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2
Cells
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Chromosomes
4
Chromosomes
Diploid individuals have 2
sets of homologous
chromosomes
One from mom, one from
dad
Gene locus:
— Alleles of a gene reside at same
location
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Chromosomes
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Sex-Linked Genes
What 2 sex chromosomes make up a male? Female?
— Male = XY, Female = XX
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Why boys are at a disadvantage!
Boys have a higher chance of getting——
Red-green color blindness
Hemophilia
Night blindness
And Duchenne Muscular Dystrophy, et al
because of sex-linked inheritance
The trait is carried on the X chromosome !
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X vs. Y
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X Inactivation
Lyon hypothesis
One X chromosome in each cell is randomly inactivated
early in the embryonic development of females
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Mosaics
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XX-distribution of active X
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Barr Bodies
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X Inactivation is Incomplete
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XIST
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Sex-Linked Inheritance
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X-Linked Recessive Inheritance
Hemophilia A
Duchenne Muscular Dystrophy
Red-green color blindness
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Why boys are at a disadvantage!
Boys have a higher chance of getting——
Red-green color blindness
Hemophilia
Night blindness
And Duchenne Muscular Dystrophy, et al
because of sex-linked inheritance
The trait is carried on the X chromosome !
20
Hemophilia A
1 in 5,000 or 10,000 males
Caused by deficient or defective factor VIII, a key
component of the clotting cascade
Prolonged and often severe bleeding from wounds and
hemorrhages in the joints and muscles
Platelet activity is normal
21
Extensive bruising of right outer thigh
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Duchenne Muscular Dystrophy, DMD
1 in 3500 males
A progressive weakness and loss of muscle
Die of respiratory or cardiac failure, < 25y
The DMD gene is the largest gene known by far,
with high mutation rate
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A patient with late-
stage Duchenne
muscular dystrophy,
showing severe
muscle loss
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Transverse section of gastrocnemius muscle from (A) a normal
boy and (B) a boy with Duchenne muscular dystrophy. Normal
muscle fiber is replaced with fat and connective tissue
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Red-green color blindness
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A, Image perceived by a person with normal color vision. B, The predicted
perception by a person with protanopia, a form of red-green colorblindness.
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People with red-green
color blindness see either
a three or nothing at all
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Why boys are at a higher risk?
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Why boys are at a higher risk?
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X-Linked Recessive Diseases
Character No. 1:
1 are much more common
among males than among females!!
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X-Linked Recessive Inheritance
Male: XY
Skipped generations
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X-Linked Recessive Diseases
Character No. 2:
2 absence of father-to-son
transmission, skipped generations.
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(carrier)
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(normal)
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Probabilities:
0% boys affected
100% daughters carriers
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(carrier)
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Probabilities:
50% boys affected
50% daughters affected,
and 50% daughters carriers
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X-Linked Recessive Diseases
Character No. 3:
3 recurrence risks are more
complex than for autosomal disorders.
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About Female
Some XAXa females can be affected
……..Because of random X inactivation!!
They are called: manifesting heterozygotes
Yet they are mildly affected because of the small fraction
of active normal X chromosomes
Females with only one X chromosome may manifest the
diseases
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X-Linked Recessive Diseases
Character No. 4:
4 some XAXa females can be
mildly affected because of random X inactivation.
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X-Linked Recessive Diseases
Are much more common among males
Absence of father-to-son transmission, skipped
generations
Recurrence risks are more complex than for autosomal
disorders
Some XAXa females can be mildly affected because of
random X inactivation
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X-Linked Dominant Inheritance
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Hypophosphatemic Rickets
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Incontinentia Pigmenti Type I
Character:
Character abnormal skin pigmentation, conical or
missing teeth, and ocular and, in some cases,
neurological abnormalities
Only seen in females!!
……Because males are so severely affected that
they do not survive to term
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Rett Syndrome
A neurodevelopmental disorder
1 in 10, 000 females and a lot less males because most of
them do not survive to term
Character:
Character autistic behavior, mental retardation, seizures,
and gait ataxia
The severity varies substantially because of random X
inactivation
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Rett Syndrome
Most are caused by mutations in MECP2 gene
And most of the mutations are de novo events coming
from the paternal germline
MECP2 protein binds to other genes and repress the
transcription
Loss-of-function mutations result in the inappropriate
expression of genes involved in brain development
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X-Linked Dominant Diseases
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X1, chromosome with normal allele;
X2, chromosome with disease allele.
