
Rapid rise in
transaminases (AST &
ALT) in serum occurs
even before bilirubin rise
is seen
92
LEVELS OF ENZYMES IN MYOCARDIAL
INFARCTION
AST and CK rise in 6
hours following acute
myocardial infarction
HBDH and LDH are
elevated much later and
remains high for a
longer period of days
HBDH
LDH
CK AST
CK-MB
93
ALKALINE PHOSPHATASE (ALP)
AMYLASE
Is the digestive enzymes from the pancreas and salivary
glands to digest complex carbohydrates.
Elevated in acute pancreatitis.
It is used as a marker to detect acute pancreatitis AND
appendicitis. 96
glutamyltransferase ( GT)
- Oxoglutarate + L-aspartate
Aspartate
aminotransferase
AST
L- glutamate + oxaloacetate
+
NADH + H+
Malate
dehydrogenase
MDH
L-matate + NAD+
99
MEASUREMENT OF ENZYMES
100
Conditions in which level of activity in
NAME OF THE ENZYME
serum is elevated
Aspartate Amino transferase (AST) Myocardial infarction, Liver disease especially
Serum glutamate-oxaloacetate with liver cell damage
transaminase (SGOT)
Alanine Amino transferase (ALT) Liver disease especially with liver cell damage
Serum glutamate-pyruvate
transaminase (SGPT)
Alkaline Phosphatase (ALP) Liver disease- biliary obstruction
Osteoblastic bone disease-rickets
Acid Phosphatase (ACP) Prostatic carcinoma
glutamyl Transferase ( GT) Liver disorder like liver cirrhosis
Creatine kinase (CK) Myocardial infarction and skeletal muscle
disease(muscular dystrophy
Lactate Dehydrogenase (LDH) Myocardial infarction, other diseases like liver
disease.some blood diseases
Amylase Acute pancreatitis
101
SUMMARY
Enzymes are biological catalysts present in every cell of the body.
An enzyme will act on a specific substrate yielding a product.
An isoenzyme is a genetic variant produced largely within a specific tissue.
Isoenzyme patterns can give information about organ-specific disease.
Important enzymes in the investigation of heart disease are CK, LDH and AST.
Important enzymes in the investigation of liver disease are AST, ALT, alkaline
phosphatase and GGT.
Creatine kinase has three isoenzymes: CK-MM, CK-MB and CK-BB.
LDH has five isoenzymes.
Alkaline phosphatase can be used in the investigation of liver and bone
disease.
Increased levels of acid phosphatase are found in prostate cancer.
GGT is induced by alcohol and is useful in monitoring alcohol abuse.
Enzyme measurements should be performed using zero order kinetics, i.e.
using excess substrate.
Determinations of enzyme activity can be performed using an end-point or
kinetic method 102
The Fate Of The Plasma
Enzymes
Following release into the plasma, the
enzymes will be eliminated:
1. Excreted via urine (some enzymes with
small molecule weight, like amylase)
2. The majority of enzymes (with high
molecule weight) will be degraded via
normal catabolic pathways at very
different rates.
103
Half Life Of Several Plasma
Enzymes
Enzyme Half Life
GOT Circa 20 h
GPT 50 h
GLDH 18 h
LDH 140 h
CPK 10 h
Choline Esterase 10 d
Lipase 5h 104
Relationship Between Genetic
Abnormalities and The Enzyme
Activities
Genetics defects could have significant effects on
the synthesis and activities of the enzymes, which
will emerge to the illness
Examples:
1. Deficiency of anti elastase will cause destructive
lung disease
2. Defect of activity of antihaemophilic factor (Factor
VII) will cause haemophilia
3. Defect of activity of tyrosine kinase will cause a
disturbance of the growth and differentiation of
the cells, which will lead to the pathogenesis of
carcinoma mammae.
105
Enzyme Can Function As Therapeutic
Agents
Examples:
1. Streptokinase is applied in
thrombosis. Mode of action:
Streptokinase
Plasminogen
Plasmin
Methylation
Enzymes as therapeutic agents
Streptokinase, Urokinase
Blood clotting disorder, myocardial
infarction
L-asparaginase
Acute lymphocytic leukemia
Adenosine deaminase (PEG-conjugated)
Immunedeficiency disease
Interferon alfa-2a (PEG-conjugated)
Chronic hepatitis
108
Note:
Not all of the enzymes are protein!
e.g.: RNA molecules (I.E. L-19 RNA) function
as ribonuclease and as RNA-polymearse.