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1. Higher
reaction rates: enzyme-catalyzed
reactions are 106-1012 times faster than
uncatalyzed reactions
2. Reaction
conditions: enzyme-driven reactions
are below 100oC, 1 atm and occurs in neutral pH
3. Great
specificity: with respect to identities of
both the substrate and products (induced fit &
lock-and-key)
Factors affecting enzymatic activity
Enzyme concentration
Substrate concentration
pH
Temperature
Classification of enzyme: according to reaction type
Structure
Domain A
residues 1-99; 170-404
has the 3 catalytic residues Asp197, Glu233, Asp300
Domain B
residues 100-169
Calcium binding site
Domain C
residues 405-496
Functions (Luo, 2005)
Hydrolytic
activity responsible for the initial
breakdown of the polymeric starch
Insolution, it binds to oral streptococcus which
may result to clearing
Bacteria-bound amylase is capable of hydrolyzing
starch to glucose source and be metabolized to
lactic acid
Bound to tooth enamel, it can initiate plaque
formation
Industrial use of amylase
To determine
the optimum pH and optimum
temperature of salivary amylase
Methodology
A) Effect of Temperature
Mix
Take 3 drops of mixture onto spot plate
Add 2 drops of Iodine solution. Record as zero minute
Repeat step every minute until a yellow solution is
observed. Note the time (t)
Follow same procedure for mixtures incubated at
other temperatures (RT, 37C, 50C, 70C)
Plot reciprocal of time (1/t) over temperature (C)
Determine optimum
temperature of salivary
amylase base on the graph
Methodology
B) Effect of pH
Acetate buffer pH 4 and
Enzyme solution 2% unbuffered starch
Mix 1 ml acetate buffer
Put 2ml in Test tube And 1ml 2% unbuffered
Incubate both test tubes for Solution
5 minutes at 37C water
bath
Mix
Take 3 drops of mixture onto spot plate
Add 2 drops of Iodine solution. Record as zero minute
Repeat step every minute until a yellow solution is
observed. Note the time (t)
Follow same procedure for mixtures of different pH
(5, 6.7, 8, 10)
Plot reciprocal of time (1/t) over pH
Determine optimum pH
of salivary amylase base
on the graph
Results and Discussion
Results of Groups 1 4
A) Effect of Temperature
4C 0
RT (30) 3 0.33
37C 2 0.50
50C 3 0.33
70C 0
Results of Groups 5 9
A) Effect of Temperature
4C 0
RT (28) 4 0.25
37C 2 0.5
50C 3 0.33
70C 0
.6 Groups 1 4 (Effect of Temperature) 0.6 Groups 5 9 (Effect of Temperature)
0.5 0.5
.5 0.5
.4 0.4
0.33 0.33 0.33
1/t (mins-1) 1/t (mins-1)
.3 0.3
0.25
.2 0.2
.1 0.1
0 0
0 0
0
0 10 20 30 40 50 60 70 80 0
0 10 20 30 40 50 60 70 80
Temperature (C)
Temperature (C)
NaCl
NaCl binds to the ionic side chains of amino acids and speeds up the reaction
The activity of salivary amylase increases with increasing salt concentration
Boiling
Enzyme are composed of 2o 4o structures maintained by H bonds, these
weak bonds can be broken down at elevated temperatures which causes
enzymes to unwind
Iodine
To test for the presence of starch
Yellow (indicates the breakdown of starch into glucose monomers )
Effects of Temperature
Buffered Starch
We use buffered starch to keep the pH constant while performing the
experiment
The more concentrated, the higher its capacity to stabilize pH; most
enzymes accept between 0.05% - 2%. (Veille, 2001)
With pKa correspond to the optimum pH or the enzyme assay
Phosphate buffer
Also know as phosphate buffered saline which has NaCl, Na 2PO4, and some
K2PO4
As molarity and ion concentrations match those as the human body
(isotonic)
Results of Groups 1 4
A) Effect of pH
4 0
5 3 0.33
6.7 1 1
8 1 1
10 5 0.20
Results of Groups 5 9
A) Effect of pH
4 0
5 0
6.7 2 0.50
8 0
10 5 0.20
1.2 Groups 1 4 (Effect of pH) 0.6 Groups 5 9 (Effect of pH)
1 1 0.5
1 0.5
0.8 0.4
0.4 0.2
0.33 0.2
0.2
0.2
0.1
0
0 0 0 0
3 4 5 6 7 8 9 10 11 0
3 4 5 6 7 8 9 10 11
pH
pH
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Print Media Pte Ltd: Singapore
Murray, R. et al. (2003). Harpers Illustrated Biochemistry. Mc-Graw Hill Companies: United States
Pelath et al. (2000). Human Salivary - amylase at 1.6 resolution: Implication for its role in oral
cavity. Acta Cryst. D52, 435-446.
Rafelson, M. & Bezkorovainy, A. (2000). Concise Biochemistry. Marcel Dekker, Inc: 270 Madison
Avenue, New York.
Ramasubbu et al. (2005). Structure- function relationship of human salivary - amylase: Role of
Aromatic Residues. Biologia, Bratislava, 60/Supply 16:47-56.
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