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X-Linked Dominant Inheritance
A lot less common than X-linked recessive diseases
Much more severe in males
Twice as common in females as in males
Skipped generations are uncommon
Father-to-son transmission is not seen
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Attribute X-Linked Dominant X-Linked Recessive
Recurrence risk for 50% of sons affected; 50% 50% of sons affected;
heterozygous female × of daughters affected 50% of daughters
normal male mating heterozygous carriers
Recurrence risk for 0% of sons affected; 100% 0% of sons affected;
affected male × normal of daughters affected 100% of daughters
female mating heterozygous carriers
Transmission pattern Vertical; disease phenotype Skipped generations may
seen in generation after be seen, representing
generation transmission through
carrier females
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Sex-Limited and Sex-Influenced Traits
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Mitochondrial DNA (mtDNA)
Mitochondria:
Mitochondria can produce adenosine triphosphate
(ATP) as essential energy source
Have their own DNA molecules, which are called
mtDNA
Each cell contain several hundred or more
mitochondria in the cytoplasm
72
mtDNA
mtDNA contains no introns
Encodes 2 ribosomal RNAs (rRNAs), 22 transfer
RNAs (tRNAs) and 13 polypeptides involved in
oxidative phosphorylation
The transcription happens in the mitochondrion,
which is located in the cytoplasm
73
The circular mitochondrial
DNA genome. Locations of
protein encoding genes are
shown, as are the locations
of the 2 ribosomal RNA
genes and 22 transfer RNA
genes. The replication
origins of the heavy (OH)
and light (OL) chains and
the noncoding D loop are
shown.
74
Mitochondrial Inheritance
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Only females can transmit the disease mutation to their offspring.
Complete penetrance of the mutation is shown in this pedigree.
76
Mitochondrial Inheritance
A single cell may have some molecules having an
mtDNA mutation and others do not
This is called heteroplasmy
The larger the percentage of mutant mtDNA, the
more severe the expression of the disease
The percentage changes through chance variation
or selective advantage during cell division
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Mitochondrial Inheritance
78
Mitochondrial Disorders
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Missense Mutations
in Protein-Coding mtDNA Genes
Leber hereditary optic neuropathy (LHON)
1 in 10, 000 persons
Rapid loss of vision in the central visual field because of
optic nerve death, begins in their thirties
Heteroplasmy is minimal, so expression is uniform
80
Single-base mutations
in a tRNA gene
Myoclonic epilepsy with ragged-red fiber syndrome
(MERRF)
Mitochondrial encephalomyopathy and stroke-like
episodes (MELAS)
mtDNA is heteroplasmic so is highly variable in its
expression
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Duplications and Deletions
Kearns–Sayre disease
Pearson syndrome
Chronic progressive external ophthalmoplegia
(CPEO)
82
Associated with some
common human diseases
Late-onset deafness
Alzheimer disease
Contribute to the aging process
83
Mitochondrial Inheritance
84
Genomic Imprinting
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Genomic Imprinting
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Prader–Willi
and Angelman Syndromes
Both are caused by the same deletion of about 4Mb of the
long arm of chromosome 15
Both are seen in about 1 of 15, 000 persons
Prader-Willi sydrome (PWS) if the deletion is inherited from
the father
Angelman syndrome if it is inherited from mother
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PWS and Angelman Syndrome
88
Illustration of the effect
of imprinting on
chromosome 15
deletion. A, Inheritance
of the deletion from the
father produces
Prader-Willi syndrome
(PWS) (note the
inverted V-shaped
upper lip, small hands,
and truncal obesity. B,
Inheritance of the
deletion from the
mother produces
Angelman syndrome
(note the characteristic
posture)
89
PWS and Angelman Syndrome
Are caused by the same deletion
Why different?
Because of genomic imprinting:
The 4-Mb deletion contains several genes that are imprinted on the
chromosome 15 from the mother, while others are imprinted from the
father
Thus several genes are active on only 1 chromosome
So the same deletions from mother or father lose different active
genes, resulting in different diseases
90
Illustration of the effect of imprinting on chromosome 15 deletion. C,
Pedigrees illustrating the inheritance pattern of this deletion and the
activation status of genes in the critical region (the 4-Mb deletion)
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PWS and Angelman Syndrome
Other mechanisms:
92
Beckwith-Wiedemann Syndrome
An overgrowth condition accompanied by an
increased predisposition to cancer
Large size for gestational age, neonatal hypoglycemia, a
large tongue, creases on the ear lobe, and omphalocele
(an abdominal wall defect)
Having an increased risk for Wilms tumor (a kidney
cancer) and hepatoblastoma (a liver cancer)
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Beckwith-Wiedemann Syndrome
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Beckwith-Wiedemann Syndrome
96
Schematic of the organization of several imprinted genes on chromosome
11p15.5 that are involved in the pathogenesis of Bechwith-Wiedemann
syndrome. It can arise from loss of imprinting of the growth promoting
gene, IGF2, on the maternally transmitted chromosome, 2 copies of
paternal allele with an active IGF2 as a consequence of uniparental
disomy, or imprinting of the growth-suppressing gene, CDKN1C, on the
maternally transmitted chromosome
97
Russell-Silver Syndrome
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99
Imprinting defects that lead to down-regulation of IGF2 on the paternal
allele cause some cases of Russel-Silver syndrome. Red: genes that
are not methylated and therefore expressed; green: genes that are
methylated and therefore silenced.
100
Genomic Imprinting
101
Anticipation and Repeat Expansion
Anticipation:
Anticipation some genetic diseases display an
earlier age of onset and/or more severe expression
in the more recent generations
102
Anticipation
Myotonic dystrophy:
dystrophy an autosomal dominant
disease involving progressive muscle deterioration
and myotonia
1 in 8000 persons
Caused by mutations in DMPK, a protein kinase
located on chromosome 19
103
A three-generation family affected
with myotonic dystrophy. The
degree of severity increases in
each generation. The grandmother
(right) is only slightly affected, but
the mother (left) has a
characteristic narrow face and
somewhat limited facial
expression. The baby is more
severely affected and has the facial
features of children with neonatal-
onset myotonic dystrophy,
including an open, triangle-shaped
mouth. The infant has more than
1000 copies of the trinucleotide
repeat, whereas the mother and
grandmother each have
approximately 100 repeats.
104
Repeat Expansion
The disease-causing mutation is an expanded CTG
trinucleotide repeat lying in the 3’UTR of the gene
The number of these repeats is strongly correlated with
severity of the disease
Normal persons: 5 to 37 copies
mildly affected ones: 50 to 100 copies
Those with full-blown myotonic dystrophy: have anywhere
from 100 to several thousand copies
105
Repeat Expansion
The number of repeats often increases with
succeeding generations
As the number increases, the age of onset
decreases and severity often increases
So the expansion of this trinucleotide repeat is the
cause of anticipation in myotonic dystrophy
106
A, Myotonic dystrophy pedigree illustrating anticipation. In this
case, the age of onset for family members affected with an
autosomal dominant disease is lower in more recent
generations.
107
B, An autoradiogram from a
Southern blot analysis of the
myotonic dystrophy gene in
three individuals. Individual a
is homozygous for a 4- to 5-
repeat allele and is normal.
Individual b has one normal
allele and one disease allele of
175 repeats; this individual has
myotonic dystrophy. Individual
c is also affected with myotonic
dystrophy and has one normal
allele and a disease-causing
allele of approximately 900
repeats.
108
Repeat Expansion
The expanded repeat produces an mRNA product that
remains in the nucleus of the cell
The abnormal mRNA interacts with proteins that normally
bind other RNA products to regulate their splicing.
As a result, several proteins are abnormally formed,
giving rise to some of the pleiotropic features of the
disease phenotype
109
Repeat Expansion
110
Repeat Expansion
Have been identified as the cause of more than 20
genetic diseases
3 categories:
1st: neurological diseases. The mutations often have a gain-of-
function effect
2nd: phenotypically more diverse diseases
3rd: the repeat expansions are much larger than 1st and 2nd
111
Summary for Anticipation
112
The Fragile X Story
There is a 25% excess of males with mental
retardation
Fragile X syndrome:
syndrome mental retardation, distinctive
facial appearance, hypermobile joints, and increased
testicular volume in postpubertal males
113
The Fragile X Story
114
Boys with fragile X syndrome. Note the long faces,
prominent jaws, and large ears and the similar
characteristics of children from different ethnic groups:
European (A), Asian (B), and Latin American (C).
115
An X chromosome from
a male with fragile X
syndrome, showing an
elongated, condensed
region near the tip of
the long arm.
116
The Fragile X Story
The prevalence is higher in males (1/4000) than in
females (1/8000)
Normal transmitting males (NTM): males who have
affected descendants but are not affected themselves
The mothers of NTM had a much lower percentage of
affected sons than did the daughters of these males
Daughters of NTM were never affected with the disorder,
but these women’s sons could be affected
117
A pedigree showing the
inheritance of the fragile X
syndrome. Females who carry a
premutation (50 to 230 CGG
repeats) are shown by dotted
lines. Affected individuals are
represented by solid symbols. A
normal transmitting male, who
carries a premutation of 70 to 90
repeat units, is designated NTM.
Note that the number of repeats
increases each time the mutation
is passed through another female.
Also, only 5% of the NTM’s sisters
are affected, and only 9% of his
brothers are affected, but 40% of
his grandsons and 16% of his
granddaughters are affected. This
is the Sherman paradox.
118
The Fragile X Story
FMR1 gene is the disease’s gene, 5’UTR contains a CGG
repeat unit
6~50 copies in normal persons, 200~1000 or more in
persons with fragile X syndrome (a full mutation)
An intermediate number of repeats, ranging
approximately from 50 to 200 copies, is seen in normal
transmitting males and their female offspring
119
The Fragile X Story
Expansion: When the female transmit the gene to their
offspring, there is an expansion from the premutation of 50
to 200 repeats to the full mutation of more than 200
repeats
These expansions do not occur in male transmission
Premutations tend to become larger in successive
generations, and larger premutations are more likely to
expand to a full mutation
120
The Fragile X Story
Males with the premutation do not have affected
daughters because repeat expansion occurs in
female transmission
Grandsons and great-grandsons of NTM are more
likely to be affected than are brothers because of
progressive repeat expansion through successive
generations of female permutation carriers
121
A pedigree showing the
inheritance of the fragile X
syndrome. Females who carry a
premutation (50 to 230 CGG
repeats) are shown by dotted
lines. Affected individuals are
represented by solid symbols. A
normal transmitting male, who
carries a premutation of 70 to 90
repeat units, is designated NTM.
Note that the number of repeats
increases each time the mutation
is passed through another female.
Also, only 5% of the NTM’s sisters
are affected, and only 9% of his
brothers are affected, but 40% of
his grandsons and 16% of his
granddaughters are affected. This
is the Sherman paradox.
122
The Fragile X Story
The highest FMR1 mRNA expression levels are in the
brain
Persons with normal and premutation FMR1 genes both
produce mRNA
While those with full mutations have no FMR1 mRNA in
their cells, indicating that transcription of the gene has
been eliminated
123
The Fragile X Story
mRNA production is elevated in those with
premutations, and this mRNA has toxic effects
1/3 of males with premutations develop a neurological
disease characterized by ataxia and tremors in later life.
20% of females with FMR1 premutations experience
premature ovarian
124
The Fragile X Story
For persons with full mutations, the CGG repeat is heavily
methylated
And the degree of methylation, which is likely to influence
transcription of FMR1, is correlated with severity of
expression of the disorder
< 5% of the diseased are caused by other loss-of
function point mutations in FMR1
125
The Fragile X Story
The protein product of FMR1, FMRP, may be involved in
transporting mRNA from the nucleus to the cytoplasm, and
regulating the translation of mRNA
Another fragile site is also associated with an expansion of
CGG repeat in the 5′ region of gene FMR2, subsequent
hypermethylation, and results in mental retardation
The CGG repeat at this locus can expand when
transmitted through either males or females
126
Summary
127
Summary
128
Study Question No. 1
129
Study Question No. 2
130
Study Question No. 3
For X-linked recessive disorders, the ratio of
affected males to affected females in populations
increases as the disease frequency decreases.
Explain this in terms of gene and genotype
frequencies.
The disease frequency in males is q, and in females it
is q2. The male-to-female ratio is thus q/q2 or 1/q. Thus,
as q decreases, the male-to-female ratio increases.
131
Study Question No.4
Figure 5-18 shows the inheritance of hemophilia A in a family.
What is the risk that the male in generation IV is affected with
hemophilia A? What is the risk that the female in generation IV
is a heterozygous carrier? What is the risk that she is affected
by the disorder?
132
Because the male’s grandfather is affected with the disorder, his
mother must be a carrier. His father is phenotypically normal and
therefore does not have the disease gene. Thus, the male in
question has a 50% risk of developing hemophilia A. His sister’s
risk of being a heterozygous carrier is also 50%. Her risk of being
affected with the disorder is close to zero (barring a new mutation
on the X chromosome transmitted by her father).
133
Study Question No.5
134
Male-to-male transmission can be observed in autosomal dominant inheritance, but it is
not observed in X-linked dominant inheritance. Thus, males affected with X-linked
dominant disorders must always have affected mothers, unless a new mutation has
occurred.
Males and females are affected in approximately equal proportions in autosomal
dominant inheritance, but there are twice as many affected females as males in X-linked
dominant inheritance (unless the disorder is lethal prenatally in males, in which case only
affected females are seen).
In X-linked dominant inheritance, all of the sons of an affected male are normal, and all
of the daughters are affected. In X-linked dominant diseases, heterozygous females tend
to be more mildly affected than are hemizygous males.
In autosomal dominant inheritance, there is usually no difference in severity of
expression between male and female heterozygotes.
135
Study Question No.6
How would you distinguish mitochondrial inheritance from
other modes of inheritance?
In mitochondrial inheritance, the disease can be inherited only
from an affected mother. In contrast to all other types of
inheritance, no descendants of affected fathers can be affected.
Note that males with an X-linked recessive disease who mate
with normal females cannot transmit the disease to their
offspring, but their grandsons can be affected with the disease.
136
Study Question No.7
137
Because Becker muscular dystrophy is relatively rare, it is
reasonable to assume that the woman is a normal homozygote.
Thus, she can transmit only normal X chromosomes to her
offspring. Her male offspring, having received a Y chromosome
from the father and a normal X from the mother, will all be
unaffected. All female offspring of this mating will receive a
mutated X chromosome from the father and all will be
heterozygous carriers of the disorder.
138
Study Question No.8
139
If the man is phenotypically normal, his X chromosome
cannot carry a Duchenne muscular dystrophy mutation.
The female will transmit her mutation-carrying
chromosome to half of her offspring, on average. Thus,
half of the sons will be affected with the disorder, and
half of the daughters will be heterozygous carriers.
140
Study Question No.9
A boy and his brother both have hemophilia A. If there is
no family history of hemophilia A in previous generations,
what is the probability that the boys’ aunt (the mother’s
sister) is a heterozygous carrier of the disease gene?
The boys’ mother must be a heterozygous carrier for a factor
VIII mutation. Thus, one of the mother’s parents must also
have carried the mutation. Consequently, the probability that
the mother’s sister is a carrier is 1/2.
141
Study Question No.10
It is possible to create a zygote from two copies of
the maternal genome alone. In amphibians, the
zygote will develop and mature into an adult without
fertilization by a sperm cell (this process is known
as parthenogenesis). The same experiment has been
attempted in mice, but it always results in early
prenatal death. Explain this.
142
This is explained by genomic imprinting. For normal
development, differential expression of genes inherited
from the father and mother is necessary. If the
expression pattern from only one parent is inherited, the
embryo cannot develop normally and dies. The
experiment works in amphibians because genomic
imprinting does not occur in these animals.
143
